>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:37:51 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r0) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.2-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20251231-r0) ( 7/31) Installing sqlite-libs (3.51.2-r1) ( 8/31) Installing python3 (3.12.12-r0) ( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0) (10/31) Installing pyc (3.12.12-r0) (11/31) Installing py3-numpy-pyc (2.3.5-r0) (12/31) Installing python3-pyc (3.12.12-r0) (13/31) Installing libgfortran (15.2.0-r2) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.3.5-r0) (16/31) Installing py3-numpy-tests (2.3.5-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (19-r1) (20/31) Installing py3-gpep517-pyc (19-r1) (21/31) Installing py3-parsing (3.3.1-r0) (22/31) Installing py3-parsing-pyc (3.3.1-r0) (23/31) Installing py3-packaging (25.0-r0) (24/31) Installing py3-packaging-pyc (25.0-r0) (25/31) Installing py3-setuptools (80.9.0-r2) (26/31) Installing py3-setuptools-pyc (80.9.0-r2) (27/31) Installing py3-wheel (0.46.1-r0) (28/31) Installing py3-wheel-pyc (0.46.1-r0) (29/31) Installing py3-numpy-dev (2.3.5-r0) (30/31) Installing python3-dev (3.12.12-r0) (31/31) Installing .makedepends-py3-biopython (20260127.013752) Executing busybox-1.37.0-r31.trigger OK: 581.3 MiB in 140 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz Connecting to files.pythonhosted.org ([2a04:4e42::223]:443) Connecting to files.pythonhosted.org ([2a04:4e42::223]:443) saving to '/var/cache/distfiles/edge/biopython-1.86.tar.gz.part' biopython-1.86.tar.g 17% |***** | 3362k 0:00:04 ETA biopython-1.86.tar.g 58% |****************** | 11.0M 0:00:01 ETA biopython-1.86.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/edge/biopython-1.86.tar.gz.part' saved /var/cache/distfiles/edge/biopython-1.86.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz /var/cache/distfiles/edge/biopython-1.86.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.86.tar.gz... 2026-01-27 01:37:57,387 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2026-01-27 01:37:57,410 root INFO running bdist_wheel 2026-01-27 01:37:57,425 root INFO running build 2026-01-27 01:37:57,425 root INFO running build_py 2026-01-27 01:37:57,429 root INFO creating build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,429 root INFO copying Bio/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,430 root INFO copying Bio/File.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,430 root INFO copying Bio/bgzf.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,430 root INFO copying Bio/Seq.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,431 root INFO copying Bio/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,431 root INFO copying Bio/SeqRecord.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,431 root INFO copying Bio/SeqFeature.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,432 root INFO copying Bio/pairwise2.py -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,432 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Affy 2026-01-27 01:37:57,432 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy 2026-01-27 01:37:57,433 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy 2026-01-27 01:37:57,433 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,433 root INFO copying Bio/Align/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,434 root INFO copying Bio/Align/emboss.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,434 root INFO copying Bio/Align/a2m.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,434 root INFO copying Bio/Align/chain.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,434 root INFO copying Bio/Align/bed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,435 root INFO copying Bio/Align/psl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,435 root INFO copying Bio/Align/clustal.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,435 root INFO copying Bio/Align/msf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,435 root INFO copying Bio/Align/tabular.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,436 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,436 root INFO copying Bio/Align/phylip.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,436 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,436 root INFO copying Bio/Align/fasta.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,437 root INFO copying Bio/Align/sam.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,437 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,437 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,437 root INFO copying Bio/Align/maf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,438 root INFO copying Bio/Align/mauve.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,438 root INFO copying Bio/Align/nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,438 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,438 root INFO copying Bio/Align/hhr.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,439 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,439 root INFO copying Bio/Align/analysis.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,439 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,440 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,440 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,440 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,441 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,441 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,441 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,441 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,442 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,442 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,442 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,442 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,443 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,443 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,443 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,443 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Alphabet 2026-01-27 01:37:57,444 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Alphabet 2026-01-27 01:37:57,444 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,444 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,444 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,445 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,445 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,445 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2026-01-27 01:37:57,446 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/CAPS 2026-01-27 01:37:57,446 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/CAPS 2026-01-27 01:37:57,446 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:57,446 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:57,447 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:57,447 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:57,447 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:57,447 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:57,448 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Compass 2026-01-27 01:37:57,448 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Compass 2026-01-27 01:37:57,448 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Data 2026-01-27 01:37:57,448 root INFO copying Bio/Data/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2026-01-27 01:37:57,449 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2026-01-27 01:37:57,449 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2026-01-27 01:37:57,449 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2026-01-27 01:37:57,450 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:57,450 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:57,450 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:57,450 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:57,451 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:57,451 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:57,451 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:57,452 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,452 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,452 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,453 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,453 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,453 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,453 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,454 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:57,454 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:57,454 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:57,454 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:57,455 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:57,455 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Geo 2026-01-27 01:37:57,455 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo 2026-01-27 01:37:57,455 root INFO copying Bio/Geo/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo 2026-01-27 01:37:57,456 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,456 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,456 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,456 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,457 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,457 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,457 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,457 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:57,458 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,458 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,458 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,459 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,459 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,459 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,459 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,460 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,460 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,460 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,460 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,461 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,461 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,461 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/HMM 2026-01-27 01:37:57,462 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2026-01-27 01:37:57,462 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:57,462 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:57,462 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:57,463 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:57,463 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:57,463 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:57,463 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:57,464 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:57,464 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:57,464 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:57,464 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:57,464 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,465 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,465 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,465 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,465 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,466 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,466 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,466 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,466 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Medline 2026-01-27 01:37:57,467 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Medline 2026-01-27 01:37:57,467 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,467 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,468 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,468 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,468 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,468 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,469 root INFO copying Bio/motifs/xms.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,469 root INFO copying Bio/motifs/meme.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,469 root INFO copying Bio/motifs/mast.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,469 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,469 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,470 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,470 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,470 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,471 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,471 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,471 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,471 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,472 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,472 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,472 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,473 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/NMR 2026-01-27 01:37:57,473 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2026-01-27 01:37:57,473 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2026-01-27 01:37:57,473 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2026-01-27 01:37:57,473 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Pathway 2026-01-27 01:37:57,474 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway 2026-01-27 01:37:57,474 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,474 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,474 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,475 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,475 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,476 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,476 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,476 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,476 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,477 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,477 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,477 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,477 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,478 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,478 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,478 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,478 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,479 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,479 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,479 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,480 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,480 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,480 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,480 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,481 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,481 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,481 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,481 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,482 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,482 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,482 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,482 root INFO copying Bio/PDB/Model.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,483 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,483 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,483 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,483 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,484 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,484 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,484 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,484 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,485 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,485 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,485 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,485 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,486 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,486 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:57,486 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:57,487 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:57,487 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:57,487 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PopGen 2026-01-27 01:37:57,487 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen 2026-01-27 01:37:57,488 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,488 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,488 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,488 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,489 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:57,489 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:57,489 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:57,489 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:57,490 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:57,491 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,491 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,491 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,491 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,492 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,492 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,492 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,492 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:57,493 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,493 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,493 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,493 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,494 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,494 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,494 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,495 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,495 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,495 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,495 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,496 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,496 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,496 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,496 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,497 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,497 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,497 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,497 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,498 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,498 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,498 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,499 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,499 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,499 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,499 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,500 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,500 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,500 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,500 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,501 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,501 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,501 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,501 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,502 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,502 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,502 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,502 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,503 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,503 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,503 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,503 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,504 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,504 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,504 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,505 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,505 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,505 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,505 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,506 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,506 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,506 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,506 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,507 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,507 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,507 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,508 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,508 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,508 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,508 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,509 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,509 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,509 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,509 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,510 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,510 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,510 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,510 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,511 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,511 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,511 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,511 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,512 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,512 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,512 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,512 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,513 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:57,513 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:57,513 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,513 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,514 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,514 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/TogoWS 2026-01-27 01:37:57,514 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/TogoWS 2026-01-27 01:37:57,515 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,515 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,515 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,515 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,516 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,516 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,516 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,516 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,517 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,517 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,517 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,517 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,518 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,518 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,518 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,518 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,519 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:57,519 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,519 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,519 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,520 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,520 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,520 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,520 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,521 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,521 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,521 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,521 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/UniGene 2026-01-27 01:37:57,522 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniGene 2026-01-27 01:37:57,522 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:57,522 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:57,522 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:57,523 root INFO creating build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,523 root INFO copying BioSQL/__init__.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,523 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,523 root INFO copying BioSQL/Loader.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,524 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,524 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,524 root INFO running egg_info 2026-01-27 01:37:57,527 root INFO writing biopython.egg-info/PKG-INFO 2026-01-27 01:37:57,527 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-01-27 01:37:57,528 root INFO writing requirements to biopython.egg-info/requires.txt 2026-01-27 01:37:57,528 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-01-27 01:37:57,542 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-01-27 01:37:57,581 root INFO reading manifest template 'MANIFEST.in' 2026-01-27 01:37:57,649 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-01-27 01:37:57,653 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-01-27 01:37:57,656 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-01-27 01:37:57,658 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-01-27 01:37:57,661 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-01-27 01:37:57,663 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-01-27 01:37:57,668 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-01-27 01:37:57,668 root INFO adding license file 'LICENSE' 2026-01-27 01:37:57,668 root INFO adding license file 'LICENSE.rst' 2026-01-27 01:37:57,703 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2026-01-27 01:37:57,727 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,727 root INFO copying Bio/py.typed -> build/lib.linux-aarch64-cpython-312/Bio 2026-01-27 01:37:57,728 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,728 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,728 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,729 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,729 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,729 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,730 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,730 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,730 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,731 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,731 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,731 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,731 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,732 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,732 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,732 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,732 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,732 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,733 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,733 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,733 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,733 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,734 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,734 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,734 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,734 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,735 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,735 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,735 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,735 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,736 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,736 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,736 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,736 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,737 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,737 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,737 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,737 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:57,738 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:57,738 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:57,738 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:57,739 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,739 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,739 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,739 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,740 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,740 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,740 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,740 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,741 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,741 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,741 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,741 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,742 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,742 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,742 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,742 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,743 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,743 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,743 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,743 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,744 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,744 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,744 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,744 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,745 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,745 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,745 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,746 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,746 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,746 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,747 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,747 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,747 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,748 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,748 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,748 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,749 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,749 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,749 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,750 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,750 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,750 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,750 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,751 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,751 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,751 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,752 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,752 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,752 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,752 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,753 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,753 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,753 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,754 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,754 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,754 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,754 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,755 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,755 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,755 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,755 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,756 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,756 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,756 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,756 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,757 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,757 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,757 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,757 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,758 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,758 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,758 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,758 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,759 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,759 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,759 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,759 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,760 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,760 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,760 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,760 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,761 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,761 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,761 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,761 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,762 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,762 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,762 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,762 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,763 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,763 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,763 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,763 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,763 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,764 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,764 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,764 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,765 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,765 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,765 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,765 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,765 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,766 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,766 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,766 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,766 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,767 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,767 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,767 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,767 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,768 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,768 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,768 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,768 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,769 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,769 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,769 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,769 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,770 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,770 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,770 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,770 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,771 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,771 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,771 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,771 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,772 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,772 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,772 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,772 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,773 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,773 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,773 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,773 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,774 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,776 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,776 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,776 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,777 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,777 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,777 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,778 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,778 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2026-01-27 01:37:57,809 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,809 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,809 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,810 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,810 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,810 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,810 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,811 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,811 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,811 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,811 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,812 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,812 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,812 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,812 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,813 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,813 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,813 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:57,813 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:57,814 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:57,814 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:57,814 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:57,814 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:37:57,815 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:57,815 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,815 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,815 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:37:57,816 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,816 root INFO copying BioSQL/py.typed -> build/lib.linux-aarch64-cpython-312/BioSQL 2026-01-27 01:37:57,822 root INFO running build_ext 2026-01-27 01:37:57,824 root INFO building 'Bio.Align._aligncore' extension 2026-01-27 01:37:57,824 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Align 2026-01-27 01:37:57,824 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_aligncore.o 2026-01-27 01:37:58,078 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.cpython-312-aarch64-linux-musl.so 2026-01-27 01:37:58,088 root INFO building 'Bio.Align._alignmentcounts' extension 2026-01-27 01:37:58,088 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_alignmentcounts.o 2026-01-27 01:37:58,821 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-aarch64-linux-musl.so 2026-01-27 01:37:58,832 root INFO building 'Bio.Align._codonaligner' extension 2026-01-27 01:37:58,832 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o 2026-01-27 01:37:59,362 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-aarch64-linux-musl.so 2026-01-27 01:37:59,372 root INFO building 'Bio.Align._pairwisealigner' extension 2026-01-27 01:37:59,372 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o 2026-01-27 01:38:05,934 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:05,946 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-01-27 01:38:05,946 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:05,946 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o 2026-01-27 01:38:06,136 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:06,146 root INFO building 'Bio.cpairwise2' extension 2026-01-27 01:38:06,147 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o 2026-01-27 01:38:06,462 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:06,472 root INFO building 'Bio.Nexus.cnexus' extension 2026-01-27 01:38:06,473 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Nexus 2026-01-27 01:38:06,473 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o 2026-01-27 01:38:06,618 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:06,628 root INFO building 'Bio.motifs._pwm' extension 2026-01-27 01:38:06,628 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/motifs 2026-01-27 01:38:06,628 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o 2026-01-27 01:38:06,795 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:06,805 root INFO building 'Bio.Cluster._cluster' extension 2026-01-27 01:38:06,806 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Cluster 2026-01-27 01:38:06,806 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:08,983 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:09,719 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:09,730 root INFO building 'Bio.PDB.ccealign' extension 2026-01-27 01:38:09,730 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/PDB 2026-01-27 01:38:09,731 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o 2026-01-27 01:38:10,065 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:10,075 root INFO building 'Bio.PDB.kdtrees' extension 2026-01-27 01:38:10,075 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o 2026-01-27 01:38:10,498 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:10,509 root INFO building 'Bio.PDB._bcif_helper' extension 2026-01-27 01:38:10,509 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.o 2026-01-27 01:38:10,675 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:10,685 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-01-27 01:38:10,685 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/SeqIO 2026-01-27 01:38:10,685 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o 2026-01-27 01:38:10,890 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-musl.so 2026-01-27 01:38:10,906 root INFO installing to build/bdist.linux-aarch64/wheel 2026-01-27 01:38:10,906 root INFO running install 2026-01-27 01:38:10,916 root INFO running install_lib 2026-01-27 01:38:10,920 root INFO creating build/bdist.linux-aarch64/wheel 2026-01-27 01:38:10,920 root INFO creating build/bdist.linux-aarch64/wheel/BioSQL 2026-01-27 01:38:10,920 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,920 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,920 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/py.typed -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,921 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,921 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,921 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2026-01-27 01:38:10,921 root INFO creating build/bdist.linux-aarch64/wheel/Bio 2026-01-27 01:38:10,922 root INFO creating build/bdist.linux-aarch64/wheel/Bio/HMM 2026-01-27 01:38:10,922 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2026-01-27 01:38:10,922 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,922 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Phylo 2026-01-27 01:38:10,922 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,922 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,923 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,923 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,923 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,923 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,923 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,924 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,925 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,925 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Phylo/PAML 2026-01-27 01:38:10,925 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,925 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,925 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,925 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:10,926 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,927 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2026-01-27 01:38:10,927 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Restriction 2026-01-27 01:38:10,927 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2026-01-27 01:38:10,927 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2026-01-27 01:38:10,927 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2026-01-27 01:38:10,928 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2026-01-27 01:38:10,929 root INFO creating build/bdist.linux-aarch64/wheel/Bio/AlignIO 2026-01-27 01:38:10,929 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,929 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,929 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,929 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,929 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,930 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:10,931 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Compass 2026-01-27 01:38:10,931 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Compass 2026-01-27 01:38:10,931 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Nexus 2026-01-27 01:38:10,931 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,931 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,932 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,932 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,932 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,932 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,932 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2026-01-27 01:38:10,933 root INFO creating build/bdist.linux-aarch64/wheel/Bio/codonalign 2026-01-27 01:38:10,933 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2026-01-27 01:38:10,933 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2026-01-27 01:38:10,933 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2026-01-27 01:38:10,933 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Cluster 2026-01-27 01:38:10,934 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2026-01-27 01:38:10,934 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2026-01-27 01:38:10,934 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2026-01-27 01:38:10,934 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2026-01-27 01:38:10,935 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2026-01-27 01:38:10,935 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Graphics 2026-01-27 01:38:10,935 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,935 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,936 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,936 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,936 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,936 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,936 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,936 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,937 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,938 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,938 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,938 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,938 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,938 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:10,939 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2026-01-27 01:38:10,939 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/File.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,939 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Sequencing 2026-01-27 01:38:10,939 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:10,939 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:10,939 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:10,940 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG 2026-01-27 01:38:10,940 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG 2026-01-27 01:38:10,940 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Gene 2026-01-27 01:38:10,940 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Gene 2026-01-27 01:38:10,941 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/KGML 2026-01-27 01:38:10,941 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:10,941 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:10,941 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:10,941 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Map 2026-01-27 01:38:10,941 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Map 2026-01-27 01:38:10,942 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Compound 2026-01-27 01:38:10,942 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Compound 2026-01-27 01:38:10,942 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG 2026-01-27 01:38:10,942 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Enzyme 2026-01-27 01:38:10,942 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Enzyme 2026-01-27 01:38:10,943 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,943 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/bgzf.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,943 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Pathway 2026-01-27 01:38:10,943 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway 2026-01-27 01:38:10,943 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Pathway/Rep 2026-01-27 01:38:10,944 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:10,944 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:10,944 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:10,944 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SCOP 2026-01-27 01:38:10,944 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,944 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2026-01-27 01:38:10,945 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Seq.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,946 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Data 2026-01-27 01:38:10,946 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2026-01-27 01:38:10,946 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2026-01-27 01:38:10,946 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2026-01-27 01:38:10,946 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2026-01-27 01:38:10,947 root INFO creating build/bdist.linux-aarch64/wheel/Bio/TogoWS 2026-01-27 01:38:10,947 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/TogoWS 2026-01-27 01:38:10,947 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Medline 2026-01-27 01:38:10,947 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Medline 2026-01-27 01:38:10,947 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Blast 2026-01-27 01:38:10,948 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2026-01-27 01:38:10,948 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2026-01-27 01:38:10,948 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2026-01-27 01:38:10,948 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2026-01-27 01:38:10,948 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2026-01-27 01:38:10,949 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,949 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PopGen 2026-01-27 01:38:10,949 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen 2026-01-27 01:38:10,949 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PopGen/GenePop 2026-01-27 01:38:10,950 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:10,950 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:10,950 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:10,950 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Emboss 2026-01-27 01:38:10,950 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2026-01-27 01:38:10,950 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2026-01-27 01:38:10,951 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2026-01-27 01:38:10,951 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SwissProt 2026-01-27 01:38:10,951 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SwissProt 2026-01-27 01:38:10,951 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-aarch64/wheel/./Bio/SwissProt 2026-01-27 01:38:10,951 root INFO creating build/bdist.linux-aarch64/wheel/Bio/UniProt 2026-01-27 01:38:10,952 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/UniProt 2026-01-27 01:38:10,952 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-aarch64/wheel/./Bio/UniProt 2026-01-27 01:38:10,952 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO 2026-01-27 01:38:10,952 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:10,953 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:10,953 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:10,953 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:10,953 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:10,953 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/BlastIO 2026-01-27 01:38:10,953 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:10,954 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:10,954 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:10,954 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/_model 2026-01-27 01:38:10,954 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:10,954 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:10,955 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:10,955 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:10,955 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:10,955 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,955 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,956 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,956 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,956 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,956 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:10,956 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,957 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:10,958 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:10,958 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:10,958 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:10,958 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:10,958 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:10,959 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:10,959 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/InfernalIO 2026-01-27 01:38:10,959 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:10,959 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:10,959 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:10,960 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:10,960 root INFO creating build/bdist.linux-aarch64/wheel/Bio/CAPS 2026-01-27 01:38:10,960 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/CAPS 2026-01-27 01:38:10,960 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Affy 2026-01-27 01:38:10,960 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Affy 2026-01-27 01:38:10,960 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-aarch64/wheel/./Bio/Affy 2026-01-27 01:38:10,961 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SVDSuperimposer 2026-01-27 01:38:10,961 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SVDSuperimposer 2026-01-27 01:38:10,961 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SeqUtils 2026-01-27 01:38:10,961 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,961 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,962 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,962 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,962 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,962 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,962 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:10,963 root INFO creating build/bdist.linux-aarch64/wheel/Bio/motifs 2026-01-27 01:38:10,963 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,963 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,963 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,963 root INFO creating build/bdist.linux-aarch64/wheel/Bio/motifs/jaspar 2026-01-27 01:38:10,963 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,964 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,965 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,965 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,965 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,965 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,965 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2026-01-27 01:38:10,966 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,966 root INFO creating build/bdist.linux-aarch64/wheel/Bio/phenotype 2026-01-27 01:38:10,966 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2026-01-27 01:38:10,966 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2026-01-27 01:38:10,966 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2026-01-27 01:38:10,967 root INFO creating build/bdist.linux-aarch64/wheel/Bio/NMR 2026-01-27 01:38:10,967 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2026-01-27 01:38:10,967 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2026-01-27 01:38:10,967 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2026-01-27 01:38:10,967 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,968 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,969 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,970 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,970 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,970 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,970 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,970 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,971 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,971 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,971 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,971 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,971 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,972 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,972 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,972 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,972 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,972 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,973 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,974 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,974 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,974 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PDB/mmtf 2026-01-27 01:38:10,974 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:10,974 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:10,974 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,975 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,976 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,976 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,976 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,976 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,976 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,977 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2026-01-27 01:38:10,977 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:10,977 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez 2026-01-27 01:38:10,977 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Entrez 2026-01-27 01:38:10,977 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez/XSDs 2026-01-27 01:38:10,978 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:10,978 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:10,978 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:10,978 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-aarch64/wheel/./Bio/Entrez 2026-01-27 01:38:10,978 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez/DTDs 2026-01-27 01:38:10,979 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,979 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,979 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,979 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,979 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,980 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,981 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,982 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,983 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,984 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,985 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,986 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,987 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,988 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,989 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,990 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,991 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,991 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,991 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,991 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,991 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,992 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,992 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,992 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,992 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,992 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,993 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,994 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,994 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,994 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,994 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 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01:38:10,997 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,997 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,997 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,997 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,998 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,998 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,998 root INFO 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INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,999 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:10,999 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,000 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,000 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,000 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,000 root INFO copying 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,001 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,002 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,002 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,002 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,002 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,002 root INFO 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INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,007 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,007 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,007 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,007 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,007 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 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build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,009 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,009 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,009 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,009 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,009 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,010 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,011 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,012 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,013 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,014 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,014 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,014 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,014 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,014 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,015 root INFO copying 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,017 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,017 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,017 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,017 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,018 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,019 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,020 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,020 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,020 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,020 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,020 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,021 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,021 root INFO 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,022 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,022 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,022 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,023 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,024 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,025 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,026 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,027 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,027 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,027 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,027 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,027 root INFO creating build/bdist.linux-aarch64/wheel/Bio/GenBank 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/py.typed -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:11,028 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:11,029 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SeqIO 2026-01-27 01:38:11,029 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,029 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,029 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,030 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,030 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,030 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,030 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,031 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,032 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,032 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,032 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,032 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,032 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,033 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,034 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:11,034 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Geo 2026-01-27 01:38:11,034 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Geo 2026-01-27 01:38:11,034 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-aarch64/wheel/./Bio/Geo 2026-01-27 01:38:11,034 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Alphabet 2026-01-27 01:38:11,035 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Alphabet 2026-01-27 01:38:11,035 root INFO creating build/bdist.linux-aarch64/wheel/Bio/UniGene 2026-01-27 01:38:11,035 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/UniGene 2026-01-27 01:38:11,035 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align 2026-01-27 01:38:11,035 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,036 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,037 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,037 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,037 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,037 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,038 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,038 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,038 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,038 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,038 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,039 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,039 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,039 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,039 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align/substitution_matrices 2026-01-27 01:38:11,039 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,040 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,040 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,040 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,040 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,040 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,040 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,041 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,042 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,043 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,044 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,045 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,045 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,045 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,045 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,045 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,046 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,047 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,047 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,047 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,047 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2026-01-27 01:38:11,048 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-aarch64/wheel/./Bio 2026-01-27 01:38:11,048 root INFO creating build/bdist.linux-aarch64/wheel/Bio/ExPASy 2026-01-27 01:38:11,048 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,048 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,048 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,048 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,049 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,049 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:11,049 root INFO running install_egg_info 2026-01-27 01:38:11,052 root INFO Copying biopython.egg-info to build/bdist.linux-aarch64/wheel/./biopython-1.86-py3.12.egg-info 2026-01-27 01:38:11,053 root INFO running install_scripts 2026-01-27 01:38:11,058 root INFO creating build/bdist.linux-aarch64/wheel/biopython-1.86.dist-info/WHEEL 2026-01-27 01:38:11,059 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.86/.dist/.tmp-fqb3jszb/biopython-1.86-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it 2026-01-27 01:38:11,059 wheel INFO adding 'Bio/File.py' 2026-01-27 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adding 'BioSQL/Loader.py' 2026-01-27 01:38:11,199 wheel INFO adding 'BioSQL/__init__.py' 2026-01-27 01:38:11,199 wheel INFO adding 'BioSQL/py.typed' 2026-01-27 01:38:11,199 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE' 2026-01-27 01:38:11,199 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst' 2026-01-27 01:38:11,199 wheel INFO adding 'biopython-1.86.dist-info/METADATA' 2026-01-27 01:38:11,200 wheel INFO adding 'biopython-1.86.dist-info/WHEEL' 2026-01-27 01:38:11,200 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt' 2026-01-27 01:38:11,202 wheel INFO adding 'biopython-1.86.dist-info/RECORD' 2026-01-27 01:38:11,204 root INFO removing build/bdist.linux-aarch64/wheel 2026-01-27 01:38:11,218 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_aarch64.whl biopython-1.86-cp312-cp312-linux_aarch64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' 'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' 'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.12 >>> py3-biopython-pyc*: Package size: 5.9 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-aarch64.so.1 >>> py3-biopython*: Package size: 11.3 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.86-r0.apk >>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:38:14 +0000 elapsed time 0h 0m 23s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20260127.013752) ( 2/31) Purging py3-gpep517-pyc (19-r1) ( 3/31) Purging py3-gpep517 (19-r1) ( 4/31) Purging py3-installer-pyc (0.7.0-r2) ( 5/31) Purging py3-installer (0.7.0-r2) ( 6/31) Purging py3-setuptools-pyc (80.9.0-r2) ( 7/31) Purging py3-setuptools (80.9.0-r2) ( 8/31) Purging py3-wheel-pyc (0.46.1-r0) ( 9/31) Purging py3-wheel (0.46.1-r0) (10/31) Purging py3-packaging-pyc (25.0-r0) (11/31) Purging py3-packaging (25.0-r0) (12/31) Purging py3-parsing-pyc (3.3.1-r0) (13/31) Purging py3-parsing (3.3.1-r0) (14/31) Purging py3-numpy-dev (2.3.5-r0) (15/31) Purging py3-numpy-tests (2.3.5-r0) (16/31) Purging py3-numpy-pyc (2.3.5-r0) (17/31) Purging py3-numpy (2.3.5-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.12.12-r0) (20/31) Purging python3-pyc (3.12.12-r0) (21/31) Purging python3-pycache-pyc0 (3.12.12-r0) (22/31) Purging pyc (3.12.12-r0) (23/31) Purging python3 (3.12.12-r0) (24/31) Purging gdbm (1.26-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.5.2-r0) (27/31) Purging libgfortran (15.2.0-r2) (28/31) Purging libpanelw (6.6_p20251231-r0) (29/31) Purging mpdecimal (4.0.1-r0) (30/31) Purging sqlite-libs (3.51.2-r1) (31/31) Purging xz-libs (5.8.2-r0) Executing busybox-1.37.0-r31.trigger OK: 432.7 MiB in 109 packages >>> py3-biopython: Updating the community/aarch64 repository index... >>> py3-biopython: Signing the index...