>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r1 (using abuild 3.12.0-r0) started Mon, 30 Oct 2023 12:18:41 +0000 >>> py3-kallisto: Checking sanity of /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/72) Installing libbz2 (1.0.8-r6) (2/72) Installing libffi (3.4.4-r3) (3/72) Installing gdbm (1.23-r1) (4/72) Installing xz-libs (5.4.4-r0) (5/72) Installing mpdecimal (2.5.1-r2) (6/72) Installing libpanelw (6.4_p20231007-r0) (7/72) Installing readline (8.2.1-r2) (8/72) Installing sqlite-libs (3.43.2-r0) (9/72) Installing python3 (3.11.6-r1) (10/72) Installing python3-pycache-pyc0 (3.11.6-r1) (11/72) Installing pyc (3.11.6-r1) (12/72) Installing python3-pyc (3.11.6-r1) (13/72) Installing py3-click (8.1.6-r0) (14/72) Installing py3-click-pyc (8.1.6-r0) (15/72) Installing libquadmath (13.2.1_git20231014-r0) (16/72) Installing libgfortran (13.2.1_git20231014-r0) (17/72) Installing openblas (0.3.24-r0) (18/72) Installing py3-numpy (1.25.2-r0) (19/72) Installing py3-numpy-pyc (1.25.2-r0) (20/72) Installing py3-parsing (3.1.1-r0) (21/72) Installing py3-parsing-pyc (3.1.1-r0) (22/72) Installing py3-packaging (23.2-r0) (23/72) Installing py3-packaging-pyc (23.2-r0) (24/72) Installing py3-platformdirs (3.11.0-r0) (25/72) Installing py3-platformdirs-pyc (3.11.0-r0) (26/72) Installing py3-certifi (2023.7.22-r0) (27/72) Installing py3-certifi-pyc (2023.7.22-r0) (28/72) Installing py3-charset-normalizer (3.3.1-r0) (29/72) Installing py3-charset-normalizer-pyc (3.3.1-r0) (30/72) Installing py3-idna (3.4-r4) (31/72) Installing py3-idna-pyc (3.4-r4) (32/72) Installing py3-urllib3 (1.26.18-r0) (33/72) Installing py3-urllib3-pyc (1.26.18-r0) (34/72) Installing py3-requests (2.31.0-r1) (35/72) Installing py3-requests-pyc (2.31.0-r1) (36/72) Installing py3-pooch (1.8.0-r0) (37/72) Installing py3-pooch-pyc (1.8.0-r0) (38/72) Installing py3-scipy (1.11.3-r0) (39/72) Installing py3-scipy-pyc (1.11.3-r0) (40/72) Installing py3-attrs (23.1.0-r1) (41/72) Installing py3-attrs-pyc (23.1.0-r1) (42/72) Installing py3-rpds-py (0.10.6-r0) (43/72) Installing py3-rpds-py-pyc (0.10.6-r0) (44/72) Installing py3-referencing (0.30.2-r0) (45/72) Installing py3-referencing-pyc (0.30.2-r0) (46/72) Installing py3-jsonschema-specifications (2023.07.1-r1) (47/72) Installing py3-jsonschema-specifications-pyc (2023.07.1-r1) (48/72) Installing py3-jsonschema (4.19.1-r0) (49/72) Installing py3-jsonschema-pyc (4.19.1-r0) (50/72) Installing py3-lark-parser (1.1.7-r0) (51/72) Installing py3-lark-parser-pyc (1.1.7-r0) (52/72) Installing py3-poetry-core (1.7.0-r0) (53/72) Installing py3-poetry-core-pyc (1.7.0-r0) (54/72) Installing py3-installer (0.7.0-r1) (55/72) Installing py3-installer-pyc (0.7.0-r1) (56/72) Installing py3-gpep517 (15-r0) (57/72) Installing py3-gpep517-pyc (15-r0) (58/72) Installing py3-wheel (0.41.2-r0) (59/72) Installing py3-wheel-pyc (0.41.2-r0) (60/72) Installing py3-iniconfig (1.1.1-r6) (61/72) Installing py3-iniconfig-pyc (1.1.1-r6) (62/72) Installing py3-pluggy (1.3.0-r0) (63/72) Installing py3-pluggy-pyc (1.3.0-r0) (64/72) Installing py3-py (1.11.0-r2) (65/72) Installing py3-py-pyc (1.11.0-r2) (66/72) Installing py3-pytest (7.4.3-r0) (67/72) Installing py3-pytest-pyc (7.4.3-r0) (68/72) Installing py3-setuptools (68.2.2-r0) (69/72) Installing py3-setuptools-pyc (68.2.2-r0) (70/72) Installing py3-pytest-runner (6.0.0-r2) (71/72) Installing py3-pytest-runner-pyc (6.0.0-r2) (72/72) Installing .makedepends-py3-kallisto (20231030.121844) Executing busybox-1.36.1-r13.trigger OK: 555 MiB in 174 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.19/kallisto-1.0.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 146 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-kallisto: Fetching https://github.com/AstraZeneca/kallisto/archive/v1.0.10/kallisto-1.0.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 158k 0 158k 0 0 269k 0 --:--:-- --:--:-- --:--:-- 269k >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.19/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.19/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2023-10-30 12:18:47,208 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2023-10-30 12:18:47,480 poetry.core.masonry.builders.wheel INFO Building wheel fatal: not a git repository (or any of the parent directories): .git 2023-10-30 12:18:47,514 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2023-10-30 12:18:47,514 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.11.6, pytest-7.4.3, pluggy-1.3.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 2.70s ============================== >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/utils/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/data/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.11 >>> py3-kallisto-pyc*: Package size: 708.0 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r1.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.11 >>> py3-kallisto*: Package size: 500.0 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r1.apk >>> py3-kallisto: Build complete at Mon, 30 Oct 2023 12:18:52 +0000 elapsed time 0h 0m 11s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/72) Purging .makedepends-py3-kallisto (20231030.121844) (2/72) Purging py3-click-pyc (8.1.6-r0) (3/72) Purging py3-click (8.1.6-r0) (4/72) Purging py3-scipy-pyc (1.11.3-r0) (5/72) Purging py3-scipy (1.11.3-r0) (6/72) Purging py3-pooch-pyc (1.8.0-r0) (7/72) Purging py3-pooch (1.8.0-r0) (8/72) Purging py3-platformdirs-pyc (3.11.0-r0) (9/72) Purging py3-platformdirs (3.11.0-r0) (10/72) Purging py3-requests-pyc (2.31.0-r1) (11/72) Purging py3-requests (2.31.0-r1) (12/72) Purging py3-certifi-pyc (2023.7.22-r0) (13/72) Purging py3-certifi (2023.7.22-r0) (14/72) Purging py3-charset-normalizer-pyc (3.3.1-r0) (15/72) Purging py3-charset-normalizer (3.3.1-r0) (16/72) Purging py3-idna-pyc (3.4-r4) (17/72) Purging py3-idna (3.4-r4) (18/72) Purging py3-urllib3-pyc (1.26.18-r0) (19/72) Purging py3-urllib3 (1.26.18-r0) (20/72) Purging py3-numpy-pyc (1.25.2-r0) (21/72) Purging py3-numpy (1.25.2-r0) (22/72) Purging openblas (0.3.24-r0) (23/72) Purging py3-poetry-core-pyc (1.7.0-r0) (24/72) Purging py3-poetry-core (1.7.0-r0) (25/72) Purging py3-jsonschema-pyc (4.19.1-r0) (26/72) Purging py3-jsonschema (4.19.1-r0) (27/72) Purging py3-jsonschema-specifications-pyc (2023.07.1-r1) (28/72) Purging py3-jsonschema-specifications (2023.07.1-r1) (29/72) Purging py3-referencing-pyc (0.30.2-r0) (30/72) Purging py3-referencing (0.30.2-r0) (31/72) Purging py3-attrs-pyc (23.1.0-r1) (32/72) Purging py3-attrs (23.1.0-r1) (33/72) Purging py3-rpds-py-pyc (0.10.6-r0) (34/72) Purging py3-rpds-py (0.10.6-r0) (35/72) Purging py3-lark-parser-pyc (1.1.7-r0) (36/72) Purging py3-lark-parser (1.1.7-r0) (37/72) Purging py3-gpep517-pyc (15-r0) (38/72) Purging py3-gpep517 (15-r0) (39/72) Purging py3-installer-pyc (0.7.0-r1) (40/72) Purging py3-installer (0.7.0-r1) (41/72) Purging py3-wheel-pyc (0.41.2-r0) (42/72) Purging py3-wheel (0.41.2-r0) (43/72) Purging py3-pytest-runner-pyc (6.0.0-r2) (44/72) Purging py3-pytest-runner (6.0.0-r2) (45/72) Purging py3-pytest-pyc (7.4.3-r0) (46/72) Purging py3-pytest (7.4.3-r0) (47/72) Purging py3-iniconfig-pyc (1.1.1-r6) (48/72) Purging py3-iniconfig (1.1.1-r6) (49/72) Purging py3-pluggy-pyc (1.3.0-r0) (50/72) Purging py3-pluggy (1.3.0-r0) (51/72) Purging py3-py-pyc (1.11.0-r2) (52/72) Purging py3-py (1.11.0-r2) (53/72) Purging py3-setuptools-pyc (68.2.2-r0) (54/72) Purging py3-setuptools (68.2.2-r0) (55/72) Purging py3-packaging-pyc (23.2-r0) (56/72) Purging py3-packaging (23.2-r0) (57/72) Purging py3-parsing-pyc (3.1.1-r0) (58/72) Purging py3-parsing (3.1.1-r0) (59/72) Purging libgfortran (13.2.1_git20231014-r0) (60/72) Purging libquadmath (13.2.1_git20231014-r0) (61/72) Purging python3-pyc (3.11.6-r1) (62/72) Purging python3-pycache-pyc0 (3.11.6-r1) (63/72) Purging pyc (3.11.6-r1) (64/72) Purging python3 (3.11.6-r1) (65/72) Purging gdbm (1.23-r1) (66/72) Purging libbz2 (1.0.8-r6) (67/72) Purging libffi (3.4.4-r3) (68/72) Purging libpanelw (6.4_p20231007-r0) (69/72) Purging mpdecimal (2.5.1-r2) (70/72) Purging readline (8.2.1-r2) (71/72) Purging sqlite-libs (3.43.2-r0) (72/72) Purging xz-libs (5.4.4-r0) Executing busybox-1.36.1-r13.trigger OK: 376 MiB in 102 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...