>>> py3-bioframe: Building community/py3-bioframe 0.6.4-r1 (using abuild 3.13.0-r3) started Mon, 06 May 2024 13:15:27 +0000 >>> py3-bioframe: Checking sanity of /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/113) Installing gdbm (1.23-r1) (2/113) Installing mpdecimal (4.0.0-r0) (3/113) Installing libpanelw (6.4_p20240420-r0) (4/113) Installing readline (8.2.10-r0) (5/113) Installing sqlite-libs (3.45.3-r0) (6/113) Installing python3 (3.12.3-r1) (7/113) Installing python3-pycache-pyc0 (3.12.3-r1) (8/113) Installing pyc (3.12.3-r1) (9/113) Installing py3-cairo-pyc (1.26.0-r1) (10/113) Installing py3-certifi (2024.2.2-r1) (11/113) Installing py3-certifi-pyc (2024.2.2-r1) (12/113) Installing libquadmath (13.2.1_git20240309-r0) (13/113) Installing libgfortran (13.2.1_git20240309-r0) (14/113) Installing openblas (0.3.27-r0) (15/113) Installing py3-numpy (1.25.2-r1) (16/113) Installing py3-numpy-pyc (1.25.2-r1) (17/113) Installing py3-contourpy (1.2.1-r1) (18/113) Installing py3-contourpy-pyc (1.2.1-r1) (19/113) Installing py3-cycler (0.12.1-r1) (20/113) Installing py3-cycler-pyc (0.12.1-r1) (21/113) Installing py3-six (1.16.0-r9) (22/113) Installing py3-six-pyc (1.16.0-r9) (23/113) Installing py3-dateutil (2.9.0-r1) (24/113) Installing py3-dateutil-pyc (2.9.0-r1) (25/113) Installing py3-fonttools (4.51.0-r1) (26/113) Installing py3-fonttools-pyc (4.51.0-r1) (27/113) Installing py3-kiwisolver (1.4.5-r1) (28/113) Installing py3-kiwisolver-pyc (1.4.5-r1) (29/113) Installing py3-parsing (3.1.2-r1) (30/113) Installing py3-parsing-pyc (3.1.2-r1) (31/113) Installing py3-packaging (24.0-r1) (32/113) Installing py3-packaging-pyc (24.0-r1) (33/113) Installing libpng (1.6.43-r0) (34/113) Installing freetype (2.13.2-r0) (35/113) Installing libimagequant (4.2.2-r0) (36/113) Installing libjpeg-turbo (3.0.2-r0) (37/113) Installing lcms2 (2.16-r0) (38/113) Installing openjpeg (2.5.2-r0) (39/113) Installing libsharpyuv (1.3.2-r0) (40/113) Installing libwebp (1.3.2-r0) (41/113) Installing tiff (4.6.0t-r0) (42/113) Installing libwebpdemux (1.3.2-r0) (43/113) Installing libwebpmux (1.3.2-r0) (44/113) Installing libxau (1.0.11-r4) (45/113) Installing libmd (1.1.0-r0) (46/113) Installing libbsd (0.12.2-r0) (47/113) Installing libxdmcp (1.1.5-r1) (48/113) Installing libxcb (1.16.1-r0) (49/113) Installing py3-pillow (10.3.0-r2) (50/113) Installing py3-pillow-pyc (10.3.0-r2) (51/113) Installing py3-tz (2024.1-r1) (52/113) Installing py3-tz-pyc (2024.1-r1) (53/113) Installing tzdata (2024a-r1) (54/113) Installing tcl (8.6.14-r0) (55/113) Installing libx11 (1.8.9-r1) (56/113) Installing libxrender (0.9.11-r5) (57/113) Installing fontconfig (2.15.0-r1) (58/113) Installing libxft (2.3.8-r3) (59/113) Installing tk (8.6.14-r0) (60/113) Installing python3-tkinter (3.12.3-r0) (61/113) Installing python3-tkinter-pyc (3.12.3-r0) (62/113) Installing py3-matplotlib-pyc (3.7.3-r1) (63/113) Installing python3-pyc (3.12.3-r1) (64/113) Installing libxext (1.3.6-r2) (65/113) Installing pixman (0.43.2-r0) (66/113) Installing cairo (1.18.0-r0) (67/113) Installing py3-cairo (1.26.0-r1) (68/113) Installing qhull (2020.2-r3) (69/113) Installing py3-matplotlib (3.7.3-r1) (70/113) Installing py3-pandas (2.0.3-r1) (71/113) Installing py3-pandas-pyc (2.0.3-r1) (72/113) Installing yaml (0.2.5-r2) (73/113) Installing py3-yaml (6.0.1-r3) (74/113) Installing py3-yaml-pyc (6.0.1-r3) (75/113) Installing py3-charset-normalizer (3.3.2-r1) (76/113) Installing py3-charset-normalizer-pyc (3.3.2-r1) (77/113) Installing py3-idna (3.7-r0) (78/113) Installing py3-idna-pyc (3.7-r0) (79/113) Installing py3-urllib3 (1.26.18-r1) (80/113) Installing py3-urllib3-pyc (1.26.18-r1) (81/113) Installing py3-requests (2.31.0-r2) (82/113) Installing py3-requests-pyc (2.31.0-r2) (83/113) Installing py3-typing-extensions (4.11.0-r1) (84/113) Installing py3-typing-extensions-pyc (4.11.0-r1) (85/113) Installing py3-setuptools (69.5.1-r0) (86/113) Installing py3-setuptools-pyc (69.5.1-r0) (87/113) Installing py3-installer (0.7.0-r2) (88/113) Installing py3-installer-pyc (0.7.0-r2) (89/113) Installing py3-gpep517 (15-r2) (90/113) Installing py3-gpep517-pyc (15-r2) (91/113) Installing py3-editables (0.5-r2) (92/113) Installing py3-editables-pyc (0.5-r2) (93/113) Installing py3-pathspec (0.12.1-r2) (94/113) Installing py3-pathspec-pyc (0.12.1-r2) (95/113) Installing py3-pluggy (1.5.0-r0) (96/113) Installing py3-pluggy-pyc (1.5.0-r0) (97/113) Installing py3-trove-classifiers (2024.3.3-r2) (98/113) Installing py3-trove-classifiers-pyc (2024.3.3-r2) (99/113) Installing py3-hatchling (1.24.2-r0) (100/113) Installing py3-hatchling-pyc (1.24.2-r0) (101/113) Installing py3-wheel (0.42.0-r1) (102/113) Installing py3-wheel-pyc (0.42.0-r1) (103/113) Installing py3-execnet (2.1.1-r0) (104/113) Installing py3-execnet-pyc (2.1.1-r0) (105/113) Installing py3-iniconfig (2.0.0-r1) (106/113) Installing py3-iniconfig-pyc (2.0.0-r1) (107/113) Installing py3-py (1.11.0-r3) (108/113) Installing py3-py-pyc (1.11.0-r3) (109/113) Installing py3-pytest (8.2.0-r0) (110/113) Installing py3-pytest-pyc (8.2.0-r0) (111/113) Installing py3-pytest-xdist (3.6.1-r0) (112/113) Installing py3-pytest-xdist-pyc (3.6.1-r0) (113/113) Installing .makedepends-py3-bioframe (20240506.131531) Executing busybox-1.36.1-r26.trigger OK: 1941 MiB in 236 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/bioframe-0.6.4.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.6.4/bioframe-0.6.4.tar.gz Connecting to github.com (140.82.121.4:443) Connecting to codeload.github.com (140.82.121.9:443) saving to '/var/cache/distfiles/v3.20/bioframe-0.6.4.tar.gz.part' bioframe-0.6.4.tar.g 100% |********************************| 937k 0:00:00 ETA '/var/cache/distfiles/v3.20/bioframe-0.6.4.tar.gz.part' saved >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/bioframe-0.6.4.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.6.4.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/v3.20/bioframe-0.6.4.tar.gz... 2024-05-06 13:15:36,918 gpep517 INFO Building wheel via backend hatchling.build 2024-05-06 13:15:37,075 gpep517 INFO The backend produced .dist/bioframe-0.6.4-py2.py3-none-any.whl bioframe-0.6.4-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.2.0, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.6.4 configfile: pyproject.toml plugins: xdist-3.6.1 created: 32/32 workers 32 workers [59 items] ...s...s......s............................................ [100%] =============================== warnings summary =============================== tests/test_assembly_info.py: 6 warnings tests/test_resources.py: 10 warnings /usr/lib/python3.12/site-packages/pandas/core/computation/expr.py:557: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return self.const_type(node.n, self.env) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 56 passed, 3 skipped, 16 warnings in 10.03s ================== >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 320.0 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.6.4-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 304.0 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.6.4-r1.apk >>> py3-bioframe: Build complete at Mon, 06 May 2024 13:15:49 +0000 elapsed time 0h 0m 22s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/113) Purging .makedepends-py3-bioframe (20240506.131531) (2/113) Purging py3-matplotlib-pyc (3.7.3-r1) (3/113) Purging py3-matplotlib (3.7.3-r1) (4/113) Purging py3-cairo-pyc (1.26.0-r1) (5/113) Purging py3-cairo (1.26.0-r1) (6/113) Purging py3-contourpy-pyc (1.2.1-r1) (7/113) Purging py3-contourpy (1.2.1-r1) (8/113) Purging py3-cycler-pyc (0.12.1-r1) (9/113) Purging py3-cycler (0.12.1-r1) (10/113) Purging py3-fonttools-pyc (4.51.0-r1) (11/113) Purging py3-fonttools (4.51.0-r1) (12/113) Purging py3-kiwisolver-pyc (1.4.5-r1) (13/113) Purging py3-kiwisolver (1.4.5-r1) (14/113) Purging py3-pillow-pyc (10.3.0-r2) (15/113) Purging py3-pillow (10.3.0-r2) (16/113) Purging python3-tkinter-pyc (3.12.3-r0) (17/113) Purging python3-tkinter (3.12.3-r0) (18/113) Purging py3-pandas-pyc (2.0.3-r1) (19/113) Purging py3-pandas (2.0.3-r1) (20/113) Purging py3-dateutil-pyc (2.9.0-r1) (21/113) Purging py3-dateutil (2.9.0-r1) (22/113) Purging py3-six-pyc (1.16.0-r9) (23/113) Purging py3-six (1.16.0-r9) (24/113) Purging py3-numpy-pyc (1.25.2-r1) (25/113) Purging py3-numpy (1.25.2-r1) (26/113) Purging openblas (0.3.27-r0) (27/113) Purging py3-tz-pyc (2024.1-r1) (28/113) Purging py3-tz (2024.1-r1) (29/113) Purging py3-yaml-pyc (6.0.1-r3) (30/113) Purging py3-yaml (6.0.1-r3) (31/113) Purging py3-requests-pyc (2.31.0-r2) (32/113) Purging py3-requests (2.31.0-r2) (33/113) Purging py3-certifi-pyc (2024.2.2-r1) (34/113) Purging py3-certifi (2024.2.2-r1) (35/113) Purging py3-charset-normalizer-pyc (3.3.2-r1) (36/113) Purging py3-charset-normalizer (3.3.2-r1) (37/113) Purging py3-idna-pyc (3.7-r0) (38/113) Purging py3-idna (3.7-r0) (39/113) Purging py3-urllib3-pyc (1.26.18-r1) (40/113) Purging py3-urllib3 (1.26.18-r1) (41/113) Purging py3-typing-extensions-pyc (4.11.0-r1) (42/113) Purging py3-typing-extensions (4.11.0-r1) (43/113) Purging py3-setuptools-pyc (69.5.1-r0) (44/113) Purging py3-setuptools (69.5.1-r0) (45/113) Purging py3-gpep517-pyc (15-r2) (46/113) Purging py3-gpep517 (15-r2) (47/113) Purging py3-installer-pyc (0.7.0-r2) (48/113) Purging py3-installer (0.7.0-r2) (49/113) Purging py3-hatchling-pyc (1.24.2-r0) (50/113) Purging py3-hatchling (1.24.2-r0) (51/113) Purging py3-editables-pyc (0.5-r2) (52/113) Purging py3-editables (0.5-r2) (53/113) Purging py3-pathspec-pyc (0.12.1-r2) (54/113) Purging py3-pathspec (0.12.1-r2) (55/113) Purging py3-trove-classifiers-pyc (2024.3.3-r2) (56/113) Purging py3-trove-classifiers (2024.3.3-r2) (57/113) Purging py3-wheel-pyc (0.42.0-r1) (58/113) Purging py3-wheel (0.42.0-r1) (59/113) Purging py3-pytest-xdist-pyc (3.6.1-r0) (60/113) Purging py3-pytest-xdist (3.6.1-r0) (61/113) Purging py3-execnet-pyc (2.1.1-r0) (62/113) Purging py3-execnet (2.1.1-r0) (63/113) Purging py3-pytest-pyc (8.2.0-r0) (64/113) Purging py3-pytest (8.2.0-r0) (65/113) Purging py3-iniconfig-pyc (2.0.0-r1) (66/113) Purging py3-iniconfig (2.0.0-r1) (67/113) Purging py3-packaging-pyc (24.0-r1) (68/113) Purging py3-packaging (24.0-r1) (69/113) Purging py3-parsing-pyc (3.1.2-r1) (70/113) Purging py3-parsing (3.1.2-r1) (71/113) Purging py3-pluggy-pyc (1.5.0-r0) (72/113) Purging py3-pluggy (1.5.0-r0) (73/113) Purging py3-py-pyc (1.11.0-r3) (74/113) Purging py3-py (1.11.0-r3) (75/113) Purging python3-pyc (3.12.3-r1) (76/113) Purging python3-pycache-pyc0 (3.12.3-r1) (77/113) Purging pyc (3.12.3-r1) (78/113) Purging python3 (3.12.3-r1) (79/113) Purging cairo (1.18.0-r0) (80/113) Purging gdbm (1.23-r1) (81/113) Purging lcms2 (2.16-r0) (82/113) Purging libgfortran (13.2.1_git20240309-r0) (83/113) Purging libimagequant (4.2.2-r0) (84/113) Purging libpanelw (6.4_p20240420-r0) (85/113) Purging libquadmath (13.2.1_git20240309-r0) (86/113) Purging libwebpdemux (1.3.2-r0) (87/113) Purging libwebpmux (1.3.2-r0) (88/113) Purging libxext (1.3.6-r2) (89/113) Purging mpdecimal (4.0.0-r0) (90/113) Purging openjpeg (2.5.2-r0) (91/113) Purging pixman (0.43.2-r0) (92/113) Purging qhull (2020.2-r3) (93/113) Purging readline (8.2.10-r0) (94/113) Purging sqlite-libs (3.45.3-r0) (95/113) Purging tiff (4.6.0t-r0) (96/113) Purging tk (8.6.14-r0) (97/113) Purging yaml (0.2.5-r2) (98/113) Purging libxft (2.3.8-r3) (99/113) Purging fontconfig (2.15.0-r1) (100/113) Purging freetype (2.13.2-r0) (101/113) Purging libxrender (0.9.11-r5) (102/113) Purging libx11 (1.8.9-r1) (103/113) Purging libxcb (1.16.1-r0) (104/113) Purging libxdmcp (1.1.5-r1) (105/113) Purging libbsd (0.12.2-r0) (106/113) Purging libjpeg-turbo (3.0.2-r0) (107/113) Purging libmd (1.1.0-r0) (108/113) Purging libpng (1.6.43-r0) (109/113) Purging libwebp (1.3.2-r0) (110/113) Purging libsharpyuv (1.3.2-r0) (111/113) Purging libxau (1.0.11-r4) (112/113) Purging tcl (8.6.14-r0) (113/113) Purging tzdata (2024a-r1) Executing busybox-1.36.1-r26.trigger OK: 1693 MiB in 123 packages >>> py3-bioframe: Updating the community/x86_64 repository index... >>> py3-bioframe: Signing the index...