>>> py3-biopython: Building community/py3-biopython 1.82-r1 (using abuild 3.13.0-r3) started Mon, 29 Apr 2024 14:40:54 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/30) Installing openblas (0.3.27-r0) (2/30) Installing libbz2 (1.0.8-r6) (3/30) Installing libffi (3.4.6-r0) (4/30) Installing gdbm (1.23-r1) (5/30) Installing xz-libs (5.6.1-r3) (6/30) Installing mpdecimal (4.0.0-r0) (7/30) Installing libpanelw (6.4_p20240330-r0) (8/30) Installing readline (8.2.10-r0) (9/30) Installing sqlite-libs (3.45.3-r0) (10/30) Installing python3 (3.12.3-r1) (11/30) Installing python3-pycache-pyc0 (3.12.3-r1) (12/30) Installing pyc (3.12.3-r1) (13/30) Installing py3-numpy-pyc (1.25.2-r1) (14/30) Installing python3-pyc (3.12.3-r1) (15/30) Installing py3-numpy (1.25.2-r1) (16/30) Installing py3-installer (0.7.0-r2) (17/30) Installing py3-installer-pyc (0.7.0-r2) (18/30) Installing py3-gpep517 (15-r2) (19/30) Installing py3-gpep517-pyc (15-r2) (20/30) Installing py3-parsing (3.1.2-r1) (21/30) Installing py3-parsing-pyc (3.1.2-r1) (22/30) Installing py3-packaging (24.0-r1) (23/30) Installing py3-packaging-pyc (24.0-r1) (24/30) Installing py3-setuptools (69.5.1-r0) (25/30) Installing py3-setuptools-pyc (69.5.1-r0) (26/30) Installing py3-wheel (0.42.0-r1) (27/30) Installing py3-wheel-pyc (0.42.0-r1) (28/30) Installing py3-numpy-dev (1.25.2-r1) (29/30) Installing python3-dev (3.12.3-r1) (30/30) Installing .makedepends-py3-biopython (20240429.144100) Executing busybox-1.36.1-r26.trigger OK: 520 MiB in 131 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.82.tar.gz Connecting to files.pythonhosted.org (151.101.36.223:443) Connecting to files.pythonhosted.org (151.101.36.223:443) saving to '/var/cache/distfiles/biopython-1.82.tar.gz.part' biopython-1.82.tar.g 50% |**************** | 9546k 0:00:00 ETA biopython-1.82.tar.g 100% |********************************| 18.5M 0:00:00 ETA '/var/cache/distfiles/biopython-1.82.tar.gz.part' saved >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.82.tar.gz... 2024-04-29 14:41:09,520 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-04-29 14:41:09,639 root INFO running bdist_wheel 2024-04-29 14:41:09,711 root INFO running build 2024-04-29 14:41:09,712 root INFO running build_py 2024-04-29 14:41:09,723 root INFO creating build 2024-04-29 14:41:09,724 root INFO creating build/lib.linux-riscv64-cpython-312 2024-04-29 14:41:09,724 root INFO creating build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,725 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,726 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,727 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,728 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,730 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,732 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,733 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,734 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,735 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,738 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,740 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,741 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,743 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:09,744 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-29 14:41:09,745 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-29 14:41:09,746 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-29 14:41:09,748 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,749 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,751 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,752 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,753 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,754 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,755 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,757 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,758 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,759 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,760 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,761 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,762 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,763 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,764 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,766 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,767 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,768 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,769 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,770 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,771 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,772 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,773 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,774 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,775 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:09,777 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,777 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,778 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,779 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,780 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,781 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,782 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,784 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,785 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,786 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,787 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-29 14:41:09,788 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-04-29 14:41:09,789 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-04-29 14:41:09,791 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,791 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,792 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,793 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,794 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,796 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,797 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,797 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,798 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,799 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,800 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,801 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-29 14:41:09,803 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-04-29 14:41:09,803 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-04-29 14:41:09,805 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application 2024-04-29 14:41:09,805 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application 2024-04-29 14:41:09,807 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,807 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,808 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,809 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,811 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,812 root INFO copying Bio/Blast/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-29 14:41:09,813 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-04-29 14:41:09,814 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-04-29 14:41:09,815 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:09,816 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:09,817 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-29 14:41:09,818 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-29 14:41:09,819 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-29 14:41:09,820 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-29 14:41:09,822 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-04-29 14:41:09,822 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-04-29 14:41:09,824 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-29 14:41:09,824 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-29 14:41:09,825 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-29 14:41:09,827 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-29 14:41:09,828 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-29 14:41:09,829 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-29 14:41:09,830 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-29 14:41:09,831 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-29 14:41:09,832 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-29 14:41:09,833 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-29 14:41:09,834 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-29 14:41:09,835 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-29 14:41:09,836 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-29 14:41:09,838 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,838 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,839 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,840 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,841 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,842 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,843 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-29 14:41:09,845 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-29 14:41:09,845 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-29 14:41:09,847 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-29 14:41:09,848 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-29 14:41:09,849 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-29 14:41:09,850 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-29 14:41:09,851 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-29 14:41:09,852 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-29 14:41:09,853 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,854 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,855 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,856 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,857 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,858 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,859 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,860 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-29 14:41:09,861 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,862 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,863 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,864 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,865 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,866 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,867 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,868 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,869 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,870 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,871 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,872 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,873 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 14:41:09,875 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,876 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,877 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,878 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,879 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,880 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-29 14:41:09,881 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-29 14:41:09,882 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-29 14:41:09,883 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-29 14:41:09,885 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-04-29 14:41:09,885 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-04-29 14:41:09,887 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-04-29 14:41:09,887 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-04-29 14:41:09,889 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-04-29 14:41:09,889 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-04-29 14:41:09,891 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-04-29 14:41:09,891 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-04-29 14:41:09,893 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,893 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-29 14:41:09,894 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-29 14:41:09,894 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-29 14:41:09,896 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-29 14:41:09,897 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-29 14:41:09,898 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-29 14:41:09,899 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-29 14:41:09,900 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-29 14:41:09,901 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-04-29 14:41:09,902 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-04-29 14:41:09,904 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,904 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,905 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,906 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,907 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,908 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,909 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,910 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,911 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,912 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,913 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,914 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:09,915 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-29 14:41:09,916 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-29 14:41:09,917 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-29 14:41:09,918 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-29 14:41:09,919 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-29 14:41:09,920 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-29 14:41:09,922 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,922 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,923 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,924 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,926 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,927 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:09,928 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-29 14:41:09,929 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-29 14:41:09,930 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-29 14:41:09,931 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-29 14:41:09,932 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-04-29 14:41:09,933 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-04-29 14:41:09,934 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-29 14:41:09,935 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-29 14:41:09,936 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-29 14:41:09,937 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-29 14:41:09,939 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,940 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,941 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,942 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,943 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,944 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,945 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,947 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,948 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,949 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,950 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,951 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,952 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,953 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,954 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,955 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,956 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,957 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,958 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,959 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,960 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,961 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,962 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,963 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,964 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,965 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,966 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,967 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,968 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,969 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,970 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,971 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,972 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,973 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,974 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,975 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,976 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,977 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:09,979 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-29 14:41:09,979 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-29 14:41:09,980 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-29 14:41:09,981 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-29 14:41:09,982 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-04-29 14:41:09,983 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-04-29 14:41:09,984 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,985 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,986 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,987 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,988 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,989 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-29 14:41:09,991 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-29 14:41:09,991 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-29 14:41:09,992 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-29 14:41:09,993 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-29 14:41:09,994 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-29 14:41:09,999 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,000 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,001 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,002 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,003 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,005 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,006 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,007 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-29 14:41:10,009 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,009 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,011 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,012 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,013 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,014 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-29 14:41:10,016 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,017 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,018 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,019 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,020 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,021 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-29 14:41:10,023 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 14:41:10,024 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 14:41:10,025 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 14:41:10,026 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 14:41:10,028 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 14:41:10,028 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 14:41:10,029 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 14:41:10,031 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,031 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,032 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,033 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,034 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,036 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,037 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 14:41:10,038 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,039 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,040 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,041 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,042 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,043 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 14:41:10,044 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 14:41:10,045 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 14:41:10,046 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 14:41:10,048 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,049 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,050 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,051 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,052 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,053 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,055 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,056 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,057 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,058 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,059 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,060 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,061 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,062 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,063 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,064 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,065 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,066 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,068 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,068 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,070 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,071 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,072 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:10,074 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,075 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,076 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,077 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,078 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,079 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,079 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,081 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-29 14:41:10,082 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-29 14:41:10,083 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-29 14:41:10,084 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-29 14:41:10,085 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-29 14:41:10,086 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-29 14:41:10,087 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-29 14:41:10,088 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-29 14:41:10,089 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-29 14:41:10,090 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-29 14:41:10,092 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-04-29 14:41:10,092 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-04-29 14:41:10,093 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-29 14:41:10,094 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-29 14:41:10,095 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-29 14:41:10,097 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-04-29 14:41:10,097 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-04-29 14:41:10,099 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,100 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,101 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,102 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,103 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,104 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,106 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,107 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,108 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,109 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,110 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,111 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,113 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,114 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,115 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,115 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,116 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-29 14:41:10,118 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-29 14:41:10,119 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-29 14:41:10,120 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-29 14:41:10,121 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-29 14:41:10,122 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-29 14:41:10,124 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,125 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,125 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,126 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,127 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,128 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,129 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,130 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,131 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,132 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-29 14:41:10,133 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-04-29 14:41:10,134 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-04-29 14:41:10,136 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-29 14:41:10,136 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-29 14:41:10,137 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-29 14:41:10,139 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,140 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,140 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,141 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,143 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,144 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:10,145 root INFO running egg_info 2024-04-29 14:41:10,153 root INFO writing biopython.egg-info/PKG-INFO 2024-04-29 14:41:10,155 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-04-29 14:41:10,156 root INFO writing requirements to biopython.egg-info/requires.txt 2024-04-29 14:41:10,157 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-04-29 14:41:10,214 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-04-29 14:41:10,279 root INFO reading manifest template 'MANIFEST.in' 2024-04-29 14:41:10,671 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-04-29 14:41:10,682 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-04-29 14:41:10,692 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-04-29 14:41:10,701 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-04-29 14:41:10,711 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-04-29 14:41:10,735 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-04-29 14:41:10,736 root INFO adding license file 'LICENSE' 2024-04-29 14:41:10,736 root INFO adding license file 'LICENSE.rst' 2024-04-29 14:41:10,877 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-04-29 14:41:11,003 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:11,004 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:11,005 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:11,006 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:11,008 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,009 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,010 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,011 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,012 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,013 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,014 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,015 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,015 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,016 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,017 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,018 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,019 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,020 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,021 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,022 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,023 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,024 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,025 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,026 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,027 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,028 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,028 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,029 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,030 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,031 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,032 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,033 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,034 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,035 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,036 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 14:41:11,037 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:11,039 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:11,040 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:11,042 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,042 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,043 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,045 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,046 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,047 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,048 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,049 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,050 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,051 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,052 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,053 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,054 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,055 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,056 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,057 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,058 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,059 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,060 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,061 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,062 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,063 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,064 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,065 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,067 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,068 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,069 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,070 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,072 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,073 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,075 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,076 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,077 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,079 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,081 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,083 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,084 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,085 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,087 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,088 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,089 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,090 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,091 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,093 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,094 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,095 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,096 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,097 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,098 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,099 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,101 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,102 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,103 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,104 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,105 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,106 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,107 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,108 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,109 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,111 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,112 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,113 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,114 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,115 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,116 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,117 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,117 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,118 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,119 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,120 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,121 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,122 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,123 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,124 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,125 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,126 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,127 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,128 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,129 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,130 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,131 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,132 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,133 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,134 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,135 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,136 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,137 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,138 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,139 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,140 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,141 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,142 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,143 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,144 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,145 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,146 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,147 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,148 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,149 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,150 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,151 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,152 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,153 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,153 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,155 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,156 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,156 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,157 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,158 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,159 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,160 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,161 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,162 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,163 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,165 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,166 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,167 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 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root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,182 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,183 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,184 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,185 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,186 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,187 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,188 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,219 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,220 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,221 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,223 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,224 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,225 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,226 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 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2024-04-29 14:41:11,284 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,285 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,286 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,287 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,288 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,290 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,291 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,292 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,293 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,294 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,296 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,297 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,298 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,299 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,300 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,301 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,302 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,303 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,304 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,304 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,305 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,307 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,308 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,309 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,310 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,311 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,312 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,313 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,314 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,315 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,316 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,317 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,318 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,319 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,320 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,321 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,323 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,324 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,325 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,325 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,326 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,327 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,328 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,329 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,330 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,331 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,332 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,333 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,334 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,335 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,336 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,337 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,338 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,339 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,340 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,341 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-29 14:41:11,342 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-04-29 14:41:11,343 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-04-29 14:41:11,344 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:11,345 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:11,346 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:11,347 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:11,348 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:41:11,349 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-29 14:41:11,379 root INFO running build_ext 2024-04-29 14:41:11,387 root INFO building 'Bio.Align._codonaligner' extension 2024-04-29 14:41:11,388 root INFO creating build/temp.linux-riscv64-cpython-312 2024-04-29 14:41:11,388 root INFO creating build/temp.linux-riscv64-cpython-312/Bio 2024-04-29 14:41:11,388 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align 2024-04-29 14:41:11,389 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o 2024-04-29 14:41:13,890 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:13,938 root INFO building 'Bio.Align._pairwisealigner' extension 2024-04-29 14:41:13,938 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-29 14:41:42,569 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:42,793 root INFO building 'Bio.cpairwise2' extension 2024-04-29 14:41:42,793 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-29 14:41:44,239 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:44,282 root INFO building 'Bio.Nexus.cnexus' extension 2024-04-29 14:41:44,282 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus 2024-04-29 14:41:44,283 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o 2024-04-29 14:41:44,860 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:44,899 root INFO building 'Bio.motifs._pwm' extension 2024-04-29 14:41:44,899 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs 2024-04-29 14:41:44,900 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o 2024-04-29 14:41:45,667 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:45,706 root INFO building 'Bio.Cluster._cluster' extension 2024-04-29 14:41:45,707 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster 2024-04-29 14:41:45,708 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o 2024-04-29 14:41:56,062 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o 2024-04-29 14:41:59,317 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so 2024-04-29 14:41:59,404 root INFO building 'Bio.PDB.kdtrees' extension 2024-04-29 14:41:59,404 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB 2024-04-29 14:41:59,405 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o 2024-04-29 14:42:01,379 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so 2024-04-29 14:42:01,427 root INFO building 'Bio.PDB.ccealign' extension 2024-04-29 14:42:01,428 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o 2024-04-29 14:42:03,094 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so 2024-04-29 14:42:03,136 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-04-29 14:42:03,137 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-29 14:42:03,138 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-04-29 14:42:04,027 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so 2024-04-29 14:42:04,085 wheel INFO installing to build/bdist.linux-riscv64/wheel 2024-04-29 14:42:04,086 root INFO running install 2024-04-29 14:42:04,129 root INFO running install_lib 2024-04-29 14:42:04,139 root INFO creating build/bdist.linux-riscv64 2024-04-29 14:42:04,140 root INFO creating build/bdist.linux-riscv64/wheel 2024-04-29 14:42:04,141 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,141 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,142 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,143 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,144 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,145 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,146 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-29 14:42:04,147 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,148 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,149 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-04-29 14:42:04,149 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-04-29 14:42:04,151 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-29 14:42:04,151 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-29 14:42:04,152 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-29 14:42:04,154 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-29 14:42:04,155 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-29 14:42:04,157 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,157 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,158 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,159 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,160 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,162 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,163 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,164 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-29 14:42:04,165 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,166 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-04-29 14:42:04,166 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-04-29 14:42:04,167 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,168 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-29 14:42:04,169 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-29 14:42:04,170 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-29 14:42:04,171 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-29 14:42:04,172 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-29 14:42:04,173 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-04-29 14:42:04,174 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-04-29 14:42:04,175 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,176 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,178 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,178 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,179 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,180 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,181 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,182 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,183 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-29 14:42:04,184 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-29 14:42:04,185 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-29 14:42:04,186 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-29 14:42:04,186 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-29 14:42:04,188 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,188 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,189 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,191 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,192 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,193 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,195 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-29 14:42:04,196 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-29 14:42:04,197 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-29 14:42:04,197 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-29 14:42:04,199 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-29 14:42:04,200 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,201 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,202 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,203 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,205 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,206 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,207 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,208 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,209 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,209 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-29 14:42:04,211 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,212 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,212 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,213 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,214 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,216 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,217 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-29 14:42:04,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,221 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,222 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,224 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,225 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,230 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,231 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,232 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,234 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,235 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 14:42:04,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-29 14:42:04,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,244 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,247 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,250 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-29 14:42:04,252 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application 2024-04-29 14:42:04,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Application 2024-04-29 14:42:04,253 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,257 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 14:42:04,257 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 14:42:04,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 14:42:04,259 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,261 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,263 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,264 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 14:42:04,266 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-29 14:42:04,267 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-29 14:42:04,268 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-29 14:42:04,269 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-29 14:42:04,270 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,273 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,275 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 14:42:04,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,279 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-29 14:42:04,280 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 14:42:04,280 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 14:42:04,281 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 14:42:04,282 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,285 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-29 14:42:04,288 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,289 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,289 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,293 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-29 14:42:04,294 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,295 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-29 14:42:04,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-29 14:42:04,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-29 14:42:04,297 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-29 14:42:04,298 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-29 14:42:04,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-29 14:42:04,300 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-29 14:42:04,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-29 14:42:04,302 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-29 14:42:04,303 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-29 14:42:04,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,305 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-29 14:42:04,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-29 14:42:04,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-29 14:42:04,308 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-29 14:42:04,308 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-29 14:42:04,309 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-29 14:42:04,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-29 14:42:04,312 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-29 14:42:04,313 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-29 14:42:04,314 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,315 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,316 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,319 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,320 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,322 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,323 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,325 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,326 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,328 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,329 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,330 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,331 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,333 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,334 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,337 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,338 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,340 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-29 14:42:04,341 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-29 14:42:04,342 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-04-29 14:42:04,343 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-04-29 14:42:04,344 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-29 14:42:04,345 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-04-29 14:42:04,346 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-04-29 14:42:04,347 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-29 14:42:04,348 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-04-29 14:42:04,348 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-04-29 14:42:04,350 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-29 14:42:04,350 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-29 14:42:04,351 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-29 14:42:04,352 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-29 14:42:04,353 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-04-29 14:42:04,354 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-04-29 14:42:04,355 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,356 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,357 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,358 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,359 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,361 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,362 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-29 14:42:04,363 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-29 14:42:04,364 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-29 14:42:04,365 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-29 14:42:04,366 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-29 14:42:04,367 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-29 14:42:04,369 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,369 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,371 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,372 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,374 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,375 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,376 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,377 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,378 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,379 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,381 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,382 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,383 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,384 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,384 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,385 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,386 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,387 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,388 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,389 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,390 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,391 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,392 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,393 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,394 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,395 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,396 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,397 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,398 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,399 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,399 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,400 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,401 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,402 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,403 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,404 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,405 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,406 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,407 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,408 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,409 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,410 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,411 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,412 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,413 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,414 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,415 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,416 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,417 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,418 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,419 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,420 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,421 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,422 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,423 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,424 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,425 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,426 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,427 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,428 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,430 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,432 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,434 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,435 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,438 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,441 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,442 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,443 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,444 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,445 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,446 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,447 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,449 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,450 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,451 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,453 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,454 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,455 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,456 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,457 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,462 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,463 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,464 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,465 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,466 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,467 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,468 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,468 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,469 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,470 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,471 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,472 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,473 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,474 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,475 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,476 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,477 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,480 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,481 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,481 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,483 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,483 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,485 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,487 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,489 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,490 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,491 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,492 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,494 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,495 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,496 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,498 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,513 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,514 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,515 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,516 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,518 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,526 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,529 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,530 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,531 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,538 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,539 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,540 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,542 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,543 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,544 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,545 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,546 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,547 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,548 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,549 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,550 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,551 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,552 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,553 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,554 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,555 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,569 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,570 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,571 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,572 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,575 root INFO copying 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INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,588 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,589 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,590 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,592 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,593 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,600 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,601 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,603 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,604 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,605 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,607 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,608 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,608 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,611 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,613 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,615 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,616 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,618 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,619 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,621 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,622 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,624 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,625 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,626 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,627 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,628 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,629 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,630 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,632 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,633 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,634 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,636 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,639 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,640 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,641 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,642 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,643 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,644 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,645 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,646 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,647 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,648 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,652 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,652 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,653 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,655 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,656 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,657 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,658 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,659 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,660 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,661 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,661 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,662 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-29 14:42:04,663 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-29 14:42:04,665 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-04-29 14:42:04,666 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-04-29 14:42:04,667 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-04-29 14:42:04,668 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-04-29 14:42:04,669 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,670 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,671 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,672 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,673 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-29 14:42:04,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-29 14:42:04,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-29 14:42:04,676 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-29 14:42:04,676 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,678 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,679 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,681 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,683 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,684 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,685 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,686 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,689 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,690 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,691 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,692 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,694 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,695 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,696 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,697 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,698 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,699 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,700 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,702 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,703 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,704 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,705 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,706 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,707 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,710 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,711 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,712 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,713 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,714 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,715 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,716 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,717 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-29 14:42:04,718 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,720 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,720 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,721 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,723 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,725 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,727 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-29 14:42:04,729 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-04-29 14:42:04,730 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-04-29 14:42:04,731 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-29 14:42:04,732 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-29 14:42:04,733 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-29 14:42:04,734 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-04-29 14:42:04,735 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-04-29 14:42:04,736 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-29 14:42:04,737 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-29 14:42:04,737 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-29 14:42:04,738 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-29 14:42:04,739 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,741 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,741 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,742 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,743 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,745 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,746 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,747 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,748 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,749 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,749 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,750 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,751 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-29 14:42:04,753 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2024-04-29 14:42:04,753 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Medline 2024-04-29 14:42:04,754 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,755 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-04-29 14:42:04,756 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-04-29 14:42:04,757 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,758 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,759 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,760 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,760 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,762 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-29 14:42:04,763 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-29 14:42:04,764 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-29 14:42:04,764 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-29 14:42:04,765 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-29 14:42:04,766 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-29 14:42:04,767 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,768 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,769 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,770 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,772 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,773 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,774 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,775 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,776 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,776 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,777 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,778 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,779 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,780 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-29 14:42:04,781 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-29 14:42:04,782 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-29 14:42:04,783 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-29 14:42:04,784 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-29 14:42:04,785 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-29 14:42:04,786 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-29 14:42:04,788 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-29 14:42:04,788 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-29 14:42:04,789 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-29 14:42:04,790 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-29 14:42:04,791 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,792 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,793 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,794 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,795 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,796 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,797 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-29 14:42:04,798 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2024-04-29 14:42:04,799 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Compass 2024-04-29 14:42:04,800 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,801 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,803 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,805 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,806 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,808 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,809 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,810 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-04-29 14:42:04,811 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-04-29 14:42:04,812 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,813 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,814 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,815 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,815 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,816 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,817 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,818 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,819 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,819 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,820 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,821 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,822 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,823 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,823 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,824 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,825 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,826 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,827 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,829 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,830 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,832 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,832 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,833 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,834 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,836 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 14:42:04,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,839 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,840 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,843 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,845 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,846 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,847 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,848 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,850 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,851 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,852 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,854 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,855 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,856 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-29 14:42:04,857 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,858 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,860 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,862 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,863 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,864 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,865 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,866 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,868 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,869 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,870 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,872 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,872 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,876 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-29 14:42:04,877 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,879 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-29 14:42:04,880 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-29 14:42:04,881 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-29 14:42:04,882 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-29 14:42:04,883 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-29 14:42:04,885 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-29 14:42:04,889 root INFO running install_egg_info 2024-04-29 14:42:04,901 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/biopython-1.82-py3.12.egg-info 2024-04-29 14:42:04,905 root INFO running install_scripts 2024-04-29 14:42:04,923 wheel INFO creating build/bdist.linux-riscv64/wheel/biopython-1.82.dist-info/WHEEL 2024-04-29 14:42:04,925 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-1og7nu2m/biopython-1.82-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2024-04-29 14:42:04,927 wheel INFO adding 'Bio/File.py' 2024-04-29 14:42:04,929 wheel INFO adding 'Bio/LogisticRegression.py' 2024-04-29 14:42:04,931 wheel INFO adding 'Bio/MarkovModel.py' 2024-04-29 14:42:04,932 wheel INFO adding 'Bio/MaxEntropy.py' 2024-04-29 14:42:04,934 wheel INFO adding 'Bio/NaiveBayes.py' 2024-04-29 14:42:04,936 wheel INFO adding 'Bio/Seq.py' 2024-04-29 14:42:04,940 wheel INFO adding 'Bio/SeqFeature.py' 2024-04-29 14:42:04,943 wheel INFO adding 'Bio/SeqRecord.py' 2024-04-29 14:42:04,945 wheel INFO adding 'Bio/__init__.py' 2024-04-29 14:42:04,946 wheel INFO adding 'Bio/_utils.py' 2024-04-29 14:42:04,947 wheel INFO adding 'Bio/bgzf.py' 2024-04-29 14:42:04,950 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so' 2024-04-29 14:42:04,952 wheel INFO adding 'Bio/cpairwise2module.c' 2024-04-29 14:42:04,953 wheel INFO adding 'Bio/kNN.py' 2024-04-29 14:42:04,955 wheel INFO adding 'Bio/pairwise2.py' 2024-04-29 14:42:04,957 wheel INFO adding 'Bio/py.typed' 2024-04-29 14:42:04,959 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-04-29 14:42:04,960 wheel INFO adding 'Bio/Affy/__init__.py' 2024-04-29 14:42:04,962 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-04-29 14:42:04,965 wheel INFO adding 'Bio/Align/__init__.py' 2024-04-29 14:42:04,970 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-04-29 14:42:04,972 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so' 2024-04-29 14:42:04,976 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-04-29 14:42:04,985 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so' 2024-04-29 14:42:04,994 wheel INFO adding 'Bio/Align/a2m.py' 2024-04-29 14:42:04,996 wheel INFO adding 'Bio/Align/analysis.py' 2024-04-29 14:42:04,998 wheel INFO adding 'Bio/Align/bed.py' 2024-04-29 14:42:05,000 wheel INFO adding 'Bio/Align/bigbed.py' 2024-04-29 14:42:05,002 wheel INFO adding 'Bio/Align/bigmaf.py' 2024-04-29 14:42:05,004 wheel INFO adding 'Bio/Align/bigpsl.py' 2024-04-29 14:42:05,005 wheel INFO adding 'Bio/Align/chain.py' 2024-04-29 14:42:05,007 wheel INFO adding 'Bio/Align/clustal.py' 2024-04-29 14:42:05,008 wheel INFO adding 'Bio/Align/emboss.py' 2024-04-29 14:42:05,009 wheel INFO adding 'Bio/Align/exonerate.py' 2024-04-29 14:42:05,011 wheel INFO adding 'Bio/Align/fasta.py' 2024-04-29 14:42:05,012 wheel INFO adding 'Bio/Align/hhr.py' 2024-04-29 14:42:05,014 wheel INFO adding 'Bio/Align/interfaces.py' 2024-04-29 14:42:05,015 wheel INFO adding 'Bio/Align/maf.py' 2024-04-29 14:42:05,016 wheel INFO adding 'Bio/Align/mauve.py' 2024-04-29 14:42:05,018 wheel INFO adding 'Bio/Align/msf.py' 2024-04-29 14:42:05,019 wheel INFO adding 'Bio/Align/nexus.py' 2024-04-29 14:42:05,020 wheel INFO adding 'Bio/Align/phylip.py' 2024-04-29 14:42:05,021 wheel INFO adding 'Bio/Align/psl.py' 2024-04-29 14:42:05,023 wheel INFO adding 'Bio/Align/sam.py' 2024-04-29 14:42:05,025 wheel INFO adding 'Bio/Align/stockholm.py' 2024-04-29 14:42:05,027 wheel INFO adding 'Bio/Align/tabular.py' 2024-04-29 14:42:05,029 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-04-29 14:42:05,030 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-04-29 14:42:05,032 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-04-29 14:42:05,033 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-04-29 14:42:05,035 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-04-29 14:42:05,036 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-04-29 14:42:05,038 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-04-29 14:42:05,040 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-04-29 14:42:05,041 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-04-29 14:42:05,042 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2024-04-29 14:42:05,043 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2024-04-29 14:42:05,044 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2024-04-29 14:42:05,045 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2024-04-29 14:42:05,046 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2024-04-29 14:42:05,047 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2024-04-29 14:42:05,048 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2024-04-29 14:42:05,049 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2024-04-29 14:42:05,050 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2024-04-29 14:42:05,051 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2024-04-29 14:42:05,052 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2024-04-29 14:42:05,053 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2024-04-29 14:42:05,054 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2024-04-29 14:42:05,055 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2024-04-29 14:42:05,056 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2024-04-29 14:42:05,056 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2024-04-29 14:42:05,057 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2024-04-29 14:42:05,058 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2024-04-29 14:42:05,059 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2024-04-29 14:42:05,060 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2024-04-29 14:42:05,061 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2024-04-29 14:42:05,062 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2024-04-29 14:42:05,063 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2024-04-29 14:42:05,063 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2024-04-29 14:42:05,064 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2024-04-29 14:42:05,065 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2024-04-29 14:42:05,066 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2024-04-29 14:42:05,067 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2024-04-29 14:42:05,068 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2024-04-29 14:42:05,069 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2024-04-29 14:42:05,071 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2024-04-29 14:42:05,072 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2024-04-29 14:42:05,073 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2024-04-29 14:42:05,074 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2024-04-29 14:42:05,075 wheel INFO adding 'Bio/AlignIO/FastaIO.py' 2024-04-29 14:42:05,077 wheel INFO adding 'Bio/AlignIO/Interfaces.py' 2024-04-29 14:42:05,078 wheel INFO adding 'Bio/AlignIO/MafIO.py' 2024-04-29 14:42:05,080 wheel INFO adding 'Bio/AlignIO/MauveIO.py' 2024-04-29 14:42:05,082 wheel INFO adding 'Bio/AlignIO/MsfIO.py' 2024-04-29 14:42:05,083 wheel INFO adding 'Bio/AlignIO/NexusIO.py' 2024-04-29 14:42:05,084 wheel INFO adding 'Bio/AlignIO/PhylipIO.py' 2024-04-29 14:42:05,086 wheel INFO adding 'Bio/AlignIO/StockholmIO.py' 2024-04-29 14:42:05,087 wheel INFO adding 'Bio/AlignIO/__init__.py' 2024-04-29 14:42:05,089 wheel INFO adding 'Bio/Alphabet/__init__.py' 2024-04-29 14:42:05,090 wheel INFO adding 'Bio/Application/__init__.py' 2024-04-29 14:42:05,093 wheel INFO adding 'Bio/Blast/Applications.py' 2024-04-29 14:42:05,095 wheel INFO adding 'Bio/Blast/NCBIWWW.py' 2024-04-29 14:42:05,097 wheel INFO adding 'Bio/Blast/NCBIXML.py' 2024-04-29 14:42:05,099 wheel INFO adding 'Bio/Blast/Record.py' 2024-04-29 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 7.3 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r1.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 12.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r1.apk >>> py3-biopython: Build complete at Mon, 29 Apr 2024 14:42:18 +0000 elapsed time 0h 1m 24s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/30) Purging .makedepends-py3-biopython (20240429.144100) (2/30) Purging py3-gpep517-pyc (15-r2) (3/30) Purging py3-gpep517 (15-r2) (4/30) Purging py3-installer-pyc (0.7.0-r2) (5/30) Purging py3-installer (0.7.0-r2) (6/30) Purging py3-setuptools-pyc (69.5.1-r0) (7/30) Purging py3-setuptools (69.5.1-r0) (8/30) Purging py3-wheel-pyc (0.42.0-r1) (9/30) Purging py3-wheel (0.42.0-r1) (10/30) Purging py3-packaging-pyc (24.0-r1) (11/30) Purging py3-packaging (24.0-r1) (12/30) Purging py3-parsing-pyc (3.1.2-r1) (13/30) Purging py3-parsing (3.1.2-r1) (14/30) Purging py3-numpy-dev (1.25.2-r1) (15/30) Purging py3-numpy-pyc (1.25.2-r1) (16/30) Purging py3-numpy (1.25.2-r1) (17/30) Purging openblas (0.3.27-r0) (18/30) Purging python3-dev (3.12.3-r1) (19/30) Purging python3-pyc (3.12.3-r1) (20/30) Purging python3-pycache-pyc0 (3.12.3-r1) (21/30) Purging pyc (3.12.3-r1) (22/30) Purging python3 (3.12.3-r1) (23/30) Purging gdbm (1.23-r1) (24/30) Purging libbz2 (1.0.8-r6) (25/30) Purging libffi (3.4.6-r0) (26/30) Purging libpanelw (6.4_p20240330-r0) (27/30) Purging mpdecimal (4.0.0-r0) (28/30) Purging readline (8.2.10-r0) (29/30) Purging sqlite-libs (3.45.3-r0) (30/30) Purging xz-libs (5.6.1-r3) Executing busybox-1.36.1-r26.trigger OK: 228 MiB in 101 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...