>>> py3-biopython: Building community/py3-biopython 1.87-r0 (using abuild 3.17.0_rc2-r0) started Thu, 28 May 2026 10:18:29 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r1) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.3-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20260516-r0) ( 7/31) Installing readline (8.3.3-r1) ( 8/31) Installing sqlite-libs (3.53.1-r0) ( 9/31) Installing python3 (3.14.3-r0) (10/31) Installing python3-pycache-pyc0 (3.14.3-r0) (11/31) Installing pyc (3.14.3-r0) (12/31) Installing py3-numpy-pyc (2.4.6-r0) (13/31) Installing python3-pyc (3.14.3-r0) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.4.6-r0) (16/31) Installing py3-numpy-tests (2.4.6-r0) (17/31) Installing py3-installer (1.0.0-r0) (18/31) Installing py3-installer-pyc (1.0.0-r0) (19/31) Installing py3-gpep517 (19-r2) (20/31) Installing py3-gpep517-pyc (19-r2) (21/31) Installing py3-parsing (3.3.2-r1) (22/31) Installing py3-parsing-pyc (3.3.2-r1) (23/31) Installing py3-packaging (26.2-r0) (24/31) Installing py3-packaging-pyc (26.2-r0) (25/31) Installing py3-setuptools (82.0.1-r1) (26/31) Installing py3-setuptools-pyc (82.0.1-r1) (27/31) Installing py3-wheel (0.47.0-r0) (28/31) Installing py3-wheel-pyc (0.47.0-r0) (29/31) Installing py3-numpy-dev (2.4.6-r0) (30/31) Installing python3-dev (3.14.3-r0) (31/31) Installing .makedepends-py3-biopython (20260528.101834) Executing busybox-1.37.0-r31.trigger OK: 1035.1 MiB in 135 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.24/biopython-1.87.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.24/biopython-1.87.tar.gz.part' biopython-1.87.tar.g 32% |********** | 6223k 0:00:02 ETA biopython-1.87.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/v3.24/biopython-1.87.tar.gz.part' saved /var/cache/distfiles/v3.24/biopython-1.87.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.24/biopython-1.87.tar.gz /var/cache/distfiles/v3.24/biopython-1.87.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/v3.24/biopython-1.87.tar.gz... 2026-05-28 10:18:45,275 gpep517 INFO Building wheel via backend setuptools.build_meta /usr/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases. config = read_configuration(filepath, True, ignore_option_errors, dist) 2026-05-28 10:18:45,485 root INFO running bdist_wheel 2026-05-28 10:18:45,527 root INFO running build 2026-05-28 10:18:45,527 root INFO running build_py 2026-05-28 10:18:45,537 root INFO creating build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,539 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,541 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,544 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,546 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,547 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,550 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,551 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,553 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:45,555 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-28 10:18:45,556 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-28 10:18:45,557 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-28 10:18:45,559 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,560 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,562 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,564 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,565 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,567 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,569 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,571 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,572 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,573 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,575 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,576 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,578 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,579 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,581 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,582 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,584 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,585 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,586 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,588 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,589 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,591 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,592 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,593 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,595 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:45,597 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-28 10:18:45,597 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-28 10:18:45,600 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,601 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,602 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,603 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,605 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,606 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,608 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,609 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,611 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,612 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,614 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,615 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-28 10:18:45,617 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Alphabet 2026-05-28 10:18:45,617 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Alphabet 2026-05-28 10:18:45,619 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,620 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,621 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,623 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,625 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,626 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-28 10:18:45,628 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/CAPS 2026-05-28 10:18:45,629 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/CAPS 2026-05-28 10:18:45,630 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:18:45,631 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:18:45,633 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-28 10:18:45,634 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-28 10:18:45,635 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-28 10:18:45,637 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-28 10:18:45,639 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Compass 2026-05-28 10:18:45,640 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Compass 2026-05-28 10:18:45,642 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-28 10:18:45,642 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-28 10:18:45,644 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-28 10:18:45,645 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-28 10:18:45,647 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-28 10:18:45,649 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-28 10:18:45,649 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-28 10:18:45,651 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-28 10:18:45,652 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-28 10:18:45,654 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-28 10:18:45,654 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-28 10:18:45,656 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-28 10:18:45,660 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,661 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,662 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,664 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,665 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,666 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,668 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-28 10:18:45,669 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-28 10:18:45,670 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-28 10:18:45,672 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-28 10:18:45,674 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-28 10:18:45,676 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-28 10:18:45,677 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-28 10:18:45,678 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-28 10:18:45,679 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-28 10:18:45,681 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,682 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,683 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,684 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,686 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,687 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,689 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,690 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-28 10:18:45,692 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,693 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,694 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,695 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,697 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,698 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,699 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,701 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,703 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,705 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,706 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,707 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,709 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-28 10:18:45,710 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/HMM 2026-05-28 10:18:45,711 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/HMM 2026-05-28 10:18:45,713 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-28 10:18:45,714 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-28 10:18:45,715 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-28 10:18:45,716 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound 2026-05-28 10:18:45,717 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound 2026-05-28 10:18:45,719 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme 2026-05-28 10:18:45,720 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme 2026-05-28 10:18:45,721 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene 2026-05-28 10:18:45,722 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene 2026-05-28 10:18:45,724 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map 2026-05-28 10:18:45,724 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map 2026-05-28 10:18:45,726 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-28 10:18:45,727 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-28 10:18:45,728 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-28 10:18:45,729 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-28 10:18:45,731 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Medline 2026-05-28 10:18:45,732 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Medline 2026-05-28 10:18:45,734 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,735 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,736 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,737 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,739 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,740 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,741 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,743 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,744 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,745 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,747 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,748 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:45,750 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-28 10:18:45,751 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-28 10:18:45,752 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-28 10:18:45,754 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,755 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,756 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,758 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,759 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,761 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:45,763 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-28 10:18:45,763 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-28 10:18:45,765 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-28 10:18:45,766 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-28 10:18:45,768 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway 2026-05-28 10:18:45,769 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway 2026-05-28 10:18:45,770 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-28 10:18:45,771 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-28 10:18:45,772 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-28 10:18:45,774 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-28 10:18:45,776 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,777 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,779 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,780 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,781 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,783 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,784 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,785 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,787 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,788 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,789 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,791 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,792 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,794 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,795 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,797 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,798 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,799 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,801 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,802 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,804 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,805 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,807 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,808 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,810 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,811 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,813 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,814 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,815 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,817 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,818 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,820 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,821 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,823 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,824 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,826 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,827 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,828 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,831 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,833 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,834 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,835 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:45,837 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-28 10:18:45,838 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-28 10:18:45,839 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-28 10:18:45,841 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-28 10:18:45,842 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-28 10:18:45,843 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-28 10:18:45,845 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-28 10:18:45,846 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-28 10:18:45,848 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen 2026-05-28 10:18:45,849 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen 2026-05-28 10:18:45,850 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-28 10:18:45,851 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-28 10:18:45,852 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-28 10:18:45,854 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-28 10:18:45,855 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-28 10:18:45,856 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-28 10:18:45,858 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-28 10:18:45,859 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-28 10:18:45,864 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-28 10:18:45,866 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,867 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,868 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,870 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,871 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,872 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,874 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,875 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-28 10:18:45,876 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,877 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,879 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,880 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,882 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,883 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-28 10:18:45,885 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,886 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,887 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,888 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,890 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,891 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-28 10:18:45,893 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-28 10:18:45,894 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-28 10:18:45,895 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-28 10:18:45,897 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-28 10:18:45,899 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-28 10:18:45,900 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-28 10:18:45,901 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-28 10:18:45,903 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,903 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,905 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,906 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,908 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,909 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,911 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-28 10:18:45,912 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-28 10:18:45,913 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-28 10:18:45,914 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-28 10:18:45,916 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-28 10:18:45,917 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-28 10:18:45,919 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,920 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,921 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,923 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,924 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,926 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-28 10:18:45,927 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-28 10:18:45,928 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-28 10:18:45,930 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-28 10:18:45,932 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,933 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,934 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,936 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,937 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,939 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,940 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,942 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,943 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,945 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,947 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,948 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,950 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,951 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,953 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,954 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,956 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,957 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,959 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,960 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,961 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,963 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,964 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,966 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:45,968 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,969 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,970 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,971 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,973 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,975 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,976 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,977 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-28 10:18:45,979 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-28 10:18:45,980 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-28 10:18:45,981 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-28 10:18:45,982 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-28 10:18:45,984 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer 2026-05-28 10:18:45,985 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer 2026-05-28 10:18:45,987 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-28 10:18:45,987 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-28 10:18:45,989 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-28 10:18:45,991 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/TogoWS 2026-05-28 10:18:45,991 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/TogoWS 2026-05-28 10:18:45,993 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:45,994 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:45,996 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:45,997 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:45,999 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,000 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,002 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,003 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,005 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,006 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,007 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,009 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,010 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,012 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,014 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,015 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,017 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-28 10:18:46,019 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,019 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,021 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,022 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,023 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,025 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,026 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,028 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,029 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,030 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-28 10:18:46,032 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniGene 2026-05-28 10:18:46,033 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniGene 2026-05-28 10:18:46,035 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-28 10:18:46,035 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-28 10:18:46,037 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-28 10:18:46,038 root INFO creating build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,039 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,041 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,042 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,043 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,045 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:46,047 root INFO running egg_info 2026-05-28 10:18:46,056 root INFO writing biopython.egg-info/PKG-INFO 2026-05-28 10:18:46,058 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-05-28 10:18:46,060 root INFO writing requirements to biopython.egg-info/requires.txt 2026-05-28 10:18:46,061 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-05-28 10:18:46,124 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-05-28 10:18:46,285 root INFO reading manifest template 'MANIFEST.in' 2026-05-28 10:18:46,607 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-05-28 10:18:46,625 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-05-28 10:18:46,635 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-05-28 10:18:46,645 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-05-28 10:18:46,655 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-05-28 10:18:46,664 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-05-28 10:18:46,688 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-05-28 10:18:46,688 root INFO adding license file 'LICENSE.rst' 2026-05-28 10:18:46,813 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' 2026-05-28 10:18:46,895 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:46,897 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-28 10:18:46,898 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:46,900 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:46,902 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:46,903 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:46,907 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:46,908 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-28 10:18:46,910 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-28 10:18:46,911 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,912 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,913 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,915 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,916 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,917 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,919 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,920 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,921 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,923 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,924 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,925 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,927 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,928 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,929 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,931 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,932 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,933 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,935 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,936 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,937 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,939 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,940 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,942 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,943 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,944 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,946 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,947 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,948 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,950 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,951 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-28 10:18:46,953 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:18:46,956 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:18:46,957 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:18:46,959 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,960 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,961 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,963 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,964 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,966 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,967 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,969 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,970 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,972 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,973 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,975 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,976 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,978 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,979 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,980 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,982 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,983 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,984 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,986 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,987 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,988 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,990 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,992 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,993 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,995 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,996 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:46,998 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,000 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,002 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,004 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,005 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,007 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,010 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,012 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,014 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,016 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,017 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,019 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,021 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,022 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,024 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,026 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,027 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,029 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,031 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,032 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,034 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,035 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,037 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,039 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,040 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,042 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,044 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,045 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,047 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,048 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,049 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,051 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,052 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,054 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,055 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,057 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,058 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,059 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,061 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,062 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,063 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,065 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,066 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,067 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,069 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,070 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,072 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,073 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,074 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,076 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,077 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,079 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,080 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,082 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,083 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,084 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,086 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,087 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,089 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,090 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,091 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,093 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,094 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,095 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,096 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,098 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,099 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,101 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,102 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,104 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,105 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,107 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,108 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,109 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,110 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,112 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,113 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,115 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,116 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,117 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,119 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,120 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,121 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,123 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,124 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,126 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,127 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,129 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,130 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,131 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,133 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,134 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,135 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,137 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,138 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,139 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,141 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,142 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,143 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,145 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,146 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,147 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,149 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,150 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,152 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,153 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,154 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,156 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,157 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,159 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,160 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,161 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,163 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,164 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,165 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,167 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,168 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,169 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,171 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,172 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,174 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,175 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,177 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,178 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,180 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,181 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,182 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,184 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,185 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,186 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,188 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,190 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,191 root INFO 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,224 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,226 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,227 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,229 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,231 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,233 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,234 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,236 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,238 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,239 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,240 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,242 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,243 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,244 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,245 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,247 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,248 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,249 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,251 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,252 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,253 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,255 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,256 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,257 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,259 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,260 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,262 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,263 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,265 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,266 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,268 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,269 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,270 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,272 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,273 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,274 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,276 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,277 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,278 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,280 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,281 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,283 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,284 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,285 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,287 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,288 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,290 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,291 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,293 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,295 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,296 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,298 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,299 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,301 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,302 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,304 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,306 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,307 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,309 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,310 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,312 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,314 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 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Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,326 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,328 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,329 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,331 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,332 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,334 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,335 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,337 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,338 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,340 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,341 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,342 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,344 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,345 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,348 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,350 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,351 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,353 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,354 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,356 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,357 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,358 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,360 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,361 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,362 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,364 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,365 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,366 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,368 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,369 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,371 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,372 root INFO copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,374 root INFO copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,375 root INFO copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,377 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,378 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,380 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,381 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,382 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,384 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-28 10:18:47,385 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-28 10:18:47,386 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-28 10:18:47,387 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-28 10:18:47,389 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-28 10:18:47,390 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:18:47,392 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:18:47,393 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:47,394 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:47,396 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:18:47,398 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:18:47,399 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-28 10:18:47,423 root INFO running build_ext 2026-05-28 10:18:47,432 root INFO building 'Bio.Align._aligncore' extension 2026-05-28 10:18:47,437 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align 2026-05-28 10:18:47,439 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o 2026-05-28 10:18:48,680 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so 2026-05-28 10:18:48,719 root INFO building 'Bio.Align._alignmentcounts' extension 2026-05-28 10:18:48,720 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o 2026-05-28 10:18:52,440 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so 2026-05-28 10:18:52,484 root INFO building 'Bio.Align._codonaligner' extension 2026-05-28 10:18:52,485 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o 2026-05-28 10:18:55,239 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so 2026-05-28 10:18:55,283 root INFO building 'Bio.Align._pairwisealigner' extension 2026-05-28 10:18:55,284 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o 2026-05-28 10:19:30,939 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:31,035 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-05-28 10:19:31,036 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-28 10:19:31,037 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o 2026-05-28 10:19:31,937 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:31,975 root INFO building 'Bio.cpairwise2' extension 2026-05-28 10:19:31,976 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o 2026-05-28 10:19:33,494 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:33,535 root INFO building 'Bio.Nexus.cnexus' extension 2026-05-28 10:19:33,536 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Nexus 2026-05-28 10:19:33,537 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o 2026-05-28 10:19:34,177 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:34,215 root INFO building 'Bio.motifs._pwm' extension 2026-05-28 10:19:34,216 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/motifs 2026-05-28 10:19:34,216 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o 2026-05-28 10:19:34,951 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:34,990 root INFO building 'Bio.Cluster._cluster' extension 2026-05-28 10:19:34,991 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Cluster 2026-05-28 10:19:34,992 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-05-28 10:19:46,502 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-05-28 10:19:49,899 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:49,954 root INFO building 'Bio.PDB.ccealign' extension 2026-05-28 10:19:49,955 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/PDB 2026-05-28 10:19:49,956 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o 2026-05-28 10:19:51,604 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:51,644 root INFO building 'Bio.PDB.kdtrees' extension 2026-05-28 10:19:51,645 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o 2026-05-28 10:19:53,707 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:53,748 root INFO building 'Bio.PDB._bcif_helper' extension 2026-05-28 10:19:53,749 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o 2026-05-28 10:19:54,490 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:54,528 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-05-28 10:19:54,529 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-28 10:19:54,529 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o 2026-05-28 10:19:55,474 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so 2026-05-28 10:19:55,529 root INFO installing to build/bdist.linux-riscv64/wheel 2026-05-28 10:19:55,529 root INFO running install 2026-05-28 10:19:55,570 root INFO running install_lib 2026-05-28 10:19:55,579 root INFO creating build/bdist.linux-riscv64/wheel 2026-05-28 10:19:55,580 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2026-05-28 10:19:55,581 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,583 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,584 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,585 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,586 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,588 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-28 10:19:55,590 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2026-05-28 10:19:55,591 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2026-05-28 10:19:55,592 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2026-05-28 10:19:55,593 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2026-05-28 10:19:55,595 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,597 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2026-05-28 10:19:55,597 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Medline 2026-05-28 10:19:55,599 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2026-05-28 10:19:55,600 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-28 10:19:55,601 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-28 10:19:55,604 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-28 10:19:55,605 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-28 10:19:55,607 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2026-05-28 10:19:55,607 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-28 10:19:55,609 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-28 10:19:55,610 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-28 10:19:55,612 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-28 10:19:55,613 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2026-05-28 10:19:55,614 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,616 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,617 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,618 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,620 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,621 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,622 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,624 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,625 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,627 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,628 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-28 10:19:55,630 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2026-05-28 10:19:55,631 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,632 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,633 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,634 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,636 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,637 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,639 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-28 10:19:55,640 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,641 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,642 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,644 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,645 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,646 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,648 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,649 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,651 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,653 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,654 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,655 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,657 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-28 10:19:55,658 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2026-05-28 10:19:55,659 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,661 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,662 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,664 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,666 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2026-05-28 10:19:55,667 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-28 10:19:55,668 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-28 10:19:55,670 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,671 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,672 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,673 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,674 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,675 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,677 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,678 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,679 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,680 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,681 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,683 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,684 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,685 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,686 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,687 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,689 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,690 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,691 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,692 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,693 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,695 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,696 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,697 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,698 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,699 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,701 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,702 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,703 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,705 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,706 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-28 10:19:55,707 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-28 10:19:55,708 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-28 10:19:55,710 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,711 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,712 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,715 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,717 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,718 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,721 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,723 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,724 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,726 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,727 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,729 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,730 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,731 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,733 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,734 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,735 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,737 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,738 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,739 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,741 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,743 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,744 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,746 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,748 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,750 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,751 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,753 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,754 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-28 10:19:55,756 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,757 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,759 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2026-05-28 10:19:55,760 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-28 10:19:55,762 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-28 10:19:55,763 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-28 10:19:55,764 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2026-05-28 10:19:55,765 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SVDSuperimposer 2026-05-28 10:19:55,767 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,768 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,769 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,771 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,773 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2026-05-28 10:19:55,774 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,775 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,777 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,778 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,780 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,781 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,782 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-28 10:19:55,784 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2026-05-28 10:19:55,785 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-28 10:19:55,786 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2026-05-28 10:19:55,787 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2026-05-28 10:19:55,789 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2026-05-28 10:19:55,790 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-28 10:19:55,792 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,793 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,794 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,795 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,797 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,798 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,800 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-28 10:19:55,801 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2026-05-28 10:19:55,802 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-28 10:19:55,803 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-28 10:19:55,805 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-28 10:19:55,807 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2026-05-28 10:19:55,807 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2026-05-28 10:19:55,809 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2026-05-28 10:19:55,810 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2026-05-28 10:19:55,811 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-28 10:19:55,812 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-28 10:19:55,814 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-28 10:19:55,815 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-28 10:19:55,817 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-28 10:19:55,818 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,819 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,820 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,822 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,823 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,825 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-28 10:19:55,826 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-28 10:19:55,827 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-28 10:19:55,829 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-28 10:19:55,830 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InfernalIO 2026-05-28 10:19:55,831 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-28 10:19:55,832 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-28 10:19:55,834 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-28 10:19:55,835 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-28 10:19:55,837 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2026-05-28 10:19:55,837 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-28 10:19:55,839 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-28 10:19:55,840 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-28 10:19:55,842 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-28 10:19:55,844 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-28 10:19:55,846 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2026-05-28 10:19:55,847 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2026-05-28 10:19:55,848 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2026-05-28 10:19:55,849 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2026-05-28 10:19:55,850 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2026-05-28 10:19:55,852 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2026-05-28 10:19:55,853 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/File.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,854 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/py.typed -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:55,856 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2026-05-28 10:19:55,857 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,858 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,859 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,860 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,862 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,863 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,864 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-28 10:19:55,866 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2026-05-28 10:19:55,866 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniGene 2026-05-28 10:19:55,868 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2026-05-28 10:19:55,869 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,870 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,872 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,873 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2026-05-28 10:19:55,874 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2026-05-28 10:19:55,876 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2026-05-28 10:19:55,877 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,879 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,880 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,881 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,883 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,884 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,885 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,887 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,888 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,889 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-28 10:19:55,891 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2026-05-28 10:19:55,892 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-28 10:19:55,893 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-28 10:19:55,894 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-28 10:19:55,896 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2026-05-28 10:19:55,896 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-28 10:19:55,898 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-28 10:19:55,899 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-28 10:19:55,904 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-28 10:19:55,907 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2026-05-28 10:19:55,908 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2026-05-28 10:19:55,909 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2026-05-28 10:19:55,910 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-28 10:19:55,911 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-28 10:19:55,913 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-28 10:19:55,915 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2026-05-28 10:19:55,917 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2026-05-28 10:19:55,917 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Enzyme 2026-05-28 10:19:55,919 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2026-05-28 10:19:55,920 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Gene 2026-05-28 10:19:55,922 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2026-05-28 10:19:55,923 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Map 2026-05-28 10:19:55,924 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2026-05-28 10:19:55,925 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Compound 2026-05-28 10:19:55,927 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2026-05-28 10:19:55,928 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-28 10:19:55,929 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-28 10:19:55,931 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-28 10:19:55,932 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2026-05-28 10:19:55,933 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,935 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,936 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,938 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,939 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,941 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,942 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2026-05-28 10:19:55,943 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,944 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,946 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,947 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,948 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,950 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,951 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,952 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,954 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-28 10:19:55,955 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,956 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,958 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,959 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,961 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,962 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,963 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,965 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,966 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,968 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-28 10:19:55,969 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2026-05-28 10:19:55,970 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-28 10:19:55,972 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-28 10:19:55,973 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-28 10:19:55,975 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2026-05-28 10:19:55,976 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2026-05-28 10:19:55,978 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2026-05-28 10:19:55,978 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/TogoWS 2026-05-28 10:19:55,980 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2026-05-28 10:19:55,981 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,982 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,984 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,985 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,987 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,988 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,989 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-28 10:19:55,991 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2026-05-28 10:19:55,992 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-28 10:19:55,994 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-28 10:19:55,995 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-28 10:19:55,997 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-28 10:19:55,999 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-28 10:19:56,001 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2026-05-28 10:19:56,002 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Alphabet 2026-05-28 10:19:56,004 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2026-05-28 10:19:56,004 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2026-05-28 10:19:56,006 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2026-05-28 10:19:56,007 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2026-05-28 10:19:56,008 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,009 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,011 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,012 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,013 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,015 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-28 10:19:56,016 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2026-05-28 10:19:56,017 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,019 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,020 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,022 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,023 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,025 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,026 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,028 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,029 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,031 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,033 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,034 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,035 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,037 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,039 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,040 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,041 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,043 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,044 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,046 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,047 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,048 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,050 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,051 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,053 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-28 10:19:56,054 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2026-05-28 10:19:56,055 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Compass 2026-05-28 10:19:56,057 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2026-05-28 10:19:56,058 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen 2026-05-28 10:19:56,059 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2026-05-28 10:19:56,060 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-28 10:19:56,061 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-28 10:19:56,063 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-28 10:19:56,064 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2026-05-28 10:19:56,065 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2026-05-28 10:19:56,067 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2026-05-28 10:19:56,069 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2026-05-28 10:19:56,069 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-28 10:19:56,071 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-28 10:19:56,072 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-28 10:19:56,074 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2026-05-28 10:19:56,075 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,076 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,078 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,079 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,080 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,082 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,083 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,084 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,085 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,087 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,088 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,090 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,091 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,092 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,095 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,096 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,098 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,099 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,101 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,103 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,104 root INFO 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,227 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,228 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,229 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,230 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,232 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,233 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,234 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,235 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,237 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,238 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,240 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,241 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,243 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,244 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,245 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,247 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,248 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,249 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,251 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,252 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,254 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,255 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,256 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,258 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,259 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,260 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,261 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,263 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,264 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,266 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,267 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,269 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,270 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,271 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,273 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,274 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,276 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,277 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,278 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,280 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,281 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,282 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,284 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,285 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,286 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,288 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,289 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,290 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,291 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,293 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,294 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,295 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,296 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,298 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,299 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,301 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,302 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,303 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,305 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,306 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,308 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,309 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,310 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,311 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,313 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,314 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,315 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,317 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,318 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,320 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,321 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,322 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,323 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,325 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,326 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,327 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,329 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,330 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,332 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,334 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,336 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,338 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,339 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,340 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,342 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,343 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,344 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,346 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,347 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,348 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,349 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,351 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,352 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,354 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,355 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,356 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,357 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,359 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,360 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,362 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,363 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,365 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,366 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,368 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,369 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,370 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,371 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,373 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,374 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,375 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,377 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,378 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,380 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,381 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,382 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,384 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,386 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,387 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,389 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,390 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,391 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,393 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,394 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,395 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,396 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,398 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,399 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,400 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,401 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,402 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,404 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,405 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,407 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,408 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,410 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,411 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,412 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,414 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,415 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,416 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,418 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,419 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,420 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,422 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,423 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,425 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,426 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,428 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,429 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,430 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,432 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,433 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,435 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,436 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,438 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,439 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,440 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,441 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,443 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,445 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,446 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,447 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,448 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,450 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,451 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,452 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,454 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,455 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,457 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,458 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,460 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,461 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,462 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,463 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,465 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,466 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,467 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,469 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,470 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,472 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,473 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-28 10:19:56,475 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:56,476 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2026-05-28 10:19:56,477 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway 2026-05-28 10:19:56,479 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2026-05-28 10:19:56,479 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-28 10:19:56,481 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-28 10:19:56,482 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-28 10:19:56,483 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-28 10:19:56,486 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2026-05-28 10:19:56,487 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,488 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,489 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,490 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,492 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,493 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,495 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,496 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,497 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,499 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,500 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,501 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,503 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,504 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,505 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,507 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,508 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,510 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,511 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,512 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,514 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,515 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,516 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,518 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,519 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,521 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,522 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,524 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,525 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,526 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,527 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,529 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,530 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,531 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,533 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,535 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,536 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,537 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,539 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,540 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,541 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,543 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,546 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,547 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,549 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,550 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,552 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-28 10:19:56,553 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2026-05-28 10:19:56,554 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2026-05-28 10:19:56,555 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2026-05-28 10:19:56,557 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2026-05-28 10:19:56,558 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2026-05-28 10:19:56,559 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/CAPS 2026-05-28 10:19:56,560 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2026-05-28 10:19:56,561 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2026-05-28 10:19:56,563 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2026-05-28 10:19:56,564 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2026-05-28 10:19:56,565 root INFO running install_egg_info 2026-05-28 10:19:56,575 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/./biopython-1.87-py3.14.egg-info 2026-05-28 10:19:56,582 root INFO running install_scripts 2026-05-28 10:19:56,620 root INFO creating build/bdist.linux-riscv64/wheel/biopython-1.87.dist-info/WHEEL 2026-05-28 10:19:56,623 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.87/.dist/.tmp-b98vrfh2/biopython-1.87-cp314-cp314-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2026-05-28 10:19:56,625 wheel INFO adding 'Bio/File.py' 2026-05-28 10:19:56,628 wheel INFO adding 'Bio/Seq.py' 2026-05-28 10:19:56,632 wheel INFO adding 'Bio/SeqFeature.py' 2026-05-28 10:19:56,636 wheel INFO adding 'Bio/SeqRecord.py' 2026-05-28 10:19:56,638 wheel INFO adding 'Bio/__init__.py' 2026-05-28 10:19:56,639 wheel INFO adding 'Bio/_utils.py' 2026-05-28 10:19:56,641 wheel INFO adding 'Bio/bgzf.py' 2026-05-28 10:19:56,643 wheel INFO adding 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Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython. Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ 2026-05-28 10:19:57,823 gpep517 INFO The backend produced .dist/biopython-1.87-cp314-cp314-linux_riscv64.whl biopython-1.87-cp314-cp314-linux_riscv64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.14 >>> py3-biopython-pyc*: Package size: 6.2 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.87-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.14 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 10.8 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.87-r0.apk >>> py3-biopython: Build complete at Thu, 28 May 2026 10:20:12 +0000 elapsed time 0h 1m 43s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20260528.101834) ( 2/31) Purging py3-gpep517-pyc (19-r2) ( 3/31) Purging py3-gpep517 (19-r2) ( 4/31) Purging py3-installer-pyc (1.0.0-r0) ( 5/31) Purging py3-installer (1.0.0-r0) ( 6/31) Purging py3-setuptools-pyc (82.0.1-r1) ( 7/31) Purging py3-setuptools (82.0.1-r1) ( 8/31) Purging py3-wheel-pyc (0.47.0-r0) ( 9/31) Purging py3-wheel (0.47.0-r0) (10/31) Purging py3-packaging-pyc (26.2-r0) (11/31) Purging py3-packaging (26.2-r0) (12/31) Purging py3-parsing-pyc (3.3.2-r1) (13/31) Purging py3-parsing (3.3.2-r1) (14/31) Purging py3-numpy-dev (2.4.6-r0) (15/31) Purging py3-numpy-tests (2.4.6-r0) (16/31) Purging py3-numpy-pyc (2.4.6-r0) (17/31) Purging py3-numpy (2.4.6-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.14.3-r0) (20/31) Purging python3-pyc (3.14.3-r0) (21/31) Purging python3-pycache-pyc0 (3.14.3-r0) (22/31) Purging pyc (3.14.3-r0) (23/31) Purging python3 (3.14.3-r0) (24/31) Purging gdbm (1.26-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.5.2-r1) (27/31) Purging libpanelw (6.6_p20260516-r0) (28/31) Purging mpdecimal (4.0.1-r0) (29/31) Purging readline (8.3.3-r1) (30/31) Purging sqlite-libs (3.53.1-r0) (31/31) Purging xz-libs (5.8.3-r0) Executing busybox-1.37.0-r31.trigger OK: 666.5 MiB in 104 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...