>>> py3-biopython: Building community/py3-biopython 1.82-r1 (using abuild 3.13.0-r3) started Mon, 29 Apr 2024 12:50:54 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/32) Installing libquadmath (13.2.1_git20240309-r0) (2/32) Installing libgfortran (13.2.1_git20240309-r0) (3/32) Installing openblas (0.3.27-r0) (4/32) Installing libbz2 (1.0.8-r6) (5/32) Installing libffi (3.4.6-r0) (6/32) Installing gdbm (1.23-r1) (7/32) Installing xz-libs (5.6.1-r3) (8/32) Installing mpdecimal (4.0.0-r0) (9/32) Installing libpanelw (6.4_p20240330-r0) (10/32) Installing readline (8.2.10-r0) (11/32) Installing sqlite-libs (3.45.3-r0) (12/32) Installing python3 (3.12.3-r1) (13/32) Installing python3-pycache-pyc0 (3.12.3-r1) (14/32) Installing pyc (3.12.3-r1) (15/32) Installing py3-numpy-pyc (1.25.2-r1) (16/32) Installing python3-pyc (3.12.3-r1) (17/32) Installing py3-numpy (1.25.2-r1) (18/32) Installing py3-installer (0.7.0-r2) (19/32) Installing py3-installer-pyc (0.7.0-r2) (20/32) Installing py3-gpep517 (15-r2) (21/32) Installing py3-gpep517-pyc (15-r2) (22/32) Installing py3-parsing (3.1.2-r1) (23/32) Installing py3-parsing-pyc (3.1.2-r1) (24/32) Installing py3-packaging (24.0-r1) (25/32) Installing py3-packaging-pyc (24.0-r1) (26/32) Installing py3-setuptools (69.5.1-r0) (27/32) Installing py3-setuptools-pyc (69.5.1-r0) (28/32) Installing py3-wheel (0.42.0-r1) (29/32) Installing py3-wheel-pyc (0.42.0-r1) (30/32) Installing py3-numpy-dev (1.25.2-r1) (31/32) Installing python3-dev (3.12.3-r1) (32/32) Installing .makedepends-py3-biopython (20240429.125058) Executing busybox-1.36.1-r26.trigger OK: 672 MiB in 139 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.82.tar.gz Connecting to files.pythonhosted.org (151.101.36.223:443) Connecting to files.pythonhosted.org (151.101.36.223:443) saving to '/var/cache/distfiles/v3.20/biopython-1.82.tar.gz.part' biopython-1.82.tar.g 32% |********** | 6144k 0:00:02 ETA biopython-1.82.tar.g 75% |************************ | 14.0M 0:00:00 ETA biopython-1.82.tar.g 100% |********************************| 18.5M 0:00:00 ETA '/var/cache/distfiles/v3.20/biopython-1.82.tar.gz.part' saved >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/v3.20/biopython-1.82.tar.gz... 2024-04-29 12:51:04,251 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-04-29 12:51:04,293 root INFO running bdist_wheel 2024-04-29 12:51:04,318 root INFO running build 2024-04-29 12:51:04,318 root INFO running build_py 2024-04-29 12:51:04,323 root INFO creating build 2024-04-29 12:51:04,323 root INFO creating build/lib.linux-x86_64-cpython-312 2024-04-29 12:51:04,323 root INFO creating build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,323 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,324 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,324 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,325 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,325 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,325 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,326 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,326 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,327 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,327 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,328 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,328 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,328 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,329 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-29 12:51:04,329 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-29 12:51:04,329 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-29 12:51:04,330 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,330 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,331 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,331 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,331 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,332 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,332 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,332 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,333 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,333 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,333 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,334 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,334 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,334 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,335 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,335 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,336 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,336 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,336 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,337 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,337 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,337 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,338 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,338 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,338 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,339 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,339 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,339 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,340 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,340 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,340 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,341 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,341 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,341 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,342 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,342 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-29 12:51:04,342 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-04-29 12:51:04,343 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-04-29 12:51:04,343 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,343 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,344 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,344 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,344 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,345 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,345 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,345 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,345 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,346 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,346 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,346 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-29 12:51:04,347 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-04-29 12:51:04,347 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-04-29 12:51:04,347 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Application 2024-04-29 12:51:04,348 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Application 2024-04-29 12:51:04,348 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,348 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,349 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,349 root INFO copying Bio/Blast/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,349 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,350 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-29 12:51:04,350 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-04-29 12:51:04,350 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-04-29 12:51:04,351 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:04,351 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:04,351 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-29 12:51:04,352 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-29 12:51:04,352 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-29 12:51:04,352 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-29 12:51:04,353 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-04-29 12:51:04,353 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-04-29 12:51:04,353 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-29 12:51:04,354 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-29 12:51:04,354 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-29 12:51:04,354 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-29 12:51:04,355 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-29 12:51:04,355 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-29 12:51:04,355 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-29 12:51:04,356 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-29 12:51:04,356 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-29 12:51:04,356 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-29 12:51:04,357 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-29 12:51:04,357 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-29 12:51:04,357 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-29 12:51:04,358 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,358 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,358 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,359 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,359 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,359 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,359 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-29 12:51:04,360 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-29 12:51:04,360 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-29 12:51:04,360 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-29 12:51:04,361 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-29 12:51:04,361 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-29 12:51:04,362 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-29 12:51:04,362 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-29 12:51:04,362 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-29 12:51:04,363 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,363 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,363 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,363 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,364 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,364 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,364 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,365 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-29 12:51:04,365 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,365 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,366 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,366 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,366 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,367 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,367 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,367 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,368 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,368 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,368 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,369 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,369 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:04,369 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,370 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,370 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,370 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,371 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,371 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-29 12:51:04,371 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-29 12:51:04,371 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-29 12:51:04,372 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-29 12:51:04,372 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-04-29 12:51:04,372 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-04-29 12:51:04,373 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-04-29 12:51:04,373 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-04-29 12:51:04,373 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-04-29 12:51:04,374 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-04-29 12:51:04,374 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-04-29 12:51:04,374 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-04-29 12:51:04,375 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,375 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-29 12:51:04,375 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-29 12:51:04,375 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-29 12:51:04,376 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-29 12:51:04,376 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-29 12:51:04,376 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-29 12:51:04,377 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-29 12:51:04,377 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-29 12:51:04,377 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-04-29 12:51:04,378 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-04-29 12:51:04,378 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,378 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,379 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,379 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,379 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,380 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,380 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,380 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,380 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,381 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,381 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,381 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,382 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-29 12:51:04,382 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-29 12:51:04,382 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-29 12:51:04,383 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-29 12:51:04,383 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-29 12:51:04,383 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-29 12:51:04,384 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,384 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,384 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,385 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,385 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,385 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,386 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-29 12:51:04,386 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-29 12:51:04,386 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-29 12:51:04,387 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-29 12:51:04,387 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-04-29 12:51:04,387 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-04-29 12:51:04,388 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-29 12:51:04,388 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-29 12:51:04,388 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-29 12:51:04,388 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-29 12:51:04,389 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,390 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,390 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,390 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,391 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,391 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,391 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,392 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,392 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,392 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,393 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,393 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,393 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,393 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,394 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,394 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,394 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,395 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,395 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,395 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,395 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,396 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,396 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,397 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,397 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,398 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,398 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,398 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,398 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,399 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,399 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,399 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,400 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,400 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,400 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,401 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,401 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,401 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,402 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-29 12:51:04,402 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-29 12:51:04,402 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-29 12:51:04,402 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-29 12:51:04,403 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-04-29 12:51:04,403 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-04-29 12:51:04,404 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,404 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,404 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,405 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,405 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,405 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-29 12:51:04,406 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-29 12:51:04,406 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-29 12:51:04,406 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-29 12:51:04,407 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-29 12:51:04,407 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-29 12:51:04,408 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,409 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,409 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,409 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,410 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,410 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,410 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,411 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-29 12:51:04,411 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,411 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,412 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,412 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,412 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,413 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-29 12:51:04,413 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,414 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,414 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,414 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,415 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,415 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-29 12:51:04,415 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 12:51:04,416 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 12:51:04,416 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 12:51:04,416 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-29 12:51:04,417 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:04,417 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:04,417 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:04,418 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,418 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,418 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,419 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,419 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,419 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,419 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-29 12:51:04,420 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,420 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,420 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,421 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,421 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,421 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:04,422 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:04,422 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:04,422 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:04,423 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,423 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,424 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,424 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,424 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,425 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,425 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,425 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,426 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,426 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,426 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,427 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,427 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,427 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,428 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,428 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,428 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,429 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,429 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,429 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,430 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,430 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,430 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,431 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,431 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,431 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,432 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,432 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,432 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,433 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,433 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-29 12:51:04,433 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-29 12:51:04,434 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-29 12:51:04,434 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-29 12:51:04,434 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-29 12:51:04,435 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-29 12:51:04,435 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-29 12:51:04,435 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-29 12:51:04,435 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-29 12:51:04,436 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-29 12:51:04,436 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-04-29 12:51:04,436 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-04-29 12:51:04,437 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-29 12:51:04,437 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-29 12:51:04,437 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-29 12:51:04,438 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-04-29 12:51:04,438 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-04-29 12:51:04,439 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,439 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,439 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,440 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,440 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,440 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,441 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,441 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,452 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,453 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,464 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,464 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,465 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,465 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,465 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,466 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,466 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-29 12:51:04,466 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-29 12:51:04,470 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-29 12:51:04,470 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-29 12:51:04,470 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-29 12:51:04,471 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-29 12:51:04,471 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,472 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,472 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,472 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,473 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,473 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,473 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,473 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,474 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,474 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-29 12:51:04,475 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-04-29 12:51:04,475 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-04-29 12:51:04,475 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-29 12:51:04,475 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-29 12:51:04,476 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-29 12:51:04,476 root INFO creating build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,476 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,477 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,477 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,477 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,478 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,478 root INFO running egg_info 2024-04-29 12:51:04,481 root INFO writing biopython.egg-info/PKG-INFO 2024-04-29 12:51:04,482 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-04-29 12:51:04,482 root INFO writing requirements to biopython.egg-info/requires.txt 2024-04-29 12:51:04,483 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-04-29 12:51:04,505 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-04-29 12:51:04,529 root INFO reading manifest template 'MANIFEST.in' 2024-04-29 12:51:04,683 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-04-29 12:51:04,688 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-04-29 12:51:04,693 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-04-29 12:51:04,698 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-04-29 12:51:04,702 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-04-29 12:51:04,710 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-04-29 12:51:04,711 root INFO adding license file 'LICENSE' 2024-04-29 12:51:04,711 root INFO adding license file 'LICENSE.rst' 2024-04-29 12:51:04,762 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-04-29 12:51:04,811 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,811 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,812 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,812 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,813 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,813 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,813 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,814 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,814 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,814 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,815 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,815 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,815 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,815 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,816 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,816 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,817 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,817 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,817 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,818 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,818 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,818 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,818 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,819 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,819 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,819 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,820 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,820 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,820 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,820 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,821 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,821 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,821 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,822 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,822 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-29 12:51:04,822 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:04,823 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:04,823 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:04,824 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,824 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,824 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,825 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,825 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,825 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,825 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,826 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,826 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,826 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,827 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,827 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,827 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,828 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,828 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,828 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,829 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,829 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,829 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,830 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,830 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,830 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,830 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,831 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,831 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,831 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,832 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,832 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,833 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,833 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,833 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,834 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,834 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,835 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,835 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,836 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,836 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,837 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,837 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,837 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,838 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,838 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,838 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,839 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,839 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,839 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,840 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,840 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,840 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,841 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,841 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,841 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,842 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,842 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,842 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,843 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,843 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,843 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,844 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,844 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,844 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,845 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,845 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,845 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,845 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,846 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,846 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,846 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,847 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,847 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,847 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,848 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,848 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,848 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,848 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,849 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,849 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,849 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,850 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,850 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,850 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,851 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,851 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,851 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,852 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,852 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,852 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,852 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,853 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,853 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,853 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,854 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,854 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,854 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,855 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,855 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,855 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,855 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,856 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,856 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,856 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,857 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,857 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,857 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,858 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,858 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,858 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,858 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,859 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,859 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,859 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,860 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,860 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,860 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,861 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,861 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,861 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,862 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,862 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,862 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,862 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,863 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,863 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,863 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,864 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,864 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,864 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,864 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,865 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,865 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,865 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,866 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,866 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,866 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,867 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,867 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,867 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,867 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,868 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,868 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,868 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,869 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,869 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,869 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,870 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,870 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,870 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,871 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,871 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,871 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,872 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,872 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,872 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,872 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,873 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,873 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,873 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,874 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,874 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,874 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,875 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,875 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,875 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,876 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,876 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,876 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,876 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,877 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,877 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,877 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,878 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,878 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,878 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,879 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,879 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,879 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,880 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,880 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,880 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,881 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,881 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,881 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,882 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,882 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,882 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,882 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,883 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,883 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,884 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,884 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,885 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,885 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,885 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,885 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,886 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,886 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,886 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,887 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,887 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,887 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,887 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,888 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,888 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,888 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,889 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,889 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,889 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,890 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,890 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,890 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,891 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,891 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,891 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,891 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,892 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,892 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,892 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,893 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,893 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,893 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,894 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,894 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,894 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,894 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,895 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,895 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,895 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,896 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,896 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,896 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,897 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,897 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,897 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,898 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,898 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,898 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,899 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,899 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,900 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,900 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,900 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,900 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,901 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,901 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,902 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,902 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,902 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,902 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,903 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,903 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,903 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,904 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,904 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,904 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,905 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,905 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,905 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,906 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,906 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,906 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,906 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,907 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,907 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,907 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,908 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,908 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,908 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,909 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,909 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,909 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,910 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,910 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,910 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,911 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,911 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,911 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,911 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,912 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,912 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,912 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,913 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,913 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,913 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,914 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,914 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,914 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,914 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,915 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-29 12:51:04,915 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-04-29 12:51:04,915 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-04-29 12:51:04,916 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:04,916 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:04,916 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,917 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:04,917 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:04,917 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-29 12:51:04,928 root INFO running build_ext 2024-04-29 12:51:04,931 root INFO building 'Bio.Align._codonaligner' extension 2024-04-29 12:51:04,932 root INFO creating build/temp.linux-x86_64-cpython-312 2024-04-29 12:51:04,932 root INFO creating build/temp.linux-x86_64-cpython-312/Bio 2024-04-29 12:51:04,932 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Align 2024-04-29 12:51:04,932 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o 2024-04-29 12:51:05,724 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:05,743 root INFO building 'Bio.Align._pairwisealigner' extension 2024-04-29 12:51:05,743 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-29 12:51:13,453 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:13,483 root INFO building 'Bio.cpairwise2' extension 2024-04-29 12:51:13,483 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-29 12:51:14,082 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:14,103 root INFO building 'Bio.Nexus.cnexus' extension 2024-04-29 12:51:14,103 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Nexus 2024-04-29 12:51:14,103 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o 2024-04-29 12:51:14,392 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:14,412 root INFO building 'Bio.motifs._pwm' extension 2024-04-29 12:51:14,412 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/motifs 2024-04-29 12:51:14,412 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o 2024-04-29 12:51:14,705 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:14,725 root INFO building 'Bio.Cluster._cluster' extension 2024-04-29 12:51:14,726 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Cluster 2024-04-29 12:51:14,726 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o 2024-04-29 12:51:18,203 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o 2024-04-29 12:51:19,149 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:19,173 root INFO building 'Bio.PDB.kdtrees' extension 2024-04-29 12:51:19,174 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/PDB 2024-04-29 12:51:19,174 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o 2024-04-29 12:51:20,038 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:20,059 root INFO building 'Bio.PDB.ccealign' extension 2024-04-29 12:51:20,059 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o 2024-04-29 12:51:20,734 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:20,755 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-04-29 12:51:20,755 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-29 12:51:20,756 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-04-29 12:51:21,199 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so 2024-04-29 12:51:21,232 wheel INFO installing to build/bdist.linux-x86_64/wheel 2024-04-29 12:51:21,232 root INFO running install 2024-04-29 12:51:21,259 root INFO running install_lib 2024-04-29 12:51:21,265 root INFO creating build/bdist.linux-x86_64 2024-04-29 12:51:21,266 root INFO creating build/bdist.linux-x86_64/wheel 2024-04-29 12:51:21,266 root INFO creating build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,266 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,267 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-29 12:51:21,267 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-29 12:51:21,268 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-29 12:51:21,268 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-29 12:51:21,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-29 12:51:21,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-29 12:51:21,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-29 12:51:21,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-29 12:51:21,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-29 12:51:21,271 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-04-29 12:51:21,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-04-29 12:51:21,272 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass 2024-04-29 12:51:21,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass 2024-04-29 12:51:21,273 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,283 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,287 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-29 12:51:21,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-29 12:51:21,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-29 12:51:21,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-29 12:51:21,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-29 12:51:21,291 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-29 12:51:21,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-29 12:51:21,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-29 12:51:21,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-29 12:51:21,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-29 12:51:21,292 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-29 12:51:21,293 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-04-29 12:51:21,293 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-04-29 12:51:21,294 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,313 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,313 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,313 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,363 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,363 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,363 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-29 12:51:21,380 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-29 12:51:21,380 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-29 12:51:21,380 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-04-29 12:51:21,380 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,381 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,381 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,381 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,382 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,382 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-29 12:51:21,382 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-04-29 12:51:21,382 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-29 12:51:21,383 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-29 12:51:21,383 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-29 12:51:21,383 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-29 12:51:21,384 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-29 12:51:21,384 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application 2024-04-29 12:51:21,384 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Application 2024-04-29 12:51:21,385 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-29 12:51:21,385 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-29 12:51:21,385 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-29 12:51:21,385 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-04-29 12:51:21,386 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-04-29 12:51:21,386 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,386 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,386 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,387 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,387 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,387 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-29 12:51:21,388 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-29 12:51:21,388 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-29 12:51:21,388 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-29 12:51:21,388 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,389 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,389 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,389 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,389 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,390 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-29 12:51:21,390 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-29 12:51:21,390 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-29 12:51:21,391 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-29 12:51:21,391 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-29 12:51:21,391 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-29 12:51:21,391 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-04-29 12:51:21,392 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-04-29 12:51:21,392 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-04-29 12:51:21,392 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-04-29 12:51:21,392 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-04-29 12:51:21,393 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-04-29 12:51:21,393 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-29 12:51:21,393 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-29 12:51:21,393 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-29 12:51:21,394 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-29 12:51:21,394 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-29 12:51:21,394 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-29 12:51:21,395 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-04-29 12:51:21,395 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-04-29 12:51:21,395 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,395 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,396 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,396 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,396 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,397 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,397 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,397 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-29 12:51:21,397 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-29 12:51:21,398 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-29 12:51:21,398 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-29 12:51:21,398 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-29 12:51:21,399 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,399 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,400 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,400 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,400 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,400 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,401 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,401 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,401 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,401 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,402 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,402 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-29 12:51:21,402 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,402 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,403 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,403 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,403 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,404 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,404 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,404 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,404 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-29 12:51:21,405 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-29 12:51:21,405 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-29 12:51:21,405 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-29 12:51:21,406 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-29 12:51:21,406 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-29 12:51:21,406 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,406 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,407 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,407 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,407 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,408 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,408 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-29 12:51:21,408 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,408 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,409 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-29 12:51:21,409 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-29 12:51:21,409 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-29 12:51:21,410 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-29 12:51:21,410 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-29 12:51:21,411 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,412 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,412 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-04-29 12:51:21,412 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-04-29 12:51:21,413 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,413 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,413 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,413 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,414 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,414 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,414 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,415 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,415 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-29 12:51:21,415 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,415 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,416 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-29 12:51:21,416 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-29 12:51:21,416 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-29 12:51:21,416 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-29 12:51:21,417 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:21,417 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:21,417 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-29 12:51:21,418 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,418 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,418 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,418 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,419 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,419 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-29 12:51:21,419 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,420 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,420 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,420 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,420 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,421 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,421 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,421 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-29 12:51:21,421 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,422 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,422 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,422 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,423 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,423 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,423 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,423 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-29 12:51:21,424 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-29 12:51:21,424 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:21,424 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:21,425 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-29 12:51:21,425 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,425 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,426 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-29 12:51:21,426 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-29 12:51:21,426 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-29 12:51:21,426 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,427 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,427 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,427 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,427 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-29 12:51:21,428 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-29 12:51:21,428 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-29 12:51:21,428 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,428 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,429 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,429 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,429 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,430 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,430 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,430 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,430 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-29 12:51:21,431 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-29 12:51:21,431 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-29 12:51:21,431 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,432 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-29 12:51:21,432 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,432 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,432 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,433 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,433 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,433 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,434 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,434 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,434 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,435 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,435 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,435 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,435 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,436 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,436 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,436 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,437 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,437 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,437 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,438 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,438 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,438 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,439 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,439 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,439 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,439 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,440 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-29 12:51:21,440 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-04-29 12:51:21,440 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-04-29 12:51:21,441 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-29 12:51:21,441 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-29 12:51:21,441 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-29 12:51:21,442 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-29 12:51:21,442 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-04-29 12:51:21,442 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-04-29 12:51:21,443 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,443 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,443 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,443 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,444 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,444 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,444 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,444 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,445 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,445 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,445 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,446 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,446 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,446 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,447 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,447 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,447 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,447 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,448 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-29 12:51:21,448 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,448 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-29 12:51:21,449 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-29 12:51:21,449 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-29 12:51:21,449 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-29 12:51:21,449 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,450 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,450 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,450 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-04-29 12:51:21,451 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-04-29 12:51:21,451 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,451 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline 2024-04-29 12:51:21,451 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline 2024-04-29 12:51:21,452 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,452 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,452 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,452 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,453 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,453 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,454 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,454 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,454 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,455 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,455 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,455 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,455 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,456 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,456 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,456 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,457 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,457 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,457 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,458 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,458 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,458 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-29 12:51:21,458 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,459 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,459 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,459 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,460 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,460 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,461 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,461 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,461 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,462 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-04-29 12:51:21,462 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,462 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,462 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,463 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,463 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,463 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,463 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,464 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,464 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,464 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,465 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,465 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,465 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,465 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,466 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,466 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,466 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,466 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,467 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,467 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,467 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,467 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,468 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,468 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,468 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,468 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,469 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,469 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,469 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,469 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,470 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-29 12:51:21,470 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-04-29 12:51:21,470 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,471 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,471 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,471 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,472 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,473 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,473 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,473 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,473 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-29 12:51:21,474 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-29 12:51:21,474 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-29 12:51:21,474 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-29 12:51:21,475 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-29 12:51:21,475 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,475 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,475 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,476 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,476 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,476 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,477 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,477 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-29 12:51:21,477 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-29 12:51:21,477 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-29 12:51:21,478 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-29 12:51:21,478 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-29 12:51:21,478 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-29 12:51:21,479 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,479 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,479 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,480 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,480 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,480 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,480 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,481 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-29 12:51:21,481 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,481 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,482 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,482 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,482 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,482 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,483 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,483 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,483 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,484 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,484 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,484 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-29 12:51:21,485 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,485 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,485 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,486 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,486 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,486 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-29 12:51:21,487 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,487 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,488 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,488 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,488 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,489 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,489 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-29 12:51:21,489 root INFO running install_egg_info 2024-04-29 12:51:21,493 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.82-py3.12.egg-info 2024-04-29 12:51:21,495 root INFO running install_scripts 2024-04-29 12:51:21,502 wheel INFO creating build/bdist.linux-x86_64/wheel/biopython-1.82.dist-info/WHEEL 2024-04-29 12:51:21,503 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-jt4vrvcz/biopython-1.82-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it 2024-04-29 12:51:21,504 wheel INFO adding 'Bio/File.py' 2024-04-29 12:51:21,504 wheel INFO adding 'Bio/LogisticRegression.py' 2024-04-29 12:51:21,505 wheel INFO adding 'Bio/MarkovModel.py' 2024-04-29 12:51:21,505 wheel INFO adding 'Bio/MaxEntropy.py' 2024-04-29 12:51:21,505 wheel INFO adding 'Bio/NaiveBayes.py' 2024-04-29 12:51:21,506 wheel INFO adding 'Bio/Seq.py' 2024-04-29 12:51:21,507 wheel INFO adding 'Bio/SeqFeature.py' 2024-04-29 12:51:21,508 wheel INFO adding 'Bio/SeqRecord.py' 2024-04-29 12:51:21,509 wheel INFO adding 'Bio/__init__.py' 2024-04-29 12:51:21,509 wheel INFO adding 'Bio/_utils.py' 2024-04-29 12:51:21,510 wheel INFO adding 'Bio/bgzf.py' 2024-04-29 12:51:21,510 wheel INFO adding 'Bio/cpairwise2.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,511 wheel INFO adding 'Bio/cpairwise2module.c' 2024-04-29 12:51:21,511 wheel INFO adding 'Bio/kNN.py' 2024-04-29 12:51:21,512 wheel INFO adding 'Bio/pairwise2.py' 2024-04-29 12:51:21,512 wheel INFO adding 'Bio/py.typed' 2024-04-29 12:51:21,513 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-04-29 12:51:21,514 wheel INFO adding 'Bio/Affy/__init__.py' 2024-04-29 12:51:21,514 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-04-29 12:51:21,515 wheel INFO adding 'Bio/Align/__init__.py' 2024-04-29 12:51:21,516 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-04-29 12:51:21,517 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,519 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-04-29 12:51:21,521 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,524 wheel INFO adding 'Bio/Align/a2m.py' 2024-04-29 12:51:21,524 wheel INFO adding 'Bio/Align/analysis.py' 2024-04-29 12:51:21,525 wheel INFO adding 'Bio/Align/bed.py' 2024-04-29 12:51:21,526 wheel INFO adding 'Bio/Align/bigbed.py' 2024-04-29 12:51:21,526 wheel INFO adding 'Bio/Align/bigmaf.py' 2024-04-29 12:51:21,527 wheel INFO adding 'Bio/Align/bigpsl.py' 2024-04-29 12:51:21,527 wheel INFO adding 'Bio/Align/chain.py' 2024-04-29 12:51:21,528 wheel INFO adding 'Bio/Align/clustal.py' 2024-04-29 12:51:21,528 wheel INFO adding 'Bio/Align/emboss.py' 2024-04-29 12:51:21,529 wheel INFO adding 'Bio/Align/exonerate.py' 2024-04-29 12:51:21,529 wheel INFO adding 'Bio/Align/fasta.py' 2024-04-29 12:51:21,529 wheel INFO adding 'Bio/Align/hhr.py' 2024-04-29 12:51:21,530 wheel INFO adding 'Bio/Align/interfaces.py' 2024-04-29 12:51:21,530 wheel INFO adding 'Bio/Align/maf.py' 2024-04-29 12:51:21,531 wheel INFO adding 'Bio/Align/mauve.py' 2024-04-29 12:51:21,531 wheel INFO adding 'Bio/Align/msf.py' 2024-04-29 12:51:21,531 wheel INFO adding 'Bio/Align/nexus.py' 2024-04-29 12:51:21,532 wheel INFO adding 'Bio/Align/phylip.py' 2024-04-29 12:51:21,532 wheel INFO adding 'Bio/Align/psl.py' 2024-04-29 12:51:21,533 wheel INFO adding 'Bio/Align/sam.py' 2024-04-29 12:51:21,533 wheel INFO adding 'Bio/Align/stockholm.py' 2024-04-29 12:51:21,534 wheel INFO adding 'Bio/Align/tabular.py' 2024-04-29 12:51:21,534 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-04-29 12:51:21,535 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-04-29 12:51:21,535 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-04-29 12:51:21,536 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-04-29 12:51:21,536 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-04-29 12:51:21,537 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-04-29 12:51:21,537 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-04-29 12:51:21,537 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-04-29 12:51:21,538 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-04-29 12:51:21,538 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2024-04-29 12:51:21,539 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2024-04-29 12:51:21,539 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2024-04-29 12:51:21,539 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2024-04-29 12:51:21,540 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2024-04-29 12:51:21,540 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2024-04-29 12:51:21,540 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2024-04-29 12:51:21,541 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2024-04-29 12:51:21,541 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2024-04-29 12:51:21,541 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2024-04-29 12:51:21,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2024-04-29 12:51:21,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2024-04-29 12:51:21,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2024-04-29 12:51:21,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2024-04-29 12:51:21,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2024-04-29 12:51:21,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2024-04-29 12:51:21,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2024-04-29 12:51:21,544 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2024-04-29 12:51:21,544 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2024-04-29 12:51:21,544 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2024-04-29 12:51:21,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2024-04-29 12:51:21,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2024-04-29 12:51:21,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2024-04-29 12:51:21,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2024-04-29 12:51:21,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2024-04-29 12:51:21,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2024-04-29 12:51:21,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2024-04-29 12:51:21,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2024-04-29 12:51:21,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2024-04-29 12:51:21,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2024-04-29 12:51:21,548 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2024-04-29 12:51:21,548 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2024-04-29 12:51:21,549 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2024-04-29 12:51:21,549 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2024-04-29 12:51:21,549 wheel INFO adding 'Bio/AlignIO/FastaIO.py' 2024-04-29 12:51:21,550 wheel INFO adding 'Bio/AlignIO/Interfaces.py' 2024-04-29 12:51:21,550 wheel INFO adding 'Bio/AlignIO/MafIO.py' 2024-04-29 12:51:21,551 wheel INFO adding 'Bio/AlignIO/MauveIO.py' 2024-04-29 12:51:21,551 wheel INFO adding 'Bio/AlignIO/MsfIO.py' 2024-04-29 12:51:21,552 wheel INFO adding 'Bio/AlignIO/NexusIO.py' 2024-04-29 12:51:21,552 wheel INFO adding 'Bio/AlignIO/PhylipIO.py' 2024-04-29 12:51:21,553 wheel INFO adding 'Bio/AlignIO/StockholmIO.py' 2024-04-29 12:51:21,553 wheel INFO adding 'Bio/AlignIO/__init__.py' 2024-04-29 12:51:21,553 wheel INFO adding 'Bio/Alphabet/__init__.py' 2024-04-29 12:51:21,554 wheel INFO adding 'Bio/Application/__init__.py' 2024-04-29 12:51:21,555 wheel INFO adding 'Bio/Blast/Applications.py' 2024-04-29 12:51:21,555 wheel INFO adding 'Bio/Blast/NCBIWWW.py' 2024-04-29 12:51:21,556 wheel INFO adding 'Bio/Blast/NCBIXML.py' 2024-04-29 12:51:21,556 wheel INFO adding 'Bio/Blast/Record.py' 2024-04-29 12:51:21,557 wheel INFO adding 'Bio/Blast/__init__.py' 2024-04-29 12:51:21,557 wheel INFO adding 'Bio/CAPS/__init__.py' 2024-04-29 12:51:21,558 wheel INFO adding 'Bio/Cluster/__init__.py' 2024-04-29 12:51:21,559 wheel INFO adding 'Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,561 wheel INFO adding 'Bio/Cluster/cluster.c' 2024-04-29 12:51:21,562 wheel INFO adding 'Bio/Cluster/cluster.h' 2024-04-29 12:51:21,563 wheel INFO adding 'Bio/Cluster/clustermodule.c' 2024-04-29 12:51:21,564 wheel INFO adding 'Bio/Compass/__init__.py' 2024-04-29 12:51:21,564 wheel INFO adding 'Bio/Data/CodonTable.py' 2024-04-29 12:51:21,565 wheel INFO adding 'Bio/Data/IUPACData.py' 2024-04-29 12:51:21,565 wheel INFO adding 'Bio/Data/PDBData.py' 2024-04-29 12:51:21,566 wheel INFO adding 'Bio/Data/__init__.py' 2024-04-29 12:51:21,567 wheel INFO adding 'Bio/Emboss/Applications.py' 2024-04-29 12:51:21,567 wheel INFO adding 'Bio/Emboss/Primer3.py' 2024-04-29 12:51:21,568 wheel INFO adding 'Bio/Emboss/PrimerSearch.py' 2024-04-29 12:51:21,568 wheel INFO adding 'Bio/Emboss/__init__.py' 2024-04-29 12:51:21,568 wheel INFO adding 'Bio/Entrez/Parser.py' 2024-04-29 12:51:21,569 wheel INFO adding 'Bio/Entrez/__init__.py' 2024-04-29 12:51:21,570 wheel INFO adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' 2024-04-29 12:51:21,571 wheel INFO adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' 2024-04-29 12:51:21,571 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' 2024-04-29 12:51:21,572 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' 2024-04-29 12:51:21,572 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' 2024-04-29 12:51:21,572 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' 2024-04-29 12:51:21,573 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' 2024-04-29 12:51:21,573 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' 2024-04-29 12:51:21,574 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' 2024-04-29 12:51:21,574 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' 2024-04-29 12:51:21,575 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' 2024-04-29 12:51:21,575 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' 2024-04-29 12:51:21,576 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.dtd' 2024-04-29 12:51:21,576 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' 2024-04-29 12:51:21,576 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.dtd' 2024-04-29 12:51:21,577 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd' 2024-04-29 12:51:21,577 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.dtd' 2024-04-29 12:51:21,577 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd' 2024-04-29 12:51:21,578 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd' 2024-04-29 12:51:21,578 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd' 2024-04-29 12:51:21,579 wheel INFO adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent' 2024-04-29 12:51:21,579 wheel INFO adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent' 2024-04-29 12:51:21,580 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd' 2024-04-29 12:51:21,580 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent' 2024-04-29 12:51:21,581 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent' 2024-04-29 12:51:21,582 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent' 2024-04-29 12:51:21,582 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent' 2024-04-29 12:51:21,583 wheel INFO adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent' 2024-04-29 12:51:21,584 wheel INFO adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent' 2024-04-29 12:51:21,585 wheel INFO adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent' 2024-04-29 12:51:21,586 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent' 2024-04-29 12:51:21,587 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common1-3.ent' 2024-04-29 12:51:21,589 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent' 2024-04-29 12:51:21,589 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent' 2024-04-29 12:51:21,590 wheel INFO adding 'Bio/Entrez/DTDs/JATS-display1-3.ent' 2024-04-29 12:51:21,591 wheel INFO adding 'Bio/Entrez/DTDs/JATS-format1-3.ent' 2024-04-29 12:51:21,592 wheel INFO adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent' 2024-04-29 12:51:21,592 wheel INFO adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent' 2024-04-29 12:51:21,593 wheel INFO adding 'Bio/Entrez/DTDs/JATS-link1-3.ent' 2024-04-29 12:51:21,594 wheel INFO adding 'Bio/Entrez/DTDs/JATS-list1-3.ent' 2024-04-29 12:51:21,594 wheel INFO adding 'Bio/Entrez/DTDs/JATS-math1-3.ent' 2024-04-29 12:51:21,595 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent' 2024-04-29 12:51:21,595 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent' 2024-04-29 12:51:21,596 wheel INFO adding 'Bio/Entrez/DTDs/JATS-modules1-3.ent' 2024-04-29 12:51:21,596 wheel INFO adding 'Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent' 2024-04-29 12:51:21,597 wheel INFO adding 'Bio/Entrez/DTDs/JATS-notat1-3.ent' 2024-04-29 12:51:21,597 wheel INFO adding 'Bio/Entrez/DTDs/JATS-para1-3.ent' 2024-04-29 12:51:21,598 wheel INFO adding 'Bio/Entrez/DTDs/JATS-phrase1-3.ent' 2024-04-29 12:51:21,599 wheel INFO adding 'Bio/Entrez/DTDs/JATS-references1-3.ent' 2024-04-29 12:51:21,599 wheel INFO adding 'Bio/Entrez/DTDs/JATS-related-object1-3.ent' 2024-04-29 12:51:21,600 wheel INFO adding 'Bio/Entrez/DTDs/JATS-section1-3.ent' 2024-04-29 12:51:21,600 wheel INFO adding 'Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent' 2024-04-29 12:51:21,601 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.dtd' 2024-04-29 12:51:21,601 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.mod.dtd' 2024-04-29 12:51:21,602 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd' 2024-04-29 12:51:21,602 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd' 2024-04-29 12:51:21,602 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.dtd' 2024-04-29 12:51:21,603 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.mod.dtd' 2024-04-29 12:51:21,603 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.dtd' 2024-04-29 12:51:21,604 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd' 2024-04-29 12:51:21,604 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.dtd' 2024-04-29 12:51:21,605 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.mod.dtd' 2024-04-29 12:51:21,605 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.dtd' 2024-04-29 12:51:21,605 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd' 2024-04-29 12:51:21,606 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.dtd' 2024-04-29 12:51:21,606 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd' 2024-04-29 12:51:21,606 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.dtd' 2024-04-29 12:51:21,607 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd' 2024-04-29 12:51:21,607 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.dtd' 2024-04-29 12:51:21,607 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd' 2024-04-29 12:51:21,608 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.dtd' 2024-04-29 12:51:21,608 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd' 2024-04-29 12:51:21,609 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.dtd' 2024-04-29 12:51:21,609 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd' 2024-04-29 12:51:21,609 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.dtd' 2024-04-29 12:51:21,610 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd' 2024-04-29 12:51:21,610 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.dtd' 2024-04-29 12:51:21,610 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd' 2024-04-29 12:51:21,611 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entity.mod.dtd' 2024-04-29 12:51:21,611 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.dtd' 2024-04-29 12:51:21,612 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd' 2024-04-29 12:51:21,612 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.dtd' 2024-04-29 12:51:21,612 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd' 2024-04-29 12:51:21,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.dtd' 2024-04-29 12:51:21,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd' 2024-04-29 12:51:21,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.dtd' 2024-04-29 12:51:21,614 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd' 2024-04-29 12:51:21,614 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.dtd' 2024-04-29 12:51:21,614 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.mod.dtd' 2024-04-29 12:51:21,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.dtd' 2024-04-29 12:51:21,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.mod.dtd' 2024-04-29 12:51:21,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.dtd' 2024-04-29 12:51:21,616 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd' 2024-04-29 12:51:21,616 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.dtd' 2024-04-29 12:51:21,616 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd' 2024-04-29 12:51:21,617 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.dtd' 2024-04-29 12:51:21,617 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd' 2024-04-29 12:51:21,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.dtd' 2024-04-29 12:51:21,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd' 2024-04-29 12:51:21,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.dtd' 2024-04-29 12:51:21,619 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.mod.dtd' 2024-04-29 12:51:21,619 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.dtd' 2024-04-29 12:51:21,619 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.mod.dtd' 2024-04-29 12:51:21,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.dtd' 2024-04-29 12:51:21,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.mod.dtd' 2024-04-29 12:51:21,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.dtd' 2024-04-29 12:51:21,621 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd' 2024-04-29 12:51:21,621 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.dtd' 2024-04-29 12:51:21,621 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.mod.dtd' 2024-04-29 12:51:21,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.dtd' 2024-04-29 12:51:21,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd' 2024-04-29 12:51:21,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.dtd' 2024-04-29 12:51:21,623 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd' 2024-04-29 12:51:21,623 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.dtd' 2024-04-29 12:51:21,624 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.mod.dtd' 2024-04-29 12:51:21,624 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.dtd' 2024-04-29 12:51:21,624 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.mod.dtd' 2024-04-29 12:51:21,625 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.dtd' 2024-04-29 12:51:21,625 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.mod.dtd' 2024-04-29 12:51:21,625 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.dtd' 2024-04-29 12:51:21,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd' 2024-04-29 12:51:21,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.dtd' 2024-04-29 12:51:21,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.mod.dtd' 2024-04-29 12:51:21,627 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.dtd' 2024-04-29 12:51:21,627 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.mod.dtd' 2024-04-29 12:51:21,627 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.dtd' 2024-04-29 12:51:21,628 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd' 2024-04-29 12:51:21,628 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.dtd' 2024-04-29 12:51:21,628 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd' 2024-04-29 12:51:21,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.dtd' 2024-04-29 12:51:21,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd' 2024-04-29 12:51:21,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.dtd' 2024-04-29 12:51:21,630 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd' 2024-04-29 12:51:21,630 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.dtd' 2024-04-29 12:51:21,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd' 2024-04-29 12:51:21,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.dtd' 2024-04-29 12:51:21,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd' 2024-04-29 12:51:21,632 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.dtd' 2024-04-29 12:51:21,632 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd' 2024-04-29 12:51:21,633 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.dtd' 2024-04-29 12:51:21,633 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd' 2024-04-29 12:51:21,633 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.dtd' 2024-04-29 12:51:21,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd' 2024-04-29 12:51:21,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.dtd' 2024-04-29 12:51:21,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd' 2024-04-29 12:51:21,635 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.dtd' 2024-04-29 12:51:21,635 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd' 2024-04-29 12:51:21,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.dtd' 2024-04-29 12:51:21,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.mod.dtd' 2024-04-29 12:51:21,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Systems.dtd' 2024-04-29 12:51:21,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.dtd' 2024-04-29 12:51:21,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd' 2024-04-29 12:51:21,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.dtd' 2024-04-29 12:51:21,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd' 2024-04-29 12:51:21,638 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.dtd' 2024-04-29 12:51:21,638 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.mod.dtd' 2024-04-29 12:51:21,639 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_all.dtd' 2024-04-29 12:51:21,639 wheel INFO adding 'Bio/Entrez/DTDs/NSE.dtd' 2024-04-29 12:51:21,639 wheel INFO adding 'Bio/Entrez/DTDs/NSE.mod.dtd' 2024-04-29 12:51:21,640 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.dtd' 2024-04-29 12:51:21,640 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.mod.dtd' 2024-04-29 12:51:21,641 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.dtd' 2024-04-29 12:51:21,641 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.mod.dtd' 2024-04-29 12:51:21,641 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.dtd' 2024-04-29 12:51:21,642 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.mod.dtd' 2024-04-29 12:51:21,642 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.dtd' 2024-04-29 12:51:21,642 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.mod.dtd' 2024-04-29 12:51:21,643 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.dtd' 2024-04-29 12:51:21,643 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.mod.dtd' 2024-04-29 12:51:21,643 wheel INFO adding 'Bio/Entrez/DTDs/XHTMLtablesetup.ent' 2024-04-29 12:51:21,644 wheel INFO adding 'Bio/Entrez/DTDs/archivearticle.dtd' 2024-04-29 12:51:21,645 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-classes.ent' 2024-04-29 12:51:21,645 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-mixes.ent' 2024-04-29 12:51:21,645 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-models.ent' 2024-04-29 12:51:21,646 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-modules.ent' 2024-04-29 12:51:21,647 wheel INFO adding 'Bio/Entrez/DTDs/articlemeta.ent' 2024-04-29 12:51:21,648 wheel INFO adding 'Bio/Entrez/DTDs/backmatter.ent' 2024-04-29 12:51:21,648 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_100301.dtd' 2024-04-29 12:51:21,648 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_110101.dtd' 2024-04-29 12:51:21,649 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_120101.dtd' 2024-04-29 12:51:21,649 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_130101.dtd' 2024-04-29 12:51:21,649 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_140101.dtd' 2024-04-29 12:51:21,649 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_150101.dtd' 2024-04-29 12:51:21,650 wheel INFO adding 'Bio/Entrez/DTDs/chars.ent' 2024-04-29 12:51:21,651 wheel INFO adding 'Bio/Entrez/DTDs/common.ent' 2024-04-29 12:51:21,652 wheel INFO adding 'Bio/Entrez/DTDs/default-classes.ent' 2024-04-29 12:51:21,653 wheel INFO adding 'Bio/Entrez/DTDs/default-mixes.ent' 2024-04-29 12:51:21,653 wheel INFO adding 'Bio/Entrez/DTDs/display.ent' 2024-04-29 12:51:21,654 wheel INFO adding 'Bio/Entrez/DTDs/eInfo_020511.dtd' 2024-04-29 12:51:21,654 wheel INFO adding 'Bio/Entrez/DTDs/eLink_090910.dtd' 2024-04-29 12:51:21,655 wheel INFO adding 'Bio/Entrez/DTDs/eLink_101123.dtd' 2024-04-29 12:51:21,655 wheel INFO adding 'Bio/Entrez/DTDs/ePost_020511.dtd' 2024-04-29 12:51:21,655 wheel INFO adding 'Bio/Entrez/DTDs/eSearch_020511.dtd' 2024-04-29 12:51:21,656 wheel INFO adding 'Bio/Entrez/DTDs/eSpell.dtd' 2024-04-29 12:51:21,656 wheel INFO adding 'Bio/Entrez/DTDs/eSummary_041029.dtd' 2024-04-29 12:51:21,656 wheel INFO adding 'Bio/Entrez/DTDs/egquery.dtd' 2024-04-29 12:51:21,656 wheel INFO adding 'Bio/Entrez/DTDs/einfo.dtd' 2024-04-29 12:51:21,657 wheel INFO adding 'Bio/Entrez/DTDs/elink.dtd' 2024-04-29 12:51:21,657 wheel INFO adding 'Bio/Entrez/DTDs/elink_020122.dtd' 2024-04-29 12:51:21,657 wheel INFO adding 'Bio/Entrez/DTDs/epost.dtd' 2024-04-29 12:51:21,658 wheel INFO adding 'Bio/Entrez/DTDs/esearch.dtd' 2024-04-29 12:51:21,658 wheel INFO adding 'Bio/Entrez/DTDs/esummary-v1.dtd' 2024-04-29 12:51:21,658 wheel INFO adding 'Bio/Entrez/DTDs/esummary_gene.dtd' 2024-04-29 12:51:21,659 wheel INFO adding 'Bio/Entrez/DTDs/format.ent' 2024-04-29 12:51:21,659 wheel INFO adding 'Bio/Entrez/DTDs/htmltable.dtd' 2024-04-29 12:51:21,660 wheel INFO adding 'Bio/Entrez/DTDs/isoamsa.ent' 2024-04-29 12:51:21,660 wheel INFO adding 'Bio/Entrez/DTDs/isoamsb.ent' 2024-04-29 12:51:21,660 wheel INFO adding 'Bio/Entrez/DTDs/isoamsc.ent' 2024-04-29 12:51:21,661 wheel INFO adding 'Bio/Entrez/DTDs/isoamsn.ent' 2024-04-29 12:51:21,661 wheel INFO adding 'Bio/Entrez/DTDs/isoamso.ent' 2024-04-29 12:51:21,661 wheel INFO adding 'Bio/Entrez/DTDs/isoamsr.ent' 2024-04-29 12:51:21,662 wheel INFO adding 'Bio/Entrez/DTDs/isobox.ent' 2024-04-29 12:51:21,662 wheel INFO adding 'Bio/Entrez/DTDs/isocyr1.ent' 2024-04-29 12:51:21,662 wheel INFO adding 'Bio/Entrez/DTDs/isocyr2.ent' 2024-04-29 12:51:21,663 wheel INFO adding 'Bio/Entrez/DTDs/isodia.ent' 2024-04-29 12:51:21,663 wheel INFO adding 'Bio/Entrez/DTDs/isogrk1.ent' 2024-04-29 12:51:21,663 wheel INFO adding 'Bio/Entrez/DTDs/isogrk2.ent' 2024-04-29 12:51:21,664 wheel INFO adding 'Bio/Entrez/DTDs/isogrk3.ent' 2024-04-29 12:51:21,664 wheel INFO adding 'Bio/Entrez/DTDs/isogrk4.ent' 2024-04-29 12:51:21,664 wheel INFO adding 'Bio/Entrez/DTDs/isolat1.ent' 2024-04-29 12:51:21,665 wheel INFO adding 'Bio/Entrez/DTDs/isolat2.ent' 2024-04-29 12:51:21,665 wheel INFO adding 'Bio/Entrez/DTDs/isomfrk.ent' 2024-04-29 12:51:21,665 wheel INFO adding 'Bio/Entrez/DTDs/isomopf.ent' 2024-04-29 12:51:21,666 wheel INFO adding 'Bio/Entrez/DTDs/isomscr.ent' 2024-04-29 12:51:21,666 wheel INFO adding 'Bio/Entrez/DTDs/isonum.ent' 2024-04-29 12:51:21,666 wheel INFO adding 'Bio/Entrez/DTDs/isopub.ent' 2024-04-29 12:51:21,667 wheel INFO adding 'Bio/Entrez/DTDs/isotech.ent' 2024-04-29 12:51:21,667 wheel INFO adding 'Bio/Entrez/DTDs/journalmeta.ent' 2024-04-29 12:51:21,668 wheel INFO adding 'Bio/Entrez/DTDs/link.ent' 2024-04-29 12:51:21,668 wheel INFO adding 'Bio/Entrez/DTDs/list.ent' 2024-04-29 12:51:21,669 wheel INFO adding 'Bio/Entrez/DTDs/math.ent' 2024-04-29 12:51:21,669 wheel INFO adding 'Bio/Entrez/DTDs/mathml-in-pubmed.mod' 2024-04-29 12:51:21,670 wheel INFO adding 'Bio/Entrez/DTDs/mathml2-qname-1.mod' 2024-04-29 12:51:21,670 wheel INFO adding 'Bio/Entrez/DTDs/mathml2.dtd' 2024-04-29 12:51:21,671 wheel INFO adding 'Bio/Entrez/DTDs/mathml3-qname1.mod' 2024-04-29 12:51:21,671 wheel INFO adding 'Bio/Entrez/DTDs/mathml3.dtd' 2024-04-29 12:51:21,672 wheel INFO adding 'Bio/Entrez/DTDs/mathmlsetup.ent' 2024-04-29 12:51:21,672 wheel INFO adding 'Bio/Entrez/DTDs/mmlalias.ent' 2024-04-29 12:51:21,673 wheel INFO adding 'Bio/Entrez/DTDs/mmlextra.ent' 2024-04-29 12:51:21,673 wheel INFO adding 'Bio/Entrez/DTDs/modules.ent' 2024-04-29 12:51:21,674 wheel INFO adding 'Bio/Entrez/DTDs/nlm-articleset-2.0.dtd' 2024-04-29 12:51:21,674 wheel INFO adding 'Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd' 2024-04-29 12:51:21,675 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_011101.dtd' 2024-04-29 12:51:21,675 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_080101.dtd' 2024-04-29 12:51:21,675 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_090101.dtd' 2024-04-29 12:51:21,676 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_011101.dtd' 2024-04-29 12:51:21,676 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_080101.dtd' 2024-04-29 12:51:21,676 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_090101.dtd' 2024-04-29 12:51:21,677 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd' 2024-04-29 12:51:21,677 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd' 2024-04-29 12:51:21,677 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd' 2024-04-29 12:51:21,678 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd' 2024-04-29 12:51:21,678 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd' 2024-04-29 12:51:21,679 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd' 2024-04-29 12:51:21,679 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd' 2024-04-29 12:51:21,679 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd' 2024-04-29 12:51:21,680 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd' 2024-04-29 12:51:21,680 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd' 2024-04-29 12:51:21,680 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd' 2024-04-29 12:51:21,681 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_080101.dtd' 2024-04-29 12:51:21,681 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_100101.dtd' 2024-04-29 12:51:21,681 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd' 2024-04-29 12:51:21,682 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd' 2024-04-29 12:51:21,682 wheel INFO adding 'Bio/Entrez/DTDs/notat.ent' 2024-04-29 12:51:21,683 wheel INFO adding 'Bio/Entrez/DTDs/para.ent' 2024-04-29 12:51:21,683 wheel INFO adding 'Bio/Entrez/DTDs/phrase.ent' 2024-04-29 12:51:21,684 wheel INFO adding 'Bio/Entrez/DTDs/pmc-1.dtd' 2024-04-29 12:51:21,684 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_020114.dtd' 2024-04-29 12:51:21,684 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_080101.dtd' 2024-04-29 12:51:21,685 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_090101.dtd' 2024-04-29 12:51:21,685 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100101.dtd' 2024-04-29 12:51:21,685 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100301.dtd' 2024-04-29 12:51:21,686 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_110101.dtd' 2024-04-29 12:51:21,686 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_120101.dtd' 2024-04-29 12:51:21,686 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130101.dtd' 2024-04-29 12:51:21,687 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130501.dtd' 2024-04-29 12:51:21,687 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_140101.dtd' 2024-04-29 12:51:21,687 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_150101.dtd' 2024-04-29 12:51:21,688 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180101.dtd' 2024-04-29 12:51:21,688 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180601.dtd' 2024-04-29 12:51:21,689 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_190101.dtd' 2024-04-29 12:51:21,689 wheel INFO adding 'Bio/Entrez/DTDs/references.ent' 2024-04-29 12:51:21,690 wheel INFO adding 'Bio/Entrez/DTDs/section.ent' 2024-04-29 12:51:21,690 wheel INFO adding 'Bio/Entrez/DTDs/taxon.dtd' 2024-04-29 12:51:21,690 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-inlstyle-1.mod' 2024-04-29 12:51:21,691 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-table-1.mod' 2024-04-29 12:51:21,691 wheel INFO adding 'Bio/Entrez/DTDs/xmlspecchars.ent' 2024-04-29 12:51:21,692 wheel INFO adding 'Bio/Entrez/XSDs/IPGReportSet.xsd' 2024-04-29 12:51:21,692 wheel INFO adding 'Bio/ExPASy/Enzyme.py' 2024-04-29 12:51:21,693 wheel INFO adding 'Bio/ExPASy/Prodoc.py' 2024-04-29 12:51:21,693 wheel INFO adding 'Bio/ExPASy/Prosite.py' 2024-04-29 12:51:21,693 wheel INFO adding 'Bio/ExPASy/ScanProsite.py' 2024-04-29 12:51:21,694 wheel INFO adding 'Bio/ExPASy/__init__.py' 2024-04-29 12:51:21,694 wheel INFO adding 'Bio/ExPASy/cellosaurus.py' 2024-04-29 12:51:21,694 wheel INFO adding 'Bio/GenBank/Record.py' 2024-04-29 12:51:21,695 wheel INFO adding 'Bio/GenBank/Scanner.py' 2024-04-29 12:51:21,696 wheel INFO adding 'Bio/GenBank/__init__.py' 2024-04-29 12:51:21,697 wheel INFO adding 'Bio/GenBank/utils.py' 2024-04-29 12:51:21,697 wheel INFO adding 'Bio/Geo/Record.py' 2024-04-29 12:51:21,697 wheel INFO adding 'Bio/Geo/__init__.py' 2024-04-29 12:51:21,698 wheel INFO adding 'Bio/Graphics/BasicChromosome.py' 2024-04-29 12:51:21,698 wheel INFO adding 'Bio/Graphics/ColorSpiral.py' 2024-04-29 12:51:21,699 wheel INFO adding 'Bio/Graphics/Comparative.py' 2024-04-29 12:51:21,699 wheel INFO adding 'Bio/Graphics/DisplayRepresentation.py' 2024-04-29 12:51:21,699 wheel INFO adding 'Bio/Graphics/Distribution.py' 2024-04-29 12:51:21,700 wheel INFO adding 'Bio/Graphics/KGML_vis.py' 2024-04-29 12:51:21,700 wheel INFO adding 'Bio/Graphics/__init__.py' 2024-04-29 12:51:21,701 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_AbstractDrawer.py' 2024-04-29 12:51:21,701 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CircularDrawer.py' 2024-04-29 12:51:21,702 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Colors.py' 2024-04-29 12:51:21,702 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CrossLink.py' 2024-04-29 12:51:21,703 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Diagram.py' 2024-04-29 12:51:21,703 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Feature.py' 2024-04-29 12:51:21,703 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_FeatureSet.py' 2024-04-29 12:51:21,704 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Graph.py' 2024-04-29 12:51:21,704 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_GraphSet.py' 2024-04-29 12:51:21,705 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_LinearDrawer.py' 2024-04-29 12:51:21,705 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Track.py' 2024-04-29 12:51:21,706 wheel INFO adding 'Bio/Graphics/GenomeDiagram/__init__.py' 2024-04-29 12:51:21,706 wheel INFO adding 'Bio/HMM/DynamicProgramming.py' 2024-04-29 12:51:21,707 wheel INFO adding 'Bio/HMM/MarkovModel.py' 2024-04-29 12:51:21,707 wheel INFO adding 'Bio/HMM/Trainer.py' 2024-04-29 12:51:21,707 wheel INFO adding 'Bio/HMM/Utilities.py' 2024-04-29 12:51:21,708 wheel INFO adding 'Bio/HMM/__init__.py' 2024-04-29 12:51:21,708 wheel INFO adding 'Bio/KEGG/REST.py' 2024-04-29 12:51:21,709 wheel INFO adding 'Bio/KEGG/__init__.py' 2024-04-29 12:51:21,709 wheel INFO adding 'Bio/KEGG/Compound/__init__.py' 2024-04-29 12:51:21,709 wheel INFO adding 'Bio/KEGG/Enzyme/__init__.py' 2024-04-29 12:51:21,710 wheel INFO adding 'Bio/KEGG/Gene/__init__.py' 2024-04-29 12:51:21,710 wheel INFO adding 'Bio/KEGG/KGML/KGML_parser.py' 2024-04-29 12:51:21,711 wheel INFO adding 'Bio/KEGG/KGML/KGML_pathway.py' 2024-04-29 12:51:21,711 wheel INFO adding 'Bio/KEGG/KGML/__init__.py' 2024-04-29 12:51:21,711 wheel INFO adding 'Bio/KEGG/Map/__init__.py' 2024-04-29 12:51:21,712 wheel INFO adding 'Bio/Medline/__init__.py' 2024-04-29 12:51:21,712 wheel INFO adding 'Bio/NMR/NOEtools.py' 2024-04-29 12:51:21,712 wheel INFO adding 'Bio/NMR/__init__.py' 2024-04-29 12:51:21,713 wheel INFO adding 'Bio/NMR/xpktools.py' 2024-04-29 12:51:21,713 wheel INFO adding 'Bio/Nexus/Nexus.py' 2024-04-29 12:51:21,714 wheel INFO adding 'Bio/Nexus/Nodes.py' 2024-04-29 12:51:21,715 wheel INFO adding 'Bio/Nexus/StandardData.py' 2024-04-29 12:51:21,715 wheel INFO adding 'Bio/Nexus/Trees.py' 2024-04-29 12:51:21,716 wheel INFO adding 'Bio/Nexus/__init__.py' 2024-04-29 12:51:21,716 wheel INFO adding 'Bio/Nexus/cnexus.c' 2024-04-29 12:51:21,716 wheel INFO adding 'Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,717 wheel INFO adding 'Bio/PDB/AbstractPropertyMap.py' 2024-04-29 12:51:21,717 wheel INFO adding 'Bio/PDB/Atom.py' 2024-04-29 12:51:21,718 wheel INFO adding 'Bio/PDB/Chain.py' 2024-04-29 12:51:21,718 wheel INFO adding 'Bio/PDB/DSSP.py' 2024-04-29 12:51:21,719 wheel INFO adding 'Bio/PDB/Dice.py' 2024-04-29 12:51:21,719 wheel INFO adding 'Bio/PDB/Entity.py' 2024-04-29 12:51:21,719 wheel INFO adding 'Bio/PDB/FragmentMapper.py' 2024-04-29 12:51:21,720 wheel INFO adding 'Bio/PDB/HSExposure.py' 2024-04-29 12:51:21,720 wheel INFO adding 'Bio/PDB/MMCIF2Dict.py' 2024-04-29 12:51:21,720 wheel INFO adding 'Bio/PDB/MMCIFParser.py' 2024-04-29 12:51:21,721 wheel INFO adding 'Bio/PDB/Model.py' 2024-04-29 12:51:21,721 wheel INFO adding 'Bio/PDB/NACCESS.py' 2024-04-29 12:51:21,722 wheel INFO adding 'Bio/PDB/NeighborSearch.py' 2024-04-29 12:51:21,722 wheel INFO adding 'Bio/PDB/PDBExceptions.py' 2024-04-29 12:51:21,722 wheel INFO adding 'Bio/PDB/PDBIO.py' 2024-04-29 12:51:21,723 wheel INFO adding 'Bio/PDB/PDBList.py' 2024-04-29 12:51:21,723 wheel INFO adding 'Bio/PDB/PDBParser.py' 2024-04-29 12:51:21,724 wheel INFO adding 'Bio/PDB/PICIO.py' 2024-04-29 12:51:21,724 wheel INFO adding 'Bio/PDB/PSEA.py' 2024-04-29 12:51:21,725 wheel INFO adding 'Bio/PDB/Polypeptide.py' 2024-04-29 12:51:21,725 wheel INFO adding 'Bio/PDB/Residue.py' 2024-04-29 12:51:21,726 wheel INFO adding 'Bio/PDB/ResidueDepth.py' 2024-04-29 12:51:21,726 wheel INFO adding 'Bio/PDB/SASA.py' 2024-04-29 12:51:21,726 wheel INFO adding 'Bio/PDB/SCADIO.py' 2024-04-29 12:51:21,727 wheel INFO adding 'Bio/PDB/Selection.py' 2024-04-29 12:51:21,727 wheel INFO adding 'Bio/PDB/Structure.py' 2024-04-29 12:51:21,728 wheel INFO adding 'Bio/PDB/StructureAlignment.py' 2024-04-29 12:51:21,728 wheel INFO adding 'Bio/PDB/StructureBuilder.py' 2024-04-29 12:51:21,728 wheel INFO adding 'Bio/PDB/Superimposer.py' 2024-04-29 12:51:21,729 wheel INFO adding 'Bio/PDB/__init__.py' 2024-04-29 12:51:21,729 wheel INFO adding 'Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,730 wheel INFO adding 'Bio/PDB/ccealignmodule.c' 2024-04-29 12:51:21,730 wheel INFO adding 'Bio/PDB/cealign.py' 2024-04-29 12:51:21,731 wheel INFO adding 'Bio/PDB/ic_data.py' 2024-04-29 12:51:21,731 wheel INFO adding 'Bio/PDB/ic_rebuild.py' 2024-04-29 12:51:21,732 wheel INFO adding 'Bio/PDB/internal_coords.py' 2024-04-29 12:51:21,734 wheel INFO adding 'Bio/PDB/kdtrees.c' 2024-04-29 12:51:21,735 wheel INFO adding 'Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,735 wheel INFO adding 'Bio/PDB/mmcifio.py' 2024-04-29 12:51:21,736 wheel INFO adding 'Bio/PDB/parse_pdb_header.py' 2024-04-29 12:51:21,736 wheel INFO adding 'Bio/PDB/qcprot.py' 2024-04-29 12:51:21,737 wheel INFO adding 'Bio/PDB/vectors.py' 2024-04-29 12:51:21,737 wheel INFO adding 'Bio/PDB/mmtf/DefaultParser.py' 2024-04-29 12:51:21,737 wheel INFO adding 'Bio/PDB/mmtf/__init__.py' 2024-04-29 12:51:21,738 wheel INFO adding 'Bio/PDB/mmtf/mmtfio.py' 2024-04-29 12:51:21,738 wheel INFO adding 'Bio/Pathway/__init__.py' 2024-04-29 12:51:21,739 wheel INFO adding 'Bio/Pathway/Rep/Graph.py' 2024-04-29 12:51:21,739 wheel INFO adding 'Bio/Pathway/Rep/MultiGraph.py' 2024-04-29 12:51:21,739 wheel INFO adding 'Bio/Pathway/Rep/__init__.py' 2024-04-29 12:51:21,740 wheel INFO adding 'Bio/Phylo/BaseTree.py' 2024-04-29 12:51:21,740 wheel INFO adding 'Bio/Phylo/CDAO.py' 2024-04-29 12:51:21,741 wheel INFO adding 'Bio/Phylo/CDAOIO.py' 2024-04-29 12:51:21,741 wheel INFO adding 'Bio/Phylo/Consensus.py' 2024-04-29 12:51:21,742 wheel INFO adding 'Bio/Phylo/NeXML.py' 2024-04-29 12:51:21,742 wheel INFO adding 'Bio/Phylo/NeXMLIO.py' 2024-04-29 12:51:21,742 wheel INFO adding 'Bio/Phylo/Newick.py' 2024-04-29 12:51:21,743 wheel INFO adding 'Bio/Phylo/NewickIO.py' 2024-04-29 12:51:21,743 wheel INFO adding 'Bio/Phylo/NexusIO.py' 2024-04-29 12:51:21,744 wheel INFO adding 'Bio/Phylo/PhyloXML.py' 2024-04-29 12:51:21,744 wheel INFO adding 'Bio/Phylo/PhyloXMLIO.py' 2024-04-29 12:51:21,745 wheel INFO adding 'Bio/Phylo/TreeConstruction.py' 2024-04-29 12:51:21,746 wheel INFO adding 'Bio/Phylo/__init__.py' 2024-04-29 12:51:21,746 wheel INFO adding 'Bio/Phylo/_cdao_owl.py' 2024-04-29 12:51:21,747 wheel INFO adding 'Bio/Phylo/_io.py' 2024-04-29 12:51:21,747 wheel INFO adding 'Bio/Phylo/_utils.py' 2024-04-29 12:51:21,748 wheel INFO adding 'Bio/Phylo/Applications/_Fasttree.py' 2024-04-29 12:51:21,748 wheel INFO adding 'Bio/Phylo/Applications/_Phyml.py' 2024-04-29 12:51:21,749 wheel INFO adding 'Bio/Phylo/Applications/_Raxml.py' 2024-04-29 12:51:21,749 wheel INFO adding 'Bio/Phylo/Applications/__init__.py' 2024-04-29 12:51:21,750 wheel INFO adding 'Bio/Phylo/PAML/__init__.py' 2024-04-29 12:51:21,750 wheel INFO adding 'Bio/Phylo/PAML/_paml.py' 2024-04-29 12:51:21,750 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py' 2024-04-29 12:51:21,751 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py' 2024-04-29 12:51:21,751 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py' 2024-04-29 12:51:21,752 wheel INFO adding 'Bio/Phylo/PAML/baseml.py' 2024-04-29 12:51:21,752 wheel INFO adding 'Bio/Phylo/PAML/chi2.py' 2024-04-29 12:51:21,752 wheel INFO adding 'Bio/Phylo/PAML/codeml.py' 2024-04-29 12:51:21,753 wheel INFO adding 'Bio/Phylo/PAML/yn00.py' 2024-04-29 12:51:21,753 wheel INFO adding 'Bio/PopGen/__init__.py' 2024-04-29 12:51:21,754 wheel INFO adding 'Bio/PopGen/GenePop/Controller.py' 2024-04-29 12:51:21,754 wheel INFO adding 'Bio/PopGen/GenePop/EasyController.py' 2024-04-29 12:51:21,754 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py' 2024-04-29 12:51:21,755 wheel INFO adding 'Bio/PopGen/GenePop/LargeFileParser.py' 2024-04-29 12:51:21,755 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py' 2024-04-29 12:51:21,756 wheel INFO adding 'Bio/Restriction/PrintFormat.py' 2024-04-29 12:51:21,756 wheel INFO adding 'Bio/Restriction/Restriction.py' 2024-04-29 12:51:21,759 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py' 2024-04-29 12:51:21,762 wheel INFO adding 'Bio/Restriction/__init__.py' 2024-04-29 12:51:21,762 wheel INFO adding 'Bio/SCOP/Cla.py' 2024-04-29 12:51:21,763 wheel INFO adding 'Bio/SCOP/Des.py' 2024-04-29 12:51:21,763 wheel INFO adding 'Bio/SCOP/Dom.py' 2024-04-29 12:51:21,763 wheel INFO adding 'Bio/SCOP/Hie.py' 2024-04-29 12:51:21,764 wheel INFO adding 'Bio/SCOP/Raf.py' 2024-04-29 12:51:21,764 wheel INFO adding 'Bio/SCOP/Residues.py' 2024-04-29 12:51:21,765 wheel INFO adding 'Bio/SCOP/__init__.py' 2024-04-29 12:51:21,765 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py' 2024-04-29 12:51:21,766 wheel INFO adding 'Bio/SearchIO/BlatIO.py' 2024-04-29 12:51:21,766 wheel INFO adding 'Bio/SearchIO/FastaIO.py' 2024-04-29 12:51:21,767 wheel INFO adding 'Bio/SearchIO/__init__.py' 2024-04-29 12:51:21,767 wheel INFO adding 'Bio/SearchIO/_index.py' 2024-04-29 12:51:21,768 wheel INFO adding 'Bio/SearchIO/_utils.py' 2024-04-29 12:51:21,768 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py' 2024-04-29 12:51:21,769 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py' 2024-04-29 12:51:21,769 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py' 2024-04-29 12:51:21,770 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py' 2024-04-29 12:51:21,770 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py' 2024-04-29 12:51:21,771 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py' 2024-04-29 12:51:21,771 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py' 2024-04-29 12:51:21,772 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py' 2024-04-29 12:51:21,772 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py' 2024-04-29 12:51:21,772 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py' 2024-04-29 12:51:21,773 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py' 2024-04-29 12:51:21,773 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py' 2024-04-29 12:51:21,774 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py' 2024-04-29 12:51:21,774 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py' 2024-04-29 12:51:21,774 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py' 2024-04-29 12:51:21,775 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py' 2024-04-29 12:51:21,775 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py' 2024-04-29 12:51:21,776 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py' 2024-04-29 12:51:21,776 wheel INFO adding 'Bio/SearchIO/_model/__init__.py' 2024-04-29 12:51:21,776 wheel INFO adding 'Bio/SearchIO/_model/_base.py' 2024-04-29 12:51:21,777 wheel INFO adding 'Bio/SearchIO/_model/hit.py' 2024-04-29 12:51:21,777 wheel INFO adding 'Bio/SearchIO/_model/hsp.py' 2024-04-29 12:51:21,778 wheel INFO adding 'Bio/SearchIO/_model/query.py' 2024-04-29 12:51:21,779 wheel INFO adding 'Bio/SeqIO/AbiIO.py' 2024-04-29 12:51:21,779 wheel INFO adding 'Bio/SeqIO/AceIO.py' 2024-04-29 12:51:21,780 wheel INFO adding 'Bio/SeqIO/FastaIO.py' 2024-04-29 12:51:21,780 wheel INFO adding 'Bio/SeqIO/GckIO.py' 2024-04-29 12:51:21,780 wheel INFO adding 'Bio/SeqIO/IgIO.py' 2024-04-29 12:51:21,781 wheel INFO adding 'Bio/SeqIO/InsdcIO.py' 2024-04-29 12:51:21,781 wheel INFO adding 'Bio/SeqIO/Interfaces.py' 2024-04-29 12:51:21,782 wheel INFO adding 'Bio/SeqIO/NibIO.py' 2024-04-29 12:51:21,782 wheel INFO adding 'Bio/SeqIO/PdbIO.py' 2024-04-29 12:51:21,783 wheel INFO adding 'Bio/SeqIO/PhdIO.py' 2024-04-29 12:51:21,783 wheel INFO adding 'Bio/SeqIO/PirIO.py' 2024-04-29 12:51:21,784 wheel INFO adding 'Bio/SeqIO/QualityIO.py' 2024-04-29 12:51:21,785 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py' 2024-04-29 12:51:21,785 wheel INFO adding 'Bio/SeqIO/SffIO.py' 2024-04-29 12:51:21,786 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py' 2024-04-29 12:51:21,786 wheel INFO adding 'Bio/SeqIO/SwissIO.py' 2024-04-29 12:51:21,787 wheel INFO adding 'Bio/SeqIO/TabIO.py' 2024-04-29 12:51:21,787 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py' 2024-04-29 12:51:21,787 wheel INFO adding 'Bio/SeqIO/UniprotIO.py' 2024-04-29 12:51:21,788 wheel INFO adding 'Bio/SeqIO/XdnaIO.py' 2024-04-29 12:51:21,788 wheel INFO adding 'Bio/SeqIO/__init__.py' 2024-04-29 12:51:21,789 wheel INFO adding 'Bio/SeqIO/_index.py' 2024-04-29 12:51:21,790 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c' 2024-04-29 12:51:21,790 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,791 wheel INFO adding 'Bio/SeqUtils/CheckSum.py' 2024-04-29 12:51:21,791 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py' 2024-04-29 12:51:21,792 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py' 2024-04-29 12:51:21,792 wheel INFO adding 'Bio/SeqUtils/ProtParam.py' 2024-04-29 12:51:21,793 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py' 2024-04-29 12:51:21,793 wheel INFO adding 'Bio/SeqUtils/__init__.py' 2024-04-29 12:51:21,794 wheel INFO adding 'Bio/SeqUtils/lcc.py' 2024-04-29 12:51:21,794 wheel INFO adding 'Bio/Sequencing/Ace.py' 2024-04-29 12:51:21,794 wheel INFO adding 'Bio/Sequencing/Phd.py' 2024-04-29 12:51:21,795 wheel INFO adding 'Bio/Sequencing/__init__.py' 2024-04-29 12:51:21,795 wheel INFO adding 'Bio/Sequencing/Applications/_Novoalign.py' 2024-04-29 12:51:21,796 wheel INFO adding 'Bio/Sequencing/Applications/__init__.py' 2024-04-29 12:51:21,796 wheel INFO adding 'Bio/Sequencing/Applications/_bwa.py' 2024-04-29 12:51:21,797 wheel INFO adding 'Bio/Sequencing/Applications/_samtools.py' 2024-04-29 12:51:21,797 wheel INFO adding 'Bio/SwissProt/KeyWList.py' 2024-04-29 12:51:21,798 wheel INFO adding 'Bio/SwissProt/__init__.py' 2024-04-29 12:51:21,798 wheel INFO adding 'Bio/TogoWS/__init__.py' 2024-04-29 12:51:21,799 wheel INFO adding 'Bio/UniGene/__init__.py' 2024-04-29 12:51:21,799 wheel INFO adding 'Bio/UniProt/GOA.py' 2024-04-29 12:51:21,799 wheel INFO adding 'Bio/UniProt/__init__.py' 2024-04-29 12:51:21,800 wheel INFO adding 'Bio/codonalign/__init__.py' 2024-04-29 12:51:21,800 wheel INFO adding 'Bio/codonalign/codonalignment.py' 2024-04-29 12:51:21,801 wheel INFO adding 'Bio/codonalign/codonseq.py' 2024-04-29 12:51:21,802 wheel INFO adding 'Bio/motifs/__init__.py' 2024-04-29 12:51:21,802 wheel INFO adding 'Bio/motifs/_pwm.c' 2024-04-29 12:51:21,803 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so' 2024-04-29 12:51:21,803 wheel INFO adding 'Bio/motifs/alignace.py' 2024-04-29 12:51:21,803 wheel INFO adding 'Bio/motifs/clusterbuster.py' 2024-04-29 12:51:21,804 wheel INFO adding 'Bio/motifs/mast.py' 2024-04-29 12:51:21,804 wheel INFO adding 'Bio/motifs/matrix.py' 2024-04-29 12:51:21,805 wheel INFO adding 'Bio/motifs/meme.py' 2024-04-29 12:51:21,805 wheel INFO adding 'Bio/motifs/minimal.py' 2024-04-29 12:51:21,805 wheel INFO adding 'Bio/motifs/pfm.py' 2024-04-29 12:51:21,806 wheel INFO adding 'Bio/motifs/thresholds.py' 2024-04-29 12:51:21,806 wheel INFO adding 'Bio/motifs/transfac.py' 2024-04-29 12:51:21,806 wheel INFO adding 'Bio/motifs/xms.py' 2024-04-29 12:51:21,807 wheel INFO adding 'Bio/motifs/applications/__init__.py' 2024-04-29 12:51:21,807 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py' 2024-04-29 12:51:21,808 wheel INFO adding 'Bio/motifs/jaspar/__init__.py' 2024-04-29 12:51:21,808 wheel INFO adding 'Bio/motifs/jaspar/db.py' 2024-04-29 12:51:21,809 wheel INFO adding 'Bio/phenotype/__init__.py' 2024-04-29 12:51:21,809 wheel INFO adding 'Bio/phenotype/phen_micro.py' 2024-04-29 12:51:21,810 wheel INFO adding 'Bio/phenotype/pm_fitting.py' 2024-04-29 12:51:21,810 wheel INFO adding 'BioSQL/BioSeq.py' 2024-04-29 12:51:21,811 wheel INFO adding 'BioSQL/BioSeqDatabase.py' 2024-04-29 12:51:21,811 wheel INFO adding 'BioSQL/DBUtils.py' 2024-04-29 12:51:21,812 wheel INFO adding 'BioSQL/Loader.py' 2024-04-29 12:51:21,812 wheel INFO adding 'BioSQL/__init__.py' 2024-04-29 12:51:21,813 wheel INFO adding 'BioSQL/py.typed' 2024-04-29 12:51:21,813 wheel INFO adding 'biopython-1.82.dist-info/LICENSE' 2024-04-29 12:51:21,814 wheel INFO adding 'biopython-1.82.dist-info/LICENSE.rst' 2024-04-29 12:51:21,814 wheel INFO adding 'biopython-1.82.dist-info/METADATA' 2024-04-29 12:51:21,814 wheel INFO adding 'biopython-1.82.dist-info/WHEEL' 2024-04-29 12:51:21,815 wheel INFO adding 'biopython-1.82.dist-info/top_level.txt' 2024-04-29 12:51:21,818 wheel INFO adding 'biopython-1.82.dist-info/RECORD' 2024-04-29 12:51:21,822 wheel INFO removing build/bdist.linux-x86_64/wheel 2024-04-29 12:51:21,848 gpep517 INFO The backend produced .dist/biopython-1.82-cp312-cp312-linux_x86_64.whl biopython-1.82-cp312-cp312-linux_x86_64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 7.3 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r1.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-x86_64.so.1 >>> py3-biopython*: Package size: 12.5 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r1.apk >>> py3-biopython: Build complete at Mon, 29 Apr 2024 12:51:27 +0000 elapsed time 0h 0m 33s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/32) Purging .makedepends-py3-biopython (20240429.125058) (2/32) Purging py3-gpep517-pyc (15-r2) (3/32) Purging py3-gpep517 (15-r2) (4/32) Purging py3-installer-pyc (0.7.0-r2) (5/32) Purging py3-installer (0.7.0-r2) (6/32) Purging py3-setuptools-pyc (69.5.1-r0) (7/32) Purging py3-setuptools (69.5.1-r0) (8/32) Purging py3-wheel-pyc (0.42.0-r1) (9/32) Purging py3-wheel (0.42.0-r1) (10/32) Purging py3-packaging-pyc (24.0-r1) (11/32) Purging py3-packaging (24.0-r1) (12/32) Purging py3-parsing-pyc (3.1.2-r1) (13/32) Purging py3-parsing (3.1.2-r1) (14/32) Purging py3-numpy-dev (1.25.2-r1) (15/32) Purging py3-numpy-pyc (1.25.2-r1) (16/32) Purging py3-numpy (1.25.2-r1) (17/32) Purging openblas (0.3.27-r0) (18/32) Purging python3-dev (3.12.3-r1) (19/32) Purging python3-pyc (3.12.3-r1) (20/32) Purging python3-pycache-pyc0 (3.12.3-r1) (21/32) Purging pyc (3.12.3-r1) (22/32) Purging python3 (3.12.3-r1) (23/32) Purging gdbm (1.23-r1) (24/32) Purging libbz2 (1.0.8-r6) (25/32) Purging libffi (3.4.6-r0) (26/32) Purging libgfortran (13.2.1_git20240309-r0) (27/32) Purging libpanelw (6.4_p20240330-r0) (28/32) Purging libquadmath (13.2.1_git20240309-r0) (29/32) Purging mpdecimal (4.0.0-r0) (30/32) Purging readline (8.2.10-r0) (31/32) Purging sqlite-libs (3.45.3-r0) (32/32) Purging xz-libs (5.6.1-r3) Executing busybox-1.36.1-r26.trigger OK: 472 MiB in 107 packages >>> py3-biopython: Updating the community/x86_64 repository index... >>> py3-biopython: Signing the index...