>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.14.1-r1) started Tue, 12 Nov 2024 05:46:40 +0000 >>> py3-kallisto: Validating /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/63) Installing libbz2 (1.0.8-r6) (2/63) Installing libffi (3.4.6-r0) (3/63) Installing gdbm (1.24-r0) (4/63) Installing xz-libs (5.6.3-r0) (5/63) Installing mpdecimal (4.0.0-r0) (6/63) Installing libpanelw (6.5_p20241006-r3) (7/63) Installing sqlite-libs (3.47.0-r0) (8/63) Installing python3 (3.12.7-r1) (9/63) Installing python3-pycache-pyc0 (3.12.7-r1) (10/63) Installing pyc (3.12.7-r1) (11/63) Installing python3-pyc (3.12.7-r1) (12/63) Installing py3-click (8.1.7-r2) (13/63) Installing py3-click-pyc (8.1.7-r2) (14/63) Installing libquadmath (14.2.0-r4) (15/63) Installing libgfortran (14.2.0-r4) (16/63) Installing openblas (0.3.28-r0) (17/63) Installing py3-numpy (2.1.2-r0) (18/63) Installing py3-numpy-pyc (2.1.2-r0) (19/63) Installing py3-parsing (3.1.4-r0) (20/63) Installing py3-parsing-pyc (3.1.4-r0) (21/63) Installing py3-packaging (24.2-r0) (22/63) Installing py3-packaging-pyc (24.2-r0) (23/63) Installing py3-platformdirs (4.3.6-r0) (24/63) Installing py3-platformdirs-pyc (4.3.6-r0) (25/63) Installing py3-certifi (2024.8.30-r0) (26/63) Installing py3-certifi-pyc (2024.8.30-r0) (27/63) Installing py3-charset-normalizer (3.4.0-r0) (28/63) Installing py3-charset-normalizer-pyc (3.4.0-r0) (29/63) Installing py3-idna (3.10-r0) (30/63) Installing py3-idna-pyc (3.10-r0) (31/63) Installing py3-urllib3 (1.26.20-r0) (32/63) Installing py3-urllib3-pyc (1.26.20-r0) (33/63) Installing py3-requests (2.32.3-r0) (34/63) Installing py3-requests-pyc (2.32.3-r0) (35/63) Installing py3-pooch (1.8.2-r0) (36/63) Installing py3-pooch-pyc (1.8.2-r0) (37/63) Installing py3-scipy (1.13.1-r1) (38/63) Installing py3-scipy-pyc (1.13.1-r1) (39/63) Installing py3-fastjsonschema (2.20.0-r0) (40/63) Installing py3-fastjsonschema-pyc (2.20.0-r0) (41/63) Installing py3-lark-parser (1.1.9-r1) (42/63) Installing py3-lark-parser-pyc (1.1.9-r1) (43/63) Installing py3-poetry-core (1.9.1-r0) (44/63) Installing py3-poetry-core-pyc (1.9.1-r0) (45/63) Installing py3-installer (0.7.0-r2) (46/63) Installing py3-installer-pyc (0.7.0-r2) (47/63) Installing py3-gpep517 (16-r0) (48/63) Installing py3-gpep517-pyc (16-r0) (49/63) Installing py3-wheel (0.43.0-r0) (50/63) Installing py3-wheel-pyc (0.43.0-r0) (51/63) Installing py3-iniconfig (2.0.0-r1) (52/63) Installing py3-iniconfig-pyc (2.0.0-r1) (53/63) Installing py3-pluggy (1.5.0-r0) (54/63) Installing py3-pluggy-pyc (1.5.0-r0) (55/63) Installing py3-py (1.11.0-r4) (56/63) Installing py3-py-pyc (1.11.0-r4) (57/63) Installing py3-pytest (8.3.3-r0) (58/63) Installing py3-pytest-pyc (8.3.3-r0) (59/63) Installing py3-setuptools (70.3.0-r0) (60/63) Installing py3-setuptools-pyc (70.3.0-r0) (61/63) Installing py3-pytest-runner (6.0.1-r1) (62/63) Installing py3-pytest-runner-pyc (6.0.1-r1) (63/63) Installing .makedepends-py3-kallisto (20241112.054657) Executing busybox-1.37.0-r6.trigger OK: 573 MiB in 164 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/kallisto-1.0.10.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz.part' kallisto-1.0.10.tar. 100% |********************************| 158k 0:00:00 ETA '/var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz.part' saved >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2024-11-12 05:46:59,296 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2024-11-12 05:46:59,462 poetry.core.masonry.builders.wheel INFO Building wheel 2024-11-12 05:46:59,488 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2024-11-12 05:46:59,488 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 1.55s ============================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849/popen-gw38/test_discovery_via_path_in_non0 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849/popen-gw38/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849/popen-gw38 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849/popen-gw38' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849 <class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-d525447f-8ef8-41e1-82a0-9bb98dc37849' warnings.warn( >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto-pyc*: Package size: 510.9 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 390.1 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Tue, 12 Nov 2024 05:47:02 +0000 elapsed time 0h 0m 22s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/63) Purging .makedepends-py3-kallisto (20241112.054657) (2/63) Purging py3-click-pyc (8.1.7-r2) (3/63) Purging py3-click (8.1.7-r2) (4/63) Purging py3-scipy-pyc (1.13.1-r1) (5/63) Purging py3-scipy (1.13.1-r1) (6/63) Purging py3-pooch-pyc (1.8.2-r0) (7/63) Purging py3-pooch (1.8.2-r0) (8/63) Purging py3-platformdirs-pyc (4.3.6-r0) (9/63) Purging py3-platformdirs (4.3.6-r0) (10/63) Purging py3-requests-pyc (2.32.3-r0) (11/63) Purging py3-requests (2.32.3-r0) (12/63) Purging py3-certifi-pyc (2024.8.30-r0) (13/63) Purging py3-certifi (2024.8.30-r0) (14/63) Purging py3-charset-normalizer-pyc (3.4.0-r0) (15/63) Purging py3-charset-normalizer (3.4.0-r0) (16/63) Purging py3-idna-pyc (3.10-r0) (17/63) Purging py3-idna (3.10-r0) (18/63) Purging py3-urllib3-pyc (1.26.20-r0) (19/63) Purging py3-urllib3 (1.26.20-r0) (20/63) Purging py3-numpy-pyc (2.1.2-r0) (21/63) Purging py3-numpy (2.1.2-r0) (22/63) Purging openblas (0.3.28-r0) (23/63) Purging py3-poetry-core-pyc (1.9.1-r0) (24/63) Purging py3-poetry-core (1.9.1-r0) (25/63) Purging py3-fastjsonschema-pyc (2.20.0-r0) (26/63) Purging py3-fastjsonschema (2.20.0-r0) (27/63) Purging py3-lark-parser-pyc (1.1.9-r1) (28/63) Purging py3-lark-parser (1.1.9-r1) (29/63) Purging py3-gpep517-pyc (16-r0) (30/63) Purging py3-gpep517 (16-r0) (31/63) Purging py3-installer-pyc (0.7.0-r2) (32/63) Purging py3-installer (0.7.0-r2) (33/63) Purging py3-wheel-pyc (0.43.0-r0) (34/63) Purging py3-wheel (0.43.0-r0) (35/63) Purging py3-pytest-runner-pyc (6.0.1-r1) (36/63) Purging py3-pytest-runner (6.0.1-r1) (37/63) Purging py3-pytest-pyc (8.3.3-r0) (38/63) Purging py3-pytest (8.3.3-r0) (39/63) Purging py3-iniconfig-pyc (2.0.0-r1) (40/63) Purging py3-iniconfig (2.0.0-r1) (41/63) Purging py3-pluggy-pyc (1.5.0-r0) (42/63) Purging py3-pluggy (1.5.0-r0) (43/63) Purging py3-py-pyc (1.11.0-r4) (44/63) Purging py3-py (1.11.0-r4) (45/63) Purging py3-setuptools-pyc (70.3.0-r0) (46/63) Purging py3-setuptools (70.3.0-r0) (47/63) Purging py3-packaging-pyc (24.2-r0) (48/63) Purging py3-packaging (24.2-r0) (49/63) Purging py3-parsing-pyc (3.1.4-r0) (50/63) Purging py3-parsing (3.1.4-r0) (51/63) Purging python3-pyc (3.12.7-r1) (52/63) Purging python3-pycache-pyc0 (3.12.7-r1) (53/63) Purging pyc (3.12.7-r1) (54/63) Purging python3 (3.12.7-r1) (55/63) Purging gdbm (1.24-r0) (56/63) Purging libbz2 (1.0.8-r6) (57/63) Purging libffi (3.4.6-r0) (58/63) Purging libgfortran (14.2.0-r4) (59/63) Purging libpanelw (6.5_p20241006-r3) (60/63) Purging libquadmath (14.2.0-r4) (61/63) Purging mpdecimal (4.0.0-r0) (62/63) Purging sqlite-libs (3.47.0-r0) (63/63) Purging xz-libs (5.6.3-r0) Executing busybox-1.37.0-r6.trigger OK: 396 MiB in 101 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...