>>> py3-biopython: Building community/py3-biopython 1.84-r0 (using abuild 3.14.1-r3) started Sun, 24 Nov 2024 16:02:26 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/31) Installing libquadmath (14.2.0-r4) (2/31) Installing libgfortran (14.2.0-r4) (3/31) Installing openblas (0.3.28-r0) (4/31) Installing libbz2 (1.0.8-r6) (5/31) Installing libffi (3.4.6-r0) (6/31) Installing gdbm (1.24-r0) (7/31) Installing xz-libs (5.6.3-r0) (8/31) Installing mpdecimal (4.0.0-r0) (9/31) Installing libpanelw (6.5_p20241006-r3) (10/31) Installing sqlite-libs (3.47.0-r0) (11/31) Installing python3 (3.12.7-r1) (12/31) Installing python3-pycache-pyc0 (3.12.7-r1) (13/31) Installing pyc (3.12.7-r1) (14/31) Installing py3-numpy-pyc (2.1.3-r0) (15/31) Installing python3-pyc (3.12.7-r1) (16/31) Installing py3-numpy (2.1.3-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (16-r0) (20/31) Installing py3-gpep517-pyc (16-r0) (21/31) Installing py3-parsing (3.1.4-r0) (22/31) Installing py3-parsing-pyc (3.1.4-r0) (23/31) Installing py3-packaging (24.2-r0) (24/31) Installing py3-packaging-pyc (24.2-r0) (25/31) Installing py3-setuptools (70.3.0-r0) (26/31) Installing py3-setuptools-pyc (70.3.0-r0) (27/31) Installing py3-wheel (0.43.0-r0) (28/31) Installing py3-wheel-pyc (0.43.0-r0) (29/31) Installing py3-numpy-dev (2.1.3-r0) (30/31) Installing python3-dev (3.12.7-r1) (31/31) Installing .makedepends-py3-biopython (20241124.160227) Executing busybox-1.37.0-r8.trigger OK: 591 MiB in 132 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/biopython-1.84.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.84.tar.gz Connecting to files.pythonhosted.org (151.101.128.223:443) Connecting to files.pythonhosted.org (151.101.128.223:443) saving to '/var/cache/distfiles/v3.21/biopython-1.84.tar.gz.part' biopython-1.84.tar.g 100% |********************************| 24.5M 0:00:00 ETA '/var/cache/distfiles/v3.21/biopython-1.84.tar.gz.part' saved >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/biopython-1.84.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.84.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/v3.21/biopython-1.84.tar.gz... 2024-11-24 16:02:30,216 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-11-24 16:02:30,229 root INFO running bdist_wheel 2024-11-24 16:02:30,244 root INFO running build 2024-11-24 16:02:30,244 root INFO running build_py 2024-11-24 16:02:30,247 root INFO creating build 2024-11-24 16:02:30,247 root INFO creating build/lib.linux-x86_64-cpython-312 2024-11-24 16:02:30,247 root INFO creating build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,247 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,247 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,247 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,248 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,248 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,248 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,249 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,249 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,249 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,249 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,250 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,250 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,250 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,250 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-11-24 16:02:30,251 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-11-24 16:02:30,251 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-11-24 16:02:30,251 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,251 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,252 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,252 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,252 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,252 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,253 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,253 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,253 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,253 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,253 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,254 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,254 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,254 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,254 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,254 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,255 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,255 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,255 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,255 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,255 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,256 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,256 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,256 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,256 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,257 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,257 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,257 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,257 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,257 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,258 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,258 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,258 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,258 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,258 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,259 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-11-24 16:02:30,259 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-11-24 16:02:30,259 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-11-24 16:02:30,259 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,259 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,260 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,260 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,260 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,260 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,260 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,261 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,261 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,261 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,261 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,261 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-11-24 16:02:30,262 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-11-24 16:02:30,262 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-11-24 16:02:30,262 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Application 2024-11-24 16:02:30,262 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Application 2024-11-24 16:02:30,262 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,263 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,263 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,263 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,263 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,263 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,264 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-11-24 16:02:30,264 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-11-24 16:02:30,264 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-11-24 16:02:30,264 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:30,264 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:30,265 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-11-24 16:02:30,265 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-11-24 16:02:30,265 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-11-24 16:02:30,265 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-11-24 16:02:30,266 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-11-24 16:02:30,266 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-11-24 16:02:30,266 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Data 2024-11-24 16:02:30,266 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-11-24 16:02:30,266 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-11-24 16:02:30,267 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-11-24 16:02:30,267 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-11-24 16:02:30,267 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-11-24 16:02:30,267 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-11-24 16:02:30,267 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-11-24 16:02:30,268 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-11-24 16:02:30,268 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-11-24 16:02:30,268 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-11-24 16:02:30,268 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-11-24 16:02:30,268 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-11-24 16:02:30,269 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,269 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,269 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,269 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,269 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,270 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,270 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-11-24 16:02:30,270 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-11-24 16:02:30,270 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-11-24 16:02:30,270 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-11-24 16:02:30,271 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-11-24 16:02:30,271 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-11-24 16:02:30,271 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-11-24 16:02:30,271 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-11-24 16:02:30,271 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-11-24 16:02:30,272 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,272 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,272 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,272 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,272 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,273 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,273 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,273 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-11-24 16:02:30,273 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,273 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,274 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,274 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,274 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,274 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,275 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,275 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,275 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,275 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,275 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,276 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,276 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:30,276 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,276 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,276 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,277 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,277 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,277 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-11-24 16:02:30,277 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-11-24 16:02:30,277 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-11-24 16:02:30,278 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-11-24 16:02:30,278 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-11-24 16:02:30,278 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-11-24 16:02:30,278 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-11-24 16:02:30,278 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-11-24 16:02:30,279 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-11-24 16:02:30,279 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-11-24 16:02:30,279 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-11-24 16:02:30,279 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-11-24 16:02:30,279 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,279 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-11-24 16:02:30,279 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-11-24 16:02:30,280 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-11-24 16:02:30,280 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-11-24 16:02:30,280 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-11-24 16:02:30,280 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-11-24 16:02:30,280 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-11-24 16:02:30,281 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-11-24 16:02:30,281 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-11-24 16:02:30,281 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-11-24 16:02:30,281 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,281 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,282 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,282 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,282 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,282 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,282 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,283 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,283 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,283 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,283 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,283 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,284 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-11-24 16:02:30,284 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-11-24 16:02:30,284 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-11-24 16:02:30,284 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-11-24 16:02:30,284 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-11-24 16:02:30,285 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-11-24 16:02:30,285 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,285 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,286 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,286 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,286 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,286 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,287 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-11-24 16:02:30,287 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-11-24 16:02:30,287 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-11-24 16:02:30,287 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-11-24 16:02:30,287 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-11-24 16:02:30,287 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-11-24 16:02:30,288 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-11-24 16:02:30,288 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-11-24 16:02:30,288 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-11-24 16:02:30,288 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-11-24 16:02:30,289 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,289 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,289 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,289 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,289 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,290 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,290 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,290 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,290 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,290 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,291 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,291 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,291 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,291 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,291 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,292 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,292 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,292 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,292 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,292 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,293 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,293 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,293 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,293 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,293 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,294 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,294 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,294 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,294 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,295 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,295 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,295 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,295 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,295 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,296 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,297 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,297 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-11-24 16:02:30,297 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-11-24 16:02:30,297 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-11-24 16:02:30,297 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-11-24 16:02:30,298 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-11-24 16:02:30,298 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-11-24 16:02:30,298 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,298 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,298 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,299 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,299 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,299 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-11-24 16:02:30,299 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-11-24 16:02:30,299 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-11-24 16:02:30,300 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-11-24 16:02:30,300 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-11-24 16:02:30,301 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-11-24 16:02:30,301 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,301 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,301 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,301 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,302 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,302 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,302 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,302 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-11-24 16:02:30,303 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,303 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,303 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,303 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,303 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,304 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-11-24 16:02:30,304 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,304 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,304 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,304 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,305 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,305 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-11-24 16:02:30,305 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-11-24 16:02:30,305 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-11-24 16:02:30,305 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-11-24 16:02:30,306 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-11-24 16:02:30,306 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:30,306 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:30,306 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:30,307 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,307 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,307 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,307 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,307 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,307 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,308 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-24 16:02:30,308 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,308 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,308 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,308 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,309 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,309 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:30,309 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:30,309 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:30,309 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:30,310 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,310 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,310 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,310 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,311 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,311 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,311 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,311 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,311 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,312 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,312 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,312 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,312 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,312 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,313 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,313 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,313 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,313 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,313 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,314 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,314 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,314 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,314 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,314 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,315 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,315 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,315 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,315 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,316 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,316 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,316 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,316 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-11-24 16:02:30,316 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-11-24 16:02:30,317 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-11-24 16:02:30,317 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-11-24 16:02:30,317 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-11-24 16:02:30,317 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-11-24 16:02:30,317 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-11-24 16:02:30,318 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-11-24 16:02:30,318 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-11-24 16:02:30,318 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-11-24 16:02:30,318 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-11-24 16:02:30,318 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-11-24 16:02:30,319 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-11-24 16:02:30,319 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-11-24 16:02:30,319 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-11-24 16:02:30,319 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-11-24 16:02:30,319 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-11-24 16:02:30,320 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,320 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,320 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,320 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,320 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,321 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,321 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,321 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,321 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,322 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,323 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,323 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-11-24 16:02:30,323 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-11-24 16:02:30,323 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-11-24 16:02:30,323 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-11-24 16:02:30,324 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-11-24 16:02:30,324 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-11-24 16:02:30,324 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,324 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,325 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,326 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,326 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-11-24 16:02:30,326 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-11-24 16:02:30,326 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-11-24 16:02:30,326 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-11-24 16:02:30,327 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-11-24 16:02:30,327 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-11-24 16:02:30,327 root INFO creating build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,327 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,327 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,328 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,328 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,328 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,328 root INFO running egg_info 2024-11-24 16:02:30,329 root INFO writing biopython.egg-info/PKG-INFO 2024-11-24 16:02:30,330 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-11-24 16:02:30,330 root INFO writing requirements to biopython.egg-info/requires.txt 2024-11-24 16:02:30,330 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-11-24 16:02:30,341 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-11-24 16:02:30,352 root INFO reading manifest template 'MANIFEST.in' 2024-11-24 16:02:30,412 root WARNING warning: no previously-included files found matching 'Doc/_build/' 2024-11-24 16:02:30,415 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-11-24 16:02:30,417 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-11-24 16:02:30,420 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-11-24 16:02:30,422 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-11-24 16:02:30,424 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-11-24 16:02:30,429 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-11-24 16:02:30,429 root INFO adding license file 'LICENSE' 2024-11-24 16:02:30,429 root INFO adding license file 'LICENSE.rst' 2024-11-24 16:02:30,455 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-11-24 16:02:30,475 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,475 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,475 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,475 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,476 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,476 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,476 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,476 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,477 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,477 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,477 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,477 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,477 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,478 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,479 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,479 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,479 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,479 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,479 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,480 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,481 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,481 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,481 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,481 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,481 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,482 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-24 16:02:30,482 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:30,482 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:30,482 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:30,483 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,483 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,483 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,483 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,483 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,484 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,484 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,484 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,484 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,484 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,485 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,485 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,485 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,485 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,485 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,486 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,486 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,486 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,486 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,486 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,487 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,487 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,487 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,487 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,487 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,488 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,488 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,488 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,488 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,489 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,489 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,489 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,489 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,490 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,490 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,490 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,490 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,491 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,491 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,491 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,491 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,492 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,492 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,492 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,492 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,492 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,493 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,493 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,493 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,493 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,494 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,494 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,494 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,494 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,494 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,495 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,495 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,495 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,495 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,495 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,496 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,496 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,496 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,496 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,496 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,497 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,498 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,498 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,498 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,498 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,498 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,499 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,499 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,499 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,499 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,499 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,500 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,500 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,500 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,500 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,500 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,501 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,501 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,501 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,501 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,501 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,502 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,502 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,502 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,502 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,502 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,503 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,504 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,504 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,504 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,504 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,504 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,505 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,506 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,506 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,506 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,506 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,506 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,507 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,507 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,507 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,507 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,507 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,508 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,508 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,508 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,508 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,508 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,509 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,509 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,509 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,509 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,509 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,510 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,510 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,510 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,510 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,510 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,511 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,512 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,512 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,512 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,512 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,513 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,514 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,514 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,514 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,514 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,514 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,515 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,515 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,515 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,515 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,515 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,516 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,516 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,516 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,516 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,516 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,517 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,517 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,517 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,517 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,517 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,518 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,518 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,518 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,518 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,519 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,520 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,520 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,520 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,520 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,521 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,521 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,521 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,521 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,522 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,523 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,523 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,523 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,523 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,523 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,524 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,524 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,524 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,524 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,524 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,525 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,525 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,525 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,525 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,525 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,526 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,527 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,527 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,527 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,527 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,527 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,528 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,528 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,528 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,528 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,528 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,529 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,529 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,529 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,529 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,529 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,530 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,530 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,530 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,530 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,531 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,531 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,531 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,531 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,531 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,532 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,532 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,532 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,532 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,532 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,533 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,533 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,533 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,533 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,533 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,534 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,534 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,534 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,534 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,534 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,535 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,535 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,535 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,536 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,536 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,536 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,536 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,536 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,537 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,537 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,537 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,537 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,537 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,538 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,538 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,538 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,538 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,538 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,539 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,539 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,539 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,539 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,539 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,540 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,540 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,540 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,540 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,540 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,541 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,541 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,541 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-11-24 16:02:30,541 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-11-24 16:02:30,541 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-11-24 16:02:30,541 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-11-24 16:02:30,542 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-11-24 16:02:30,542 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:30,542 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:30,542 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,542 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,543 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:30,543 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:30,543 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-11-24 16:02:30,548 root INFO running build_ext 2024-11-24 16:02:30,549 root INFO building 'Bio.Align._codonaligner' extension 2024-11-24 16:02:30,550 root INFO creating build/temp.linux-x86_64-cpython-312 2024-11-24 16:02:30,550 root INFO creating build/temp.linux-x86_64-cpython-312/Bio 2024-11-24 16:02:30,550 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Align 2024-11-24 16:02:30,550 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o 2024-11-24 16:02:31,140 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:31,158 root INFO building 'Bio.Align._pairwisealigner' extension 2024-11-24 16:02:31,158 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-24 16:02:37,457 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:37,480 root INFO building 'Bio.Align._aligncore' extension 2024-11-24 16:02:37,481 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o 2024-11-24 16:02:37,757 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:37,773 root INFO building 'Bio.cpairwise2' extension 2024-11-24 16:02:37,774 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-24 16:02:38,135 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:38,153 root INFO building 'Bio.Nexus.cnexus' extension 2024-11-24 16:02:38,153 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Nexus 2024-11-24 16:02:38,154 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o 2024-11-24 16:02:38,312 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:38,329 root INFO building 'Bio.motifs._pwm' extension 2024-11-24 16:02:38,329 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/motifs 2024-11-24 16:02:38,330 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o 2024-11-24 16:02:38,504 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:38,520 root INFO building 'Bio.Cluster._cluster' extension 2024-11-24 16:02:38,521 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Cluster 2024-11-24 16:02:38,521 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o 2024-11-24 16:02:40,971 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o 2024-11-24 16:02:41,738 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:41,760 root INFO building 'Bio.PDB.ccealign' extension 2024-11-24 16:02:41,760 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/PDB 2024-11-24 16:02:41,760 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o 2024-11-24 16:02:42,093 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:42,111 root INFO building 'Bio.PDB.kdtrees' extension 2024-11-24 16:02:42,111 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o 2024-11-24 16:02:42,584 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:42,604 root INFO building 'Bio.PDB._bcif_helper' extension 2024-11-24 16:02:42,604 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o 2024-11-24 16:02:42,789 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:42,804 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-11-24 16:02:42,804 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/SeqIO 2024-11-24 16:02:42,804 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-11-24 16:02:43,028 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so 2024-11-24 16:02:43,053 root INFO installing to build/bdist.linux-x86_64/wheel 2024-11-24 16:02:43,053 root INFO running install 2024-11-24 16:02:43,075 root INFO running install_lib 2024-11-24 16:02:43,080 root INFO creating build/bdist.linux-x86_64 2024-11-24 16:02:43,080 root INFO creating build/bdist.linux-x86_64/wheel 2024-11-24 16:02:43,080 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,081 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,081 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,082 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,082 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,083 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,083 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-11-24 16:02:43,084 root INFO creating build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,084 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-11-24 16:02:43,084 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-11-24 16:02:43,085 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-11-24 16:02:43,085 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-11-24 16:02:43,086 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,086 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,086 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,087 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,087 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,088 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,088 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,088 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,089 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,089 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,090 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,090 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,090 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,091 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-11-24 16:02:43,091 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-11-24 16:02:43,091 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-11-24 16:02:43,092 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-11-24 16:02:43,092 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-11-24 16:02:43,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-11-24 16:02:43,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-11-24 16:02:43,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,094 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline 2024-11-24 16:02:43,094 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline 2024-11-24 16:02:43,094 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,095 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,095 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,095 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,096 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,096 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,096 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-11-24 16:02:43,097 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,097 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-11-24 16:02:43,097 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-11-24 16:02:43,098 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,098 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,098 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,099 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,100 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,100 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-11-24 16:02:43,101 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-11-24 16:02:43,101 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-11-24 16:02:43,102 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-11-24 16:02:43,102 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-11-24 16:02:43,102 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-11-24 16:02:43,103 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application 2024-11-24 16:02:43,103 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Application 2024-11-24 16:02:43,103 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,103 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,104 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,104 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-11-24 16:02:43,106 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,106 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,106 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,107 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,107 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,107 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,108 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-11-24 16:02:43,108 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-11-24 16:02:43,108 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-11-24 16:02:43,109 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-11-24 16:02:43,109 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-11-24 16:02:43,110 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-11-24 16:02:43,110 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,112 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,112 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,112 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,115 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,115 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,115 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,116 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,116 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,116 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,118 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,118 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-11-24 16:02:43,118 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-11-24 16:02:43,119 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-11-24 16:02:43,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-11-24 16:02:43,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-11-24 16:02:43,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-11-24 16:02:43,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-11-24 16:02:43,120 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-11-24 16:02:43,120 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,120 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,124 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,124 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,124 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,124 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,126 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,126 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,126 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,126 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-11-24 16:02:43,183 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-11-24 16:02:43,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-11-24 16:02:43,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-11-24 16:02:43,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-11-24 16:02:43,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-11-24 16:02:43,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-11-24 16:02:43,184 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-11-24 16:02:43,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-11-24 16:02:43,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,185 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,189 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-11-24 16:02:43,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,193 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-11-24 16:02:43,193 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-11-24 16:02:43,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-11-24 16:02:43,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-11-24 16:02:43,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,200 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-11-24 16:02:43,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,202 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-11-24 16:02:43,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-11-24 16:02:43,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-11-24 16:02:43,202 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-11-24 16:02:43,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-11-24 16:02:43,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-11-24 16:02:43,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-11-24 16:02:43,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-11-24 16:02:43,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-11-24 16:02:43,204 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass 2024-11-24 16:02:43,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass 2024-11-24 16:02:43,204 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-11-24 16:02:43,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-11-24 16:02:43,204 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-11-24 16:02:43,206 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-11-24 16:02:43,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,209 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo 2024-11-24 16:02:43,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-11-24 16:02:43,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-11-24 16:02:43,209 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-11-24 16:02:43,211 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,212 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-11-24 16:02:43,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-11-24 16:02:43,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-11-24 16:02:43,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-11-24 16:02:43,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-11-24 16:02:43,222 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-11-24 16:02:43,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-11-24 16:02:43,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-11-24 16:02:43,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-11-24 16:02:43,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-11-24 16:02:43,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,223 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-11-24 16:02:43,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-11-24 16:02:43,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-11-24 16:02:43,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,224 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-11-24 16:02:43,224 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-11-24 16:02:43,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-11-24 16:02:43,225 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR 2024-11-24 16:02:43,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-11-24 16:02:43,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-11-24 16:02:43,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-11-24 16:02:43,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,226 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-11-24 16:02:43,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-11-24 16:02:43,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-11-24 16:02:43,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-11-24 16:02:43,227 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy 2024-11-24 16:02:43,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-11-24 16:02:43,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-11-24 16:02:43,227 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-11-24 16:02:43,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-11-24 16:02:43,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-11-24 16:02:43,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-11-24 16:02:43,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-11-24 16:02:43,228 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,231 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-11-24 16:02:43,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-11-24 16:02:43,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-11-24 16:02:43,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-11-24 16:02:43,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-11-24 16:02:43,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,232 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-11-24 16:02:43,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-11-24 16:02:43,234 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-11-24 16:02:43,235 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data 2024-11-24 16:02:43,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-11-24 16:02:43,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-11-24 16:02:43,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-11-24 16:02:43,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-11-24 16:02:43,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio 2024-11-24 16:02:43,237 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,237 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-11-24 16:02:43,238 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-11-24 16:02:43,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,240 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-11-24 16:02:43,241 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:43,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:43,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-24 16:02:43,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,241 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-11-24 16:02:43,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-11-24 16:02:43,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-11-24 16:02:43,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-11-24 16:02:43,242 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:43,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:43,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-11-24 16:02:43,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-11-24 16:02:43,243 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-11-24 16:02:43,243 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-11-24 16:02:43,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-11-24 16:02:43,243 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-11-24 16:02:43,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-11-24 16:02:43,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-11-24 16:02:43,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-11-24 16:02:43,244 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-11-24 16:02:43,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-11-24 16:02:43,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-11-24 16:02:43,244 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-11-24 16:02:43,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-11-24 16:02:43,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-11-24 16:02:43,245 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-11-24 16:02:43,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-11-24 16:02:43,245 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-11-24 16:02:43,247 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-11-24 16:02:43,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-11-24 16:02:43,248 root INFO running install_egg_info 2024-11-24 16:02:43,250 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.84-py3.12.egg-info 2024-11-24 16:02:43,251 root INFO running install_scripts 2024-11-24 16:02:43,256 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.84.dist-info/WHEEL 2024-11-24 16:02:43,257 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.84/.dist/.tmp-3hkjkuyc/biopython-1.84-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it 2024-11-24 16:02:43,257 wheel INFO adding 'Bio/File.py' 2024-11-24 16:02:43,257 wheel INFO adding 'Bio/LogisticRegression.py' 2024-11-24 16:02:43,258 wheel INFO adding 'Bio/MarkovModel.py' 2024-11-24 16:02:43,258 wheel INFO adding 'Bio/MaxEntropy.py' 2024-11-24 16:02:43,258 wheel INFO adding 'Bio/NaiveBayes.py' 2024-11-24 16:02:43,259 wheel INFO adding 'Bio/Seq.py' 2024-11-24 16:02:43,259 wheel INFO adding 'Bio/SeqFeature.py' 2024-11-24 16:02:43,260 wheel INFO adding 'Bio/SeqRecord.py' 2024-11-24 16:02:43,260 wheel INFO adding 'Bio/__init__.py' 2024-11-24 16:02:43,260 wheel INFO adding 'Bio/_utils.py' 2024-11-24 16:02:43,260 wheel INFO adding 'Bio/bgzf.py' 2024-11-24 16:02:43,261 wheel INFO adding 'Bio/cpairwise2.cpython-312-x86_64-linux-musl.so' 2024-11-24 16:02:43,261 wheel INFO adding 'Bio/cpairwise2module.c' 2024-11-24 16:02:43,261 wheel INFO adding 'Bio/kNN.py' 2024-11-24 16:02:43,262 wheel INFO adding 'Bio/pairwise2.py' 2024-11-24 16:02:43,262 wheel INFO adding 'Bio/py.typed' 2024-11-24 16:02:43,262 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-11-24 16:02:43,262 wheel 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'biopython-1.84.dist-info/top_level.txt' 2024-11-24 16:02:43,425 wheel INFO adding 'biopython-1.84.dist-info/RECORD' 2024-11-24 16:02:43,427 root INFO removing build/bdist.linux-x86_64/wheel 2024-11-24 16:02:43,440 gpep517 INFO The backend produced .dist/biopython-1.84-cp312-cp312-linux_x86_64.whl biopython-1.84-cp312-cp312-linux_x86_64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' 'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 6.4 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.84-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-x86_64.so.1 >>> py3-biopython*: Package size: 11.1 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.84-r0.apk >>> py3-biopython: Build complete at Sun, 24 Nov 2024 16:02:46 +0000 elapsed time 0h 0m 20s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/31) Purging .makedepends-py3-biopython (20241124.160227) (2/31) Purging py3-numpy-pyc (2.1.3-r0) (3/31) Purging py3-numpy (2.1.3-r0) (4/31) Purging openblas (0.3.28-r0) (5/31) Purging py3-gpep517-pyc (16-r0) (6/31) Purging py3-gpep517 (16-r0) (7/31) Purging py3-installer-pyc (0.7.0-r2) (8/31) Purging py3-installer (0.7.0-r2) (9/31) Purging py3-setuptools-pyc (70.3.0-r0) (10/31) Purging py3-setuptools (70.3.0-r0) (11/31) Purging py3-wheel-pyc (0.43.0-r0) (12/31) Purging py3-wheel (0.43.0-r0) (13/31) Purging py3-packaging-pyc (24.2-r0) (14/31) Purging py3-packaging (24.2-r0) (15/31) Purging py3-parsing-pyc (3.1.4-r0) (16/31) Purging py3-parsing (3.1.4-r0) (17/31) Purging py3-numpy-dev (2.1.3-r0) (18/31) Purging python3-dev (3.12.7-r1) (19/31) Purging python3-pyc (3.12.7-r1) (20/31) Purging python3-pycache-pyc0 (3.12.7-r1) (21/31) Purging pyc (3.12.7-r1) (22/31) Purging python3 (3.12.7-r1) (23/31) Purging gdbm (1.24-r0) (24/31) Purging libbz2 (1.0.8-r6) (25/31) Purging libffi (3.4.6-r0) (26/31) Purging libgfortran (14.2.0-r4) (27/31) Purging libpanelw (6.5_p20241006-r3) (28/31) Purging libquadmath (14.2.0-r4) (29/31) Purging mpdecimal (4.0.0-r0) (30/31) Purging sqlite-libs (3.47.0-r0) (31/31) Purging xz-libs (5.6.3-r0) Executing busybox-1.37.0-r8.trigger OK: 395 MiB in 101 packages >>> py3-biopython: Updating the community/x86_64 repository index... >>> py3-biopython: Signing the index...