>>> py3-bioframe: Building community/py3-bioframe 0.7.2-r1 (using abuild 3.14.1-r1) started Mon, 11 Nov 2024 14:31:28 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/106) Installing libgfortran (14.2.0-r4) (2/106) Installing openblas (0.3.28-r0) (3/106) Installing libbz2 (1.0.8-r6) (4/106) Installing libffi (3.4.6-r0) (5/106) Installing gdbm (1.24-r0) (6/106) Installing xz-libs (5.6.3-r0) (7/106) Installing mpdecimal (4.0.0-r0) (8/106) Installing libpanelw (6.5_p20241006-r2) (9/106) Installing sqlite-libs (3.47.0-r0) (10/106) Installing python3 (3.12.7-r1) (11/106) Installing python3-pycache-pyc0 (3.12.7-r1) (12/106) Installing pyc (3.12.7-r1) (13/106) Installing py3-contourpy-pyc (1.3.0-r0) (14/106) Installing py3-cycler (0.12.1-r1) (15/106) Installing py3-cycler-pyc (0.12.1-r1) (16/106) Installing py3-six (1.16.0-r9) (17/106) Installing py3-six-pyc (1.16.0-r9) (18/106) Installing py3-dateutil (2.9.0-r1) (19/106) Installing py3-dateutil-pyc (2.9.0-r1) (20/106) Installing py3-fonttools (4.54.1-r0) (21/106) Installing py3-fonttools-pyc (4.54.1-r0) (22/106) Installing py3-kiwisolver (1.4.5-r1) (23/106) Installing py3-kiwisolver-pyc (1.4.5-r1) (24/106) Installing py3-matplotlib-fonts (3.9.1-r0) (25/106) Installing py3-matplotlib-data (3.9.1-r0) (26/106) Installing py3-parsing (3.1.4-r0) (27/106) Installing py3-parsing-pyc (3.1.4-r0) (28/106) Installing py3-packaging (24.2-r0) (29/106) Installing py3-packaging-pyc (24.2-r0) (30/106) Installing libpng (1.6.44-r0) (31/106) Installing freetype (2.13.3-r0) (32/106) Installing libimagequant (4.2.2-r0) (33/106) Installing libjpeg-turbo (3.0.4-r0) (34/106) Installing lcms2 (2.16-r0) (35/106) Installing openjpeg (2.5.2-r0) (36/106) Installing libsharpyuv (1.4.0-r0) (37/106) Installing libwebp (1.4.0-r0) (38/106) Installing tiff (4.7.0-r0) (39/106) Installing libwebpdemux (1.4.0-r0) (40/106) Installing libwebpmux (1.4.0-r0) (41/106) Installing libxau (1.0.11-r4) (42/106) Installing libmd (1.1.0-r0) (43/106) Installing libbsd (0.12.2-r0) (44/106) Installing libxdmcp (1.1.5-r1) (45/106) Installing libxcb (1.16.1-r0) (46/106) Installing py3-pillow (11.0.0-r0) (47/106) Installing py3-pillow-pyc (11.0.0-r0) (48/106) Installing py3-matplotlib-pyc (3.9.1-r0) (49/106) Installing py3-numpy-pyc (2.1.2-r0) (50/106) Installing python3-pyc (3.12.7-r1) (51/106) Installing py3-numpy (2.1.2-r0) (52/106) Installing py3-contourpy (1.3.0-r0) (53/106) Installing qhull (2020.2-r3) (54/106) Installing py3-matplotlib (3.9.1-r0) (55/106) Installing py3-tz (2024.2-r0) (56/106) Installing py3-tz-pyc (2024.2-r0) (57/106) Installing py3-attrs (24.2.0-r0) (58/106) Installing py3-attrs-pyc (24.2.0-r0) (59/106) Installing py3-tzdata (2024.2-r0) (60/106) Installing py3-tzdata-pyc (2024.2-r0) (61/106) Installing py3-pandas (2.2.3-r0) (62/106) Installing py3-pandas-pyc (2.2.3-r0) (63/106) Installing yaml (0.2.5-r2) (64/106) Installing py3-yaml (6.0.2-r0) (65/106) Installing py3-yaml-pyc (6.0.2-r0) (66/106) Installing py3-certifi (2024.8.30-r0) (67/106) Installing py3-certifi-pyc (2024.8.30-r0) (68/106) Installing py3-charset-normalizer (3.4.0-r0) (69/106) Installing py3-charset-normalizer-pyc (3.4.0-r0) (70/106) Installing py3-idna (3.10-r0) (71/106) Installing py3-idna-pyc (3.10-r0) (72/106) Installing py3-urllib3 (1.26.20-r0) (73/106) Installing py3-urllib3-pyc (1.26.20-r0) (74/106) Installing py3-requests (2.32.3-r0) (75/106) Installing py3-requests-pyc (2.32.3-r0) (76/106) Installing py3-typing-extensions (4.12.2-r0) (77/106) Installing py3-typing-extensions-pyc (4.12.2-r0) (78/106) Installing py3-setuptools (70.3.0-r0) (79/106) Installing py3-setuptools-pyc (70.3.0-r0) (80/106) Installing py3-installer (0.7.0-r2) (81/106) Installing py3-installer-pyc (0.7.0-r2) (82/106) Installing py3-gpep517 (16-r0) (83/106) Installing py3-gpep517-pyc (16-r0) (84/106) Installing py3-editables (0.5-r2) (85/106) Installing py3-editables-pyc (0.5-r2) (86/106) Installing py3-pathspec (0.12.1-r2) (87/106) Installing py3-pathspec-pyc (0.12.1-r2) (88/106) Installing py3-pluggy (1.5.0-r0) (89/106) Installing py3-pluggy-pyc (1.5.0-r0) (90/106) Installing py3-trove-classifiers (2024.10.21.16-r0) (91/106) Installing py3-trove-classifiers-pyc (2024.10.21.16-r0) (92/106) Installing py3-hatchling (1.26.1-r0) (93/106) Installing py3-hatchling-pyc (1.26.1-r0) (94/106) Installing py3-wheel (0.43.0-r0) (95/106) Installing py3-wheel-pyc (0.43.0-r0) (96/106) Installing py3-execnet (2.1.1-r0) (97/106) Installing py3-execnet-pyc (2.1.1-r0) (98/106) Installing py3-iniconfig (2.0.0-r1) (99/106) Installing py3-iniconfig-pyc (2.0.0-r1) (100/106) Installing py3-py (1.11.0-r4) (101/106) Installing py3-py-pyc (1.11.0-r4) (102/106) Installing py3-pytest (8.3.3-r0) (103/106) Installing py3-pytest-pyc (8.3.3-r0) (104/106) Installing py3-pytest-xdist (3.6.1-r0) (105/106) Installing py3-pytest-xdist-pyc (3.6.1-r0) (106/106) Installing .makedepends-py3-bioframe (20241111.143131) Executing busybox-1.37.0-r6.trigger OK: 582 MiB in 207 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/bioframe-0.7.2.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.21/bioframe-0.7.2.tar.gz.part' bioframe-0.7.2.tar.g 100% |********************************| 950k 0:00:00 ETA '/var/cache/distfiles/v3.21/bioframe-0.7.2.tar.gz.part' saved >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/bioframe-0.7.2.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.7.2.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/v3.21/bioframe-0.7.2.tar.gz... 2024-11-11 14:31:32,681 gpep517 INFO Building wheel via backend hatchling.build 2024-11-11 14:31:32,750 gpep517 INFO The backend produced .dist/bioframe-0.7.2-py2.py3-none-any.whl bioframe-0.7.2-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.7.2 configfile: pyproject.toml plugins: xdist-3.6.1 created: 80/80 workers 80 workers [68 items] .s.......s.....s.................................................... [100%] ======================== 65 passed, 3 skipped in 10.74s ======================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85/popen-gw68/test_discovery_via_path_in_non0 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85/popen-gw68/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85/popen-gw68 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85/popen-gw68' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d4c8b86b-4d34-4bb3-9f9a-d8e2b102cd85' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.7.2-r1.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 254.7 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.7.2-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 231.7 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.7.2-r1.apk >>> py3-bioframe: Build complete at Mon, 11 Nov 2024 14:31:44 +0000 elapsed time 0h 0m 16s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/106) Purging .makedepends-py3-bioframe (20241111.143131) (2/106) Purging py3-matplotlib-pyc (3.9.1-r0) (3/106) Purging py3-matplotlib (3.9.1-r0) (4/106) Purging py3-contourpy-pyc (1.3.0-r0) (5/106) Purging py3-contourpy (1.3.0-r0) (6/106) Purging py3-cycler-pyc (0.12.1-r1) (7/106) Purging py3-cycler (0.12.1-r1) (8/106) Purging py3-fonttools-pyc (4.54.1-r0) (9/106) Purging py3-fonttools (4.54.1-r0) (10/106) Purging py3-kiwisolver-pyc (1.4.5-r1) (11/106) Purging py3-kiwisolver (1.4.5-r1) (12/106) Purging py3-matplotlib-data (3.9.1-r0) (13/106) Purging py3-matplotlib-fonts (3.9.1-r0) (14/106) Purging py3-pillow-pyc (11.0.0-r0) (15/106) Purging py3-pillow (11.0.0-r0) (16/106) Purging py3-pandas-pyc (2.2.3-r0) (17/106) Purging py3-pandas (2.2.3-r0) (18/106) Purging py3-dateutil-pyc (2.9.0-r1) (19/106) Purging py3-dateutil (2.9.0-r1) (20/106) Purging py3-six-pyc (1.16.0-r9) (21/106) Purging py3-six (1.16.0-r9) (22/106) Purging py3-numpy-pyc (2.1.2-r0) (23/106) Purging py3-numpy (2.1.2-r0) (24/106) Purging openblas (0.3.28-r0) (25/106) Purging py3-tz-pyc (2024.2-r0) (26/106) Purging py3-tz (2024.2-r0) (27/106) Purging py3-tzdata-pyc (2024.2-r0) (28/106) Purging py3-tzdata (2024.2-r0) (29/106) Purging py3-attrs-pyc (24.2.0-r0) (30/106) Purging py3-attrs (24.2.0-r0) (31/106) Purging py3-yaml-pyc (6.0.2-r0) (32/106) Purging py3-yaml (6.0.2-r0) (33/106) Purging py3-requests-pyc (2.32.3-r0) (34/106) Purging py3-requests (2.32.3-r0) (35/106) Purging py3-certifi-pyc (2024.8.30-r0) (36/106) Purging py3-certifi (2024.8.30-r0) (37/106) Purging py3-charset-normalizer-pyc (3.4.0-r0) (38/106) Purging py3-charset-normalizer (3.4.0-r0) (39/106) Purging py3-idna-pyc (3.10-r0) (40/106) Purging py3-idna (3.10-r0) (41/106) Purging py3-urllib3-pyc (1.26.20-r0) (42/106) Purging py3-urllib3 (1.26.20-r0) (43/106) Purging py3-typing-extensions-pyc (4.12.2-r0) (44/106) Purging py3-typing-extensions (4.12.2-r0) (45/106) Purging py3-setuptools-pyc (70.3.0-r0) (46/106) Purging py3-setuptools (70.3.0-r0) (47/106) Purging py3-gpep517-pyc (16-r0) (48/106) Purging py3-gpep517 (16-r0) (49/106) Purging py3-installer-pyc (0.7.0-r2) (50/106) Purging py3-installer (0.7.0-r2) (51/106) Purging py3-hatchling-pyc (1.26.1-r0) (52/106) Purging py3-hatchling (1.26.1-r0) (53/106) Purging py3-editables-pyc (0.5-r2) (54/106) Purging py3-editables (0.5-r2) (55/106) Purging py3-pathspec-pyc (0.12.1-r2) (56/106) Purging py3-pathspec (0.12.1-r2) (57/106) Purging py3-trove-classifiers-pyc (2024.10.21.16-r0) (58/106) Purging py3-trove-classifiers (2024.10.21.16-r0) (59/106) Purging py3-wheel-pyc (0.43.0-r0) (60/106) Purging py3-wheel (0.43.0-r0) (61/106) Purging py3-pytest-xdist-pyc (3.6.1-r0) (62/106) Purging py3-pytest-xdist (3.6.1-r0) (63/106) Purging py3-execnet-pyc (2.1.1-r0) (64/106) Purging py3-execnet (2.1.1-r0) (65/106) Purging py3-pytest-pyc (8.3.3-r0) (66/106) Purging py3-pytest (8.3.3-r0) (67/106) Purging py3-iniconfig-pyc (2.0.0-r1) (68/106) Purging py3-iniconfig (2.0.0-r1) (69/106) Purging py3-packaging-pyc (24.2-r0) (70/106) Purging py3-packaging (24.2-r0) (71/106) Purging py3-parsing-pyc (3.1.4-r0) (72/106) Purging py3-parsing (3.1.4-r0) (73/106) Purging py3-pluggy-pyc (1.5.0-r0) (74/106) Purging py3-pluggy (1.5.0-r0) (75/106) Purging py3-py-pyc (1.11.0-r4) (76/106) Purging py3-py (1.11.0-r4) (77/106) Purging python3-pyc (3.12.7-r1) (78/106) Purging python3-pycache-pyc0 (3.12.7-r1) (79/106) Purging pyc (3.12.7-r1) (80/106) Purging python3 (3.12.7-r1) (81/106) Purging freetype (2.13.3-r0) (82/106) Purging gdbm (1.24-r0) (83/106) Purging lcms2 (2.16-r0) (84/106) Purging libbz2 (1.0.8-r6) (85/106) Purging libffi (3.4.6-r0) (86/106) Purging libgfortran (14.2.0-r4) (87/106) Purging libimagequant (4.2.2-r0) (88/106) Purging libpanelw (6.5_p20241006-r2) (89/106) Purging libpng (1.6.44-r0) (90/106) Purging libwebpdemux (1.4.0-r0) (91/106) Purging libwebpmux (1.4.0-r0) (92/106) Purging libxcb (1.16.1-r0) (93/106) Purging libxdmcp (1.1.5-r1) (94/106) Purging mpdecimal (4.0.0-r0) (95/106) Purging openjpeg (2.5.2-r0) (96/106) Purging qhull (2020.2-r3) (97/106) Purging sqlite-libs (3.47.0-r0) (98/106) Purging tiff (4.7.0-r0) (99/106) Purging xz-libs (5.6.3-r0) (100/106) Purging yaml (0.2.5-r2) (101/106) Purging libbsd (0.12.2-r0) (102/106) Purging libjpeg-turbo (3.0.4-r0) (103/106) Purging libmd (1.1.0-r0) (104/106) Purging libwebp (1.4.0-r0) (105/106) Purging libsharpyuv (1.4.0-r0) (106/106) Purging libxau (1.0.11-r4) Executing busybox-1.37.0-r6.trigger OK: 394 MiB in 101 packages >>> py3-bioframe: Updating the community/aarch64 repository index... >>> py3-bioframe: Signing the index...