>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.13.0-r3) started Thu, 09 May 2024 06:11:35 +0000 >>> py3-kallisto: Checking sanity of /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/61) Installing gdbm (1.23-r1) (2/61) Installing mpdecimal (4.0.0-r0) (3/61) Installing libpanelw (6.4_p20240420-r0) (4/61) Installing readline (8.2.10-r0) (5/61) Installing sqlite-libs (3.45.3-r0) (6/61) Installing python3 (3.12.3-r1) (7/61) Installing python3-pycache-pyc0 (3.12.3-r1) (8/61) Installing pyc (3.12.3-r1) (9/61) Installing python3-pyc (3.12.3-r1) (10/61) Installing py3-click (8.1.7-r2) (11/61) Installing py3-click-pyc (8.1.7-r2) (12/61) Installing libquadmath (13.2.1_git20240309-r0) (13/61) Installing libgfortran (13.2.1_git20240309-r0) (14/61) Installing openblas (0.3.27-r0) (15/61) Installing py3-numpy (1.25.2-r1) (16/61) Installing py3-numpy-pyc (1.25.2-r1) (17/61) Installing py3-parsing (3.1.2-r1) (18/61) Installing py3-parsing-pyc (3.1.2-r1) (19/61) Installing py3-packaging (24.0-r1) (20/61) Installing py3-packaging-pyc (24.0-r1) (21/61) Installing py3-platformdirs (4.2.1-r0) (22/61) Installing py3-platformdirs-pyc (4.2.1-r0) (23/61) Installing py3-certifi (2024.2.2-r1) (24/61) Installing py3-certifi-pyc (2024.2.2-r1) (25/61) Installing py3-charset-normalizer (3.3.2-r1) (26/61) Installing py3-charset-normalizer-pyc (3.3.2-r1) (27/61) Installing py3-idna (3.7-r0) (28/61) Installing py3-idna-pyc (3.7-r0) (29/61) Installing py3-urllib3 (1.26.18-r1) (30/61) Installing py3-urllib3-pyc (1.26.18-r1) (31/61) Installing py3-requests (2.31.0-r2) (32/61) Installing py3-requests-pyc (2.31.0-r2) (33/61) Installing py3-pooch (1.8.1-r1) (34/61) Installing py3-pooch-pyc (1.8.1-r1) (35/61) Installing py3-scipy (1.11.4-r2) (36/61) Installing py3-scipy-pyc (1.11.4-r2) (37/61) Installing py3-fastjsonschema (2.19.1-r2) (38/61) Installing py3-fastjsonschema-pyc (2.19.1-r2) (39/61) Installing py3-lark-parser (1.1.9-r1) (40/61) Installing py3-lark-parser-pyc (1.1.9-r1) (41/61) Installing py3-poetry-core (1.8.1-r1) (42/61) Installing py3-poetry-core-pyc (1.8.1-r1) (43/61) Installing py3-installer (0.7.0-r2) (44/61) Installing py3-installer-pyc (0.7.0-r2) (45/61) Installing py3-gpep517 (15-r2) (46/61) Installing py3-gpep517-pyc (15-r2) (47/61) Installing py3-wheel (0.42.0-r1) (48/61) Installing py3-wheel-pyc (0.42.0-r1) (49/61) Installing py3-iniconfig (2.0.0-r1) (50/61) Installing py3-iniconfig-pyc (2.0.0-r1) (51/61) Installing py3-pluggy (1.5.0-r0) (52/61) Installing py3-pluggy-pyc (1.5.0-r0) (53/61) Installing py3-py (1.11.0-r3) (54/61) Installing py3-py-pyc (1.11.0-r3) (55/61) Installing py3-pytest (8.2.0-r0) (56/61) Installing py3-pytest-pyc (8.2.0-r0) (57/61) Installing py3-setuptools (69.5.1-r0) (58/61) Installing py3-setuptools-pyc (69.5.1-r0) (59/61) Installing py3-pytest-runner (6.0.1-r1) (60/61) Installing py3-pytest-runner-pyc (6.0.1-r1) (61/61) Installing .makedepends-py3-kallisto (20240509.061140) Executing busybox-1.36.1-r26.trigger OK: 1878 MiB in 184 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/kallisto-1.0.10.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.20/kallisto-1.0.10.tar.gz.part' kallisto-1.0.10.tar. 100% |********************************| 158k 0:00:00 ETA '/var/cache/distfiles/v3.20/kallisto-1.0.10.tar.gz.part' saved >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.20/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2024-05-09 06:11:43,198 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2024-05-09 06:11:43,392 poetry.core.masonry.builders.wheel INFO Building wheel fatal: not a git repository (or any of the parent directories): .git 2024-05-09 06:11:43,441 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2024-05-09 06:11:43,442 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.2.0, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 2.28s ============================== >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto-pyc*: Package size: 608.0 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 500.0 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Thu, 09 May 2024 06:11:47 +0000 elapsed time 0h 0m 12s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/61) Purging .makedepends-py3-kallisto (20240509.061140) (2/61) Purging py3-click-pyc (8.1.7-r2) (3/61) Purging py3-click (8.1.7-r2) (4/61) Purging py3-scipy-pyc (1.11.4-r2) (5/61) Purging py3-scipy (1.11.4-r2) (6/61) Purging py3-pooch-pyc (1.8.1-r1) (7/61) Purging py3-pooch (1.8.1-r1) (8/61) Purging py3-platformdirs-pyc (4.2.1-r0) (9/61) Purging py3-platformdirs (4.2.1-r0) (10/61) Purging py3-requests-pyc (2.31.0-r2) (11/61) Purging py3-requests (2.31.0-r2) (12/61) Purging py3-certifi-pyc (2024.2.2-r1) (13/61) Purging py3-certifi (2024.2.2-r1) (14/61) Purging py3-charset-normalizer-pyc (3.3.2-r1) (15/61) Purging py3-charset-normalizer (3.3.2-r1) (16/61) Purging py3-idna-pyc (3.7-r0) (17/61) Purging py3-idna (3.7-r0) (18/61) Purging py3-urllib3-pyc (1.26.18-r1) (19/61) Purging py3-urllib3 (1.26.18-r1) (20/61) Purging py3-numpy-pyc (1.25.2-r1) (21/61) Purging py3-numpy (1.25.2-r1) (22/61) Purging openblas (0.3.27-r0) (23/61) Purging py3-poetry-core-pyc (1.8.1-r1) (24/61) Purging py3-poetry-core (1.8.1-r1) (25/61) Purging py3-fastjsonschema-pyc (2.19.1-r2) (26/61) Purging py3-fastjsonschema (2.19.1-r2) (27/61) Purging py3-lark-parser-pyc (1.1.9-r1) (28/61) Purging py3-lark-parser (1.1.9-r1) (29/61) Purging py3-gpep517-pyc (15-r2) (30/61) Purging py3-gpep517 (15-r2) (31/61) Purging py3-installer-pyc (0.7.0-r2) (32/61) Purging py3-installer (0.7.0-r2) (33/61) Purging py3-wheel-pyc (0.42.0-r1) (34/61) Purging py3-wheel (0.42.0-r1) (35/61) Purging py3-pytest-runner-pyc (6.0.1-r1) (36/61) Purging py3-pytest-runner (6.0.1-r1) (37/61) Purging py3-pytest-pyc (8.2.0-r0) (38/61) Purging py3-pytest (8.2.0-r0) (39/61) Purging py3-iniconfig-pyc (2.0.0-r1) (40/61) Purging py3-iniconfig (2.0.0-r1) (41/61) Purging py3-pluggy-pyc (1.5.0-r0) (42/61) Purging py3-pluggy (1.5.0-r0) (43/61) Purging py3-py-pyc (1.11.0-r3) (44/61) Purging py3-py (1.11.0-r3) (45/61) Purging py3-setuptools-pyc (69.5.1-r0) (46/61) Purging py3-setuptools (69.5.1-r0) (47/61) Purging py3-packaging-pyc (24.0-r1) (48/61) Purging py3-packaging (24.0-r1) (49/61) Purging py3-parsing-pyc (3.1.2-r1) (50/61) Purging py3-parsing (3.1.2-r1) (51/61) Purging python3-pyc (3.12.3-r1) (52/61) Purging python3-pycache-pyc0 (3.12.3-r1) (53/61) Purging pyc (3.12.3-r1) (54/61) Purging python3 (3.12.3-r1) (55/61) Purging gdbm (1.23-r1) (56/61) Purging libgfortran (13.2.1_git20240309-r0) (57/61) Purging libpanelw (6.4_p20240420-r0) (58/61) Purging libquadmath (13.2.1_git20240309-r0) (59/61) Purging mpdecimal (4.0.0-r0) (60/61) Purging readline (8.2.10-r0) (61/61) Purging sqlite-libs (3.45.3-r0) Executing busybox-1.36.1-r26.trigger OK: 1693 MiB in 123 packages >>> py3-kallisto: Updating the community/x86_64 repository index... >>> py3-kallisto: Signing the index...