>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:37:51 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r0) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.2-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20251231-r0) ( 7/31) Installing sqlite-libs (3.51.2-r1) ( 8/31) Installing python3 (3.12.12-r0) ( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0) (10/31) Installing pyc (3.12.12-r0) (11/31) Installing py3-numpy-pyc (2.3.5-r0) (12/31) Installing python3-pyc (3.12.12-r0) (13/31) Installing libgfortran (15.2.0-r2) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.3.5-r0) (16/31) Installing py3-numpy-tests (2.3.5-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (19-r1) (20/31) Installing py3-gpep517-pyc (19-r1) (21/31) Installing py3-parsing (3.3.1-r0) (22/31) Installing py3-parsing-pyc (3.3.1-r0) (23/31) Installing py3-packaging (25.0-r0) (24/31) Installing py3-packaging-pyc (25.0-r0) (25/31) Installing py3-setuptools (80.9.0-r2) (26/31) Installing py3-setuptools-pyc (80.9.0-r2) (27/31) Installing py3-wheel (0.46.1-r0) (28/31) Installing py3-wheel-pyc (0.46.1-r0) (29/31) Installing py3-numpy-dev (2.3.5-r0) (30/31) Installing python3-dev (3.12.12-r0) (31/31) Installing .makedepends-py3-biopython (20260127.013752) Executing busybox-1.37.0-r31.trigger OK: 409.8 MiB in 136 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz /var/cache/distfiles/edge/biopython-1.86.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz /var/cache/distfiles/edge/biopython-1.86.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.86.tar.gz... 2026-01-27 01:37:57,690 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2026-01-27 01:37:57,715 root INFO running bdist_wheel 2026-01-27 01:37:57,731 root INFO running build 2026-01-27 01:37:57,731 root INFO running build_py 2026-01-27 01:37:57,735 root INFO creating build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,736 root INFO copying Bio/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,736 root INFO copying Bio/File.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,736 root INFO copying Bio/bgzf.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,737 root INFO copying Bio/Seq.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,737 root INFO copying Bio/_utils.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,737 root INFO copying Bio/SeqRecord.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,738 root INFO copying Bio/SeqFeature.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,738 root INFO copying Bio/pairwise2.py -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:57,739 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Affy 2026-01-27 01:37:57,739 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Affy 2026-01-27 01:37:57,739 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-armv8l-cpython-312/Bio/Affy 2026-01-27 01:37:57,740 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,740 root INFO copying Bio/Align/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,740 root INFO copying Bio/Align/emboss.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,741 root INFO copying Bio/Align/a2m.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,741 root INFO copying Bio/Align/chain.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,741 root INFO copying Bio/Align/bed.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,742 root INFO copying Bio/Align/psl.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,742 root INFO copying Bio/Align/clustal.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,742 root INFO copying Bio/Align/msf.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,742 root INFO copying Bio/Align/tabular.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,743 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,743 root INFO copying Bio/Align/phylip.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,743 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,744 root INFO copying Bio/Align/fasta.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,744 root INFO copying Bio/Align/sam.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,744 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,744 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,745 root INFO copying Bio/Align/maf.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,745 root INFO copying Bio/Align/mauve.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,745 root INFO copying Bio/Align/nexus.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,746 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,746 root INFO copying Bio/Align/hhr.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,746 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,746 root INFO copying Bio/Align/analysis.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,747 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:57,747 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,747 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:57,748 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,748 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,748 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,748 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,749 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,749 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,749 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,749 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,750 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,750 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,750 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,751 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-armv8l-cpython-312/Bio/AlignIO 2026-01-27 01:37:57,751 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Alphabet 2026-01-27 01:37:57,751 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Alphabet 2026-01-27 01:37:57,751 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,751 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,752 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,752 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,752 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,753 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-armv8l-cpython-312/Bio/Blast 2026-01-27 01:37:57,753 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/CAPS 2026-01-27 01:37:57,753 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/CAPS 2026-01-27 01:37:57,754 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:37:57,754 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:37:57,754 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/codonalign 2026-01-27 01:37:57,754 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/codonalign 2026-01-27 01:37:57,755 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-armv8l-cpython-312/Bio/codonalign 2026-01-27 01:37:57,755 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-armv8l-cpython-312/Bio/codonalign 2026-01-27 01:37:57,755 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Compass 2026-01-27 01:37:57,755 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Compass 2026-01-27 01:37:57,756 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Data 2026-01-27 01:37:57,756 root INFO copying Bio/Data/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Data 2026-01-27 01:37:57,756 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-armv8l-cpython-312/Bio/Data 2026-01-27 01:37:57,756 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-armv8l-cpython-312/Bio/Data 2026-01-27 01:37:57,757 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-armv8l-cpython-312/Bio/Data 2026-01-27 01:37:57,757 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Emboss 2026-01-27 01:37:57,757 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Emboss 2026-01-27 01:37:57,758 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-armv8l-cpython-312/Bio/Emboss 2026-01-27 01:37:57,758 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-armv8l-cpython-312/Bio/Emboss 2026-01-27 01:37:57,758 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Entrez 2026-01-27 01:37:57,758 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Entrez 2026-01-27 01:37:57,759 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-armv8l-cpython-312/Bio/Entrez 2026-01-27 01:37:57,759 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,760 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,760 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,760 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,760 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,761 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,761 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-armv8l-cpython-312/Bio/ExPASy 2026-01-27 01:37:57,761 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/GenBank 2026-01-27 01:37:57,761 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/GenBank 2026-01-27 01:37:57,762 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-armv8l-cpython-312/Bio/GenBank 2026-01-27 01:37:57,762 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-armv8l-cpython-312/Bio/GenBank 2026-01-27 01:37:57,762 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-armv8l-cpython-312/Bio/GenBank 2026-01-27 01:37:57,763 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Geo 2026-01-27 01:37:57,763 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Geo 2026-01-27 01:37:57,763 root INFO copying Bio/Geo/Record.py -> build/lib.linux-armv8l-cpython-312/Bio/Geo 2026-01-27 01:37:57,764 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,764 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,764 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,764 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,764 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,765 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,765 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,765 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics 2026-01-27 01:37:57,766 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,766 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,766 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,766 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,767 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,767 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,767 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,767 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,768 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,768 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,768 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,768 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,769 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:57,769 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/HMM 2026-01-27 01:37:57,769 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/HMM 2026-01-27 01:37:57,770 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG 2026-01-27 01:37:57,770 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG 2026-01-27 01:37:57,770 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG 2026-01-27 01:37:57,770 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:57,771 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:57,771 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:57,771 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:57,771 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:57,772 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:57,772 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:57,772 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:57,772 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,773 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,773 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,773 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:57,773 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,774 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,774 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,774 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:57,774 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Medline 2026-01-27 01:37:57,775 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Medline 2026-01-27 01:37:57,775 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,775 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,775 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,776 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,776 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,776 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,776 root INFO copying Bio/motifs/xms.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,777 root INFO copying Bio/motifs/meme.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,777 root INFO copying Bio/motifs/mast.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,777 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,777 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,778 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:57,778 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,778 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,778 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-armv8l-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:57,779 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,779 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,779 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,780 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,780 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,780 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:57,780 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/NMR 2026-01-27 01:37:57,781 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/NMR 2026-01-27 01:37:57,781 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-armv8l-cpython-312/Bio/NMR 2026-01-27 01:37:57,781 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-armv8l-cpython-312/Bio/NMR 2026-01-27 01:37:57,781 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Pathway 2026-01-27 01:37:57,782 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Pathway 2026-01-27 01:37:57,782 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,782 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,782 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,783 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:57,783 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,784 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,784 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,784 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,784 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,785 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,785 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,785 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,785 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,786 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,786 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,786 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,786 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,787 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,787 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,787 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,788 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,788 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,788 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,788 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,789 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,789 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,789 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,790 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,790 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,790 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,790 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,790 root INFO copying Bio/PDB/Model.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,791 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,791 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,791 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,791 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,792 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,792 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,792 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,792 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,793 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,793 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,793 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,793 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,794 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:57,794 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/phenotype 2026-01-27 01:37:57,794 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/phenotype 2026-01-27 01:37:57,795 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-armv8l-cpython-312/Bio/phenotype 2026-01-27 01:37:57,795 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-armv8l-cpython-312/Bio/phenotype 2026-01-27 01:37:57,795 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/PopGen 2026-01-27 01:37:57,795 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/PopGen 2026-01-27 01:37:57,796 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,796 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,796 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,796 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:57,797 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Restriction 2026-01-27 01:37:57,797 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Restriction 2026-01-27 01:37:57,797 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-armv8l-cpython-312/Bio/Restriction 2026-01-27 01:37:57,797 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-armv8l-cpython-312/Bio/Restriction 2026-01-27 01:37:57,798 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-armv8l-cpython-312/Bio/Restriction 2026-01-27 01:37:57,799 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,799 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,799 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,799 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,800 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,800 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,800 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,800 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-armv8l-cpython-312/Bio/SCOP 2026-01-27 01:37:57,801 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,801 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,801 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,801 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,802 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,802 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO 2026-01-27 01:37:57,802 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,803 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,803 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,803 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,803 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,804 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:57,804 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,804 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,804 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,805 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:57,805 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,805 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,805 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:57,806 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,806 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,806 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,807 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,807 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,807 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,807 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:57,808 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,808 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,808 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,808 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,809 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:57,809 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,809 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,809 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,810 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,810 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,810 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:57,811 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,811 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,811 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:57,812 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,812 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,812 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,812 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,813 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,813 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,813 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,813 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,814 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,814 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,814 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,814 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,815 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,815 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,815 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,815 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,816 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,816 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,816 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,817 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,817 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,817 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,817 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,818 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:57,818 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,818 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,818 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,819 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,819 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,819 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,819 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,820 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-armv8l-cpython-312/Bio/SeqUtils 2026-01-27 01:37:57,820 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,820 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,821 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-armv8l-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,821 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-armv8l-cpython-312/Bio/Sequencing 2026-01-27 01:37:57,821 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:57,821 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:57,822 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,822 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,822 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-armv8l-cpython-312/Bio/SwissProt 2026-01-27 01:37:57,822 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/TogoWS 2026-01-27 01:37:57,823 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/TogoWS 2026-01-27 01:37:57,823 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,823 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,823 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,824 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,824 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,824 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,825 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,825 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,825 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,825 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,826 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,826 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,826 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,826 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,827 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,827 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,827 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo 2026-01-27 01:37:57,828 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,828 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,828 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,828 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,829 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,829 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,829 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,829 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,830 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,830 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:57,830 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/UniGene 2026-01-27 01:37:57,830 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/UniGene 2026-01-27 01:37:57,831 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/UniProt 2026-01-27 01:37:57,831 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-armv8l-cpython-312/Bio/UniProt 2026-01-27 01:37:57,831 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-armv8l-cpython-312/Bio/UniProt 2026-01-27 01:37:57,831 root INFO creating build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,832 root INFO copying BioSQL/__init__.py -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,832 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,832 root INFO copying BioSQL/Loader.py -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,832 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,833 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:57,833 root INFO running egg_info 2026-01-27 01:37:57,836 root INFO writing biopython.egg-info/PKG-INFO 2026-01-27 01:37:57,836 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-01-27 01:37:57,837 root INFO writing requirements to biopython.egg-info/requires.txt 2026-01-27 01:37:57,837 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-01-27 01:37:57,852 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-01-27 01:37:57,895 root INFO reading manifest template 'MANIFEST.in' 2026-01-27 01:37:57,968 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-01-27 01:37:57,973 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-01-27 01:37:57,976 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-01-27 01:37:57,979 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-01-27 01:37:57,981 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-01-27 01:37:57,984 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-01-27 01:37:57,990 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-01-27 01:37:57,990 root INFO adding license file 'LICENSE' 2026-01-27 01:37:57,990 root INFO adding license file 'LICENSE.rst' 2026-01-27 01:37:58,028 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2026-01-27 01:37:58,055 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:58,055 root INFO copying Bio/py.typed -> build/lib.linux-armv8l-cpython-312/Bio 2026-01-27 01:37:58,056 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,056 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,056 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,056 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,057 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,057 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:58,058 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:58,058 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,058 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,058 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,059 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,059 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,059 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,060 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,060 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,060 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,060 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,060 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,061 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,061 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,061 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,061 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,062 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,062 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,062 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,062 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,063 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,063 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,063 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,063 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,064 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,064 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,064 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,064 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,065 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,065 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,065 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,065 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:58,066 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:37:58,066 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:37:58,066 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:37:58,067 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,067 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,067 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,067 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,068 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,068 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,068 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,068 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,069 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,069 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,069 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,070 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,070 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,070 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,070 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,071 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,071 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,071 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,071 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,072 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,072 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,072 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,072 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,073 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,073 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,073 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,074 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,074 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,074 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,075 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,075 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,075 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,075 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,076 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,076 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,077 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,077 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,077 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,078 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,078 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,078 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,078 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,079 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,079 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,079 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,080 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,080 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,080 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,080 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,081 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,081 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,081 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,082 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,082 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,082 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,082 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,083 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,083 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,083 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,084 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,084 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,084 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,084 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,085 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,085 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,085 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,085 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,086 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,086 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,086 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,086 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,087 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,087 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,087 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,087 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,088 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,088 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,088 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,088 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,089 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,089 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,089 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,089 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,090 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,090 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,090 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,090 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,091 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,091 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,091 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,091 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,092 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,092 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,092 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,092 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,093 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,093 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,093 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,093 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,094 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,094 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,094 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,094 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,095 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,095 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,095 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,096 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,096 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,096 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,096 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,096 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,097 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,097 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,097 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,098 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,098 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,098 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,098 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,099 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,099 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,099 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,099 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,101 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,101 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,101 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,101 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,102 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,102 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,102 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,102 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,103 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,103 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,103 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,103 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,104 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,104 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,104 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,104 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,105 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,105 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,105 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,105 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,106 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,106 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,106 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,106 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,107 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,107 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,107 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,107 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,108 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,108 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,108 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,108 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,109 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,109 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,109 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,110 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,110 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,110 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,110 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,111 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,111 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,111 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,111 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,112 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,112 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,112 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,112 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,113 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,113 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,113 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,113 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,114 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,114 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,114 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,115 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,115 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,115 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,115 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,116 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,116 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,116 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,117 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,117 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,117 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,118 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,118 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,118 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,118 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,119 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,119 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,119 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,119 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,120 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,120 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,120 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,120 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,120 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,121 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,121 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,121 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,122 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,122 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,122 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,122 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,123 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,123 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,123 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,123 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,124 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,124 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,124 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,124 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,125 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,125 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,125 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,125 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,126 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,126 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,126 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,126 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,127 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,127 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,127 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,127 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,128 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,128 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,128 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,129 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,129 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,129 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,129 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,130 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,130 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,130 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,131 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,131 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,131 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,132 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,132 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,132 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,132 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,133 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,133 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,133 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,133 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,134 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,134 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,134 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,134 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,135 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,135 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,135 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,135 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,136 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,136 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,136 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,136 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,137 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,137 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,137 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,137 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,138 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,138 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,138 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,139 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,139 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,139 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,139 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,140 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,140 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,140 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,140 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,141 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,141 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,141 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,141 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,142 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,142 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,142 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,142 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,143 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,143 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,143 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:58,143 root INFO creating build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:58,144 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:58,144 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:58,144 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:58,144 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:37:58,145 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:37:58,145 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:58,145 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:58,145 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:37:58,146 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:37:58,146 root INFO copying BioSQL/py.typed -> build/lib.linux-armv8l-cpython-312/BioSQL 2026-01-27 01:37:58,153 root INFO running build_ext 2026-01-27 01:37:58,155 root INFO building 'Bio.Align._aligncore' extension 2026-01-27 01:37:58,155 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/Align 2026-01-27 01:37:58,155 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-armv8l-cpython-312/Bio/Align/_aligncore.o 2026-01-27 01:37:58,405 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Align/_aligncore.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:37:58,415 root INFO building 'Bio.Align._alignmentcounts' extension 2026-01-27 01:37:58,415 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-armv8l-cpython-312/Bio/Align/_alignmentcounts.o 2026-01-27 01:37:59,140 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Align/_alignmentcounts.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:37:59,151 root INFO building 'Bio.Align._codonaligner' extension 2026-01-27 01:37:59,151 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-armv8l-cpython-312/Bio/Align/_codonaligner.o 2026-01-27 01:37:59,658 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Align/_codonaligner.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:37:59,668 root INFO building 'Bio.Align._pairwisealigner' extension 2026-01-27 01:37:59,668 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.o 2026-01-27 01:38:06,497 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:06,509 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-01-27 01:38:06,509 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:06,509 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.o 2026-01-27 01:38:06,699 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:06,708 root INFO building 'Bio.cpairwise2' extension 2026-01-27 01:38:06,709 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-armv8l-cpython-312/Bio/cpairwise2module.o 2026-01-27 01:38:07,017 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/cpairwise2.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:07,026 root INFO building 'Bio.Nexus.cnexus' extension 2026-01-27 01:38:07,027 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/Nexus 2026-01-27 01:38:07,027 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-armv8l-cpython-312/Bio/Nexus/cnexus.o 2026-01-27 01:38:07,166 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Nexus/cnexus.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:07,175 root INFO building 'Bio.motifs._pwm' extension 2026-01-27 01:38:07,175 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/motifs 2026-01-27 01:38:07,176 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-armv8l-cpython-312/Bio/motifs/_pwm.o 2026-01-27 01:38:07,330 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/motifs/_pwm.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:07,339 root INFO building 'Bio.Cluster._cluster' extension 2026-01-27 01:38:07,340 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/Cluster 2026-01-27 01:38:07,340 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-armv8l-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:09,492 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armv8l-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:10,177 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/Cluster/cluster.o build/temp.linux-armv8l-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/Cluster/_cluster.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:10,188 root INFO building 'Bio.PDB.ccealign' extension 2026-01-27 01:38:10,188 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/PDB 2026-01-27 01:38:10,189 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-armv8l-cpython-312/Bio/PDB/ccealignmodule.o 2026-01-27 01:38:10,514 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/PDB/ccealign.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:10,524 root INFO building 'Bio.PDB.kdtrees' extension 2026-01-27 01:38:10,524 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-armv8l-cpython-312/Bio/PDB/kdtrees.o 2026-01-27 01:38:10,928 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/PDB/kdtrees.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:10,938 root INFO building 'Bio.PDB._bcif_helper' extension 2026-01-27 01:38:10,938 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-armv8l-cpython-312/Bio/PDB/bcifhelpermodule.o 2026-01-27 01:38:11,095 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/PDB/_bcif_helper.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:11,105 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-01-27 01:38:11,105 root INFO creating build/temp.linux-armv8l-cpython-312/Bio/SeqIO 2026-01-27 01:38:11,105 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-armv8l-cpython-312/Bio/SeqIO/_twoBitIO.o 2026-01-27 01:38:11,301 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-armv8l-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-armv8l-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-arm-linux-musleabihf.so 2026-01-27 01:38:11,318 root INFO installing to build/bdist.linux-armv8l/wheel 2026-01-27 01:38:11,318 root INFO running install 2026-01-27 01:38:11,328 root INFO running install_lib 2026-01-27 01:38:11,332 root INFO creating build/bdist.linux-armv8l/wheel 2026-01-27 01:38:11,332 root INFO creating build/bdist.linux-armv8l/wheel/BioSQL 2026-01-27 01:38:11,332 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/__init__.py -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,332 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,333 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/py.typed -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,333 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/Loader.py -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,333 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,333 root INFO copying build/lib.linux-armv8l-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-armv8l/wheel/./BioSQL 2026-01-27 01:38:11,334 root INFO creating build/bdist.linux-armv8l/wheel/Bio 2026-01-27 01:38:11,334 root INFO creating build/bdist.linux-armv8l/wheel/Bio/HMM 2026-01-27 01:38:11,334 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/HMM 2026-01-27 01:38:11,334 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,334 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Phylo 2026-01-27 01:38:11,335 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,335 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,335 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,335 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,336 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,336 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,336 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,336 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,336 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,337 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,337 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,337 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,337 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,337 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,338 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Phylo/PAML 2026-01-27 01:38:11,338 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,338 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,338 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,338 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,339 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,339 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,339 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,339 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,339 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:11,340 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,340 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-armv8l/wheel/./Bio/Phylo 2026-01-27 01:38:11,340 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Restriction 2026-01-27 01:38:11,340 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Restriction 2026-01-27 01:38:11,341 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-armv8l/wheel/./Bio/Restriction 2026-01-27 01:38:11,341 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-armv8l/wheel/./Bio/Restriction 2026-01-27 01:38:11,342 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-armv8l/wheel/./Bio/Restriction 2026-01-27 01:38:11,342 root INFO creating build/bdist.linux-armv8l/wheel/Bio/AlignIO 2026-01-27 01:38:11,342 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,343 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,343 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,343 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,343 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,343 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,344 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,344 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,344 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,344 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,344 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-armv8l/wheel/./Bio/AlignIO 2026-01-27 01:38:11,345 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Compass 2026-01-27 01:38:11,345 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Compass 2026-01-27 01:38:11,345 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Nexus 2026-01-27 01:38:11,345 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,346 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,346 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,346 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,346 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,347 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/cnexus.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,347 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-armv8l/wheel/./Bio/Nexus 2026-01-27 01:38:11,347 root INFO creating build/bdist.linux-armv8l/wheel/Bio/codonalign 2026-01-27 01:38:11,347 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/codonalign 2026-01-27 01:38:11,348 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-armv8l/wheel/./Bio/codonalign 2026-01-27 01:38:11,348 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-armv8l/wheel/./Bio/codonalign 2026-01-27 01:38:11,348 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Cluster 2026-01-27 01:38:11,348 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Cluster 2026-01-27 01:38:11,349 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-armv8l/wheel/./Bio/Cluster 2026-01-27 01:38:11,349 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-armv8l/wheel/./Bio/Cluster 2026-01-27 01:38:11,349 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-armv8l/wheel/./Bio/Cluster 2026-01-27 01:38:11,349 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Cluster/_cluster.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Cluster 2026-01-27 01:38:11,350 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Graphics 2026-01-27 01:38:11,350 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,350 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,351 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,351 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,351 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,351 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,352 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,352 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,352 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,352 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,352 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,353 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,353 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,353 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,353 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,353 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,354 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,354 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,354 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:11,354 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-armv8l/wheel/./Bio/Graphics 2026-01-27 01:38:11,355 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/File.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,355 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Sequencing 2026-01-27 01:38:11,355 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Sequencing 2026-01-27 01:38:11,355 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-armv8l/wheel/./Bio/Sequencing 2026-01-27 01:38:11,356 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-armv8l/wheel/./Bio/Sequencing 2026-01-27 01:38:11,356 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG 2026-01-27 01:38:11,356 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG 2026-01-27 01:38:11,356 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG/Gene 2026-01-27 01:38:11,356 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/Gene 2026-01-27 01:38:11,357 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG/KGML 2026-01-27 01:38:11,357 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:11,357 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:11,357 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:11,358 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG/Map 2026-01-27 01:38:11,358 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/Map 2026-01-27 01:38:11,358 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG/Compound 2026-01-27 01:38:11,358 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/Compound 2026-01-27 01:38:11,359 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG 2026-01-27 01:38:11,359 root INFO creating build/bdist.linux-armv8l/wheel/Bio/KEGG/Enzyme 2026-01-27 01:38:11,359 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/KEGG/Enzyme 2026-01-27 01:38:11,359 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/cpairwise2.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,359 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,360 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/bgzf.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,360 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Pathway 2026-01-27 01:38:11,360 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Pathway 2026-01-27 01:38:11,360 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Pathway/Rep 2026-01-27 01:38:11,361 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:11,361 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-armv8l/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:11,361 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-armv8l/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:11,361 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,362 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,363 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-armv8l/wheel/./Bio/SCOP 2026-01-27 01:38:11,363 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Seq.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,363 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Data 2026-01-27 01:38:11,363 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Data 2026-01-27 01:38:11,363 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-armv8l/wheel/./Bio/Data 2026-01-27 01:38:11,364 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-armv8l/wheel/./Bio/Data 2026-01-27 01:38:11,364 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-armv8l/wheel/./Bio/Data 2026-01-27 01:38:11,364 root INFO creating build/bdist.linux-armv8l/wheel/Bio/TogoWS 2026-01-27 01:38:11,364 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/TogoWS 2026-01-27 01:38:11,365 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Medline 2026-01-27 01:38:11,365 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Medline 2026-01-27 01:38:11,365 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Blast 2026-01-27 01:38:11,365 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Blast 2026-01-27 01:38:11,365 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-armv8l/wheel/./Bio/Blast 2026-01-27 01:38:11,366 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-armv8l/wheel/./Bio/Blast 2026-01-27 01:38:11,366 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-armv8l/wheel/./Bio/Blast 2026-01-27 01:38:11,366 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-armv8l/wheel/./Bio/Blast 2026-01-27 01:38:11,366 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/_utils.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,366 root INFO creating build/bdist.linux-armv8l/wheel/Bio/PopGen 2026-01-27 01:38:11,367 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/PopGen 2026-01-27 01:38:11,367 root INFO creating build/bdist.linux-armv8l/wheel/Bio/PopGen/GenePop 2026-01-27 01:38:11,367 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:11,367 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:11,367 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:11,368 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Emboss 2026-01-27 01:38:11,368 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Emboss 2026-01-27 01:38:11,368 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-armv8l/wheel/./Bio/Emboss 2026-01-27 01:38:11,368 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-armv8l/wheel/./Bio/Emboss 2026-01-27 01:38:11,368 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SwissProt 2026-01-27 01:38:11,368 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SwissProt 2026-01-27 01:38:11,369 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-armv8l/wheel/./Bio/SwissProt 2026-01-27 01:38:11,369 root INFO creating build/bdist.linux-armv8l/wheel/Bio/UniProt 2026-01-27 01:38:11,369 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/UniProt 2026-01-27 01:38:11,369 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-armv8l/wheel/./Bio/UniProt 2026-01-27 01:38:11,370 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO 2026-01-27 01:38:11,370 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO 2026-01-27 01:38:11,370 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:11,370 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:11,370 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:11,371 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO 2026-01-27 01:38:11,371 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/BlastIO 2026-01-27 01:38:11,371 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:11,371 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:11,371 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:11,372 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/_model 2026-01-27 01:38:11,372 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:11,372 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:11,372 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:11,372 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:11,372 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:11,373 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,373 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,373 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,373 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,373 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,374 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:11,374 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,374 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,374 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,374 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,375 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,375 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,375 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:11,375 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO 2026-01-27 01:38:11,375 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:11,376 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:11,376 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:11,376 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO 2026-01-27 01:38:11,376 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO 2026-01-27 01:38:11,376 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SearchIO/InfernalIO 2026-01-27 01:38:11,377 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:11,377 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:11,377 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:11,377 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-armv8l/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:11,377 root INFO creating build/bdist.linux-armv8l/wheel/Bio/CAPS 2026-01-27 01:38:11,378 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/CAPS 2026-01-27 01:38:11,378 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Affy 2026-01-27 01:38:11,378 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Affy 2026-01-27 01:38:11,378 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-armv8l/wheel/./Bio/Affy 2026-01-27 01:38:11,378 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SVDSuperimposer 2026-01-27 01:38:11,379 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SVDSuperimposer 2026-01-27 01:38:11,379 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SeqUtils 2026-01-27 01:38:11,379 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,379 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,379 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,380 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,380 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,380 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,380 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqUtils 2026-01-27 01:38:11,380 root INFO creating build/bdist.linux-armv8l/wheel/Bio/motifs 2026-01-27 01:38:11,381 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,381 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/_pwm.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,381 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,381 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,381 root INFO creating build/bdist.linux-armv8l/wheel/Bio/motifs/jaspar 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,382 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-armv8l/wheel/./Bio/motifs 2026-01-27 01:38:11,383 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,384 root INFO creating build/bdist.linux-armv8l/wheel/Bio/phenotype 2026-01-27 01:38:11,384 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/phenotype 2026-01-27 01:38:11,384 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-armv8l/wheel/./Bio/phenotype 2026-01-27 01:38:11,384 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-armv8l/wheel/./Bio/phenotype 2026-01-27 01:38:11,385 root INFO creating build/bdist.linux-armv8l/wheel/Bio/NMR 2026-01-27 01:38:11,385 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/NMR 2026-01-27 01:38:11,385 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-armv8l/wheel/./Bio/NMR 2026-01-27 01:38:11,385 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-armv8l/wheel/./Bio/NMR 2026-01-27 01:38:11,385 root INFO creating build/bdist.linux-armv8l/wheel/Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,386 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,387 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,387 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,387 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,387 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/_bcif_helper.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,387 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,388 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,389 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,390 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,390 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,390 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,390 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,391 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,392 root INFO creating build/bdist.linux-armv8l/wheel/Bio/PDB/mmtf 2026-01-27 01:38:11,392 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:11,392 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:11,392 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:11,392 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,392 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,393 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,393 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/ccealign.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,393 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,393 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,393 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,394 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,395 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/PDB/kdtrees.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/PDB 2026-01-27 01:38:11,395 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,395 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Entrez 2026-01-27 01:38:11,395 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Entrez 2026-01-27 01:38:11,396 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Entrez/XSDs 2026-01-27 01:38:11,396 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:11,396 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:11,396 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:11,396 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-armv8l/wheel/./Bio/Entrez 2026-01-27 01:38:11,397 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Entrez/DTDs 2026-01-27 01:38:11,397 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,397 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,397 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,397 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,397 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,398 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,398 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,398 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,398 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,398 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,399 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,400 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,400 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,400 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,400 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,400 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,401 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,402 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,403 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,404 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,405 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,406 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,406 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,406 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,406 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,406 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,407 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,408 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,409 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,410 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,410 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,410 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,410 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,410 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,411 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,411 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,411 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,411 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,411 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,412 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,413 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,414 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,415 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,416 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,417 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,417 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,417 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,417 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,417 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,418 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,418 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,418 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,418 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,418 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,419 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,419 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,419 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,419 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,419 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,420 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,421 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,421 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,421 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,421 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,421 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,422 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,423 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,423 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,423 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,423 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,424 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,424 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,424 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,424 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,424 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,425 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,426 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,426 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,426 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,426 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,426 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,427 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,428 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,428 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,428 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,428 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,428 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,429 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,430 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,430 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,430 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,430 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,430 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,431 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,432 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,433 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,433 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,433 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,433 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,433 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,434 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,435 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,435 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,435 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,435 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,435 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,436 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,437 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,437 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,437 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,437 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,437 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,438 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,439 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,440 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,441 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,441 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,441 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,441 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,442 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,443 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,444 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,445 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,446 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,447 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,447 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,447 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,447 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,447 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-armv8l/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:11,448 root INFO creating build/bdist.linux-armv8l/wheel/Bio/GenBank 2026-01-27 01:38:11,448 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/GenBank 2026-01-27 01:38:11,448 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-armv8l/wheel/./Bio/GenBank 2026-01-27 01:38:11,448 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-armv8l/wheel/./Bio/GenBank 2026-01-27 01:38:11,448 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-armv8l/wheel/./Bio/GenBank 2026-01-27 01:38:11,449 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/py.typed -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,449 root INFO creating build/bdist.linux-armv8l/wheel/Bio/SeqIO 2026-01-27 01:38:11,449 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,449 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,450 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,450 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,450 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,450 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,450 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,451 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,452 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,452 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,452 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,452 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,452 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,453 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,454 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-armv8l/wheel/./Bio/SeqIO 2026-01-27 01:38:11,454 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Geo 2026-01-27 01:38:11,454 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Geo 2026-01-27 01:38:11,454 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-armv8l/wheel/./Bio/Geo 2026-01-27 01:38:11,455 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Alphabet 2026-01-27 01:38:11,455 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Alphabet 2026-01-27 01:38:11,455 root INFO creating build/bdist.linux-armv8l/wheel/Bio/UniGene 2026-01-27 01:38:11,455 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/UniGene 2026-01-27 01:38:11,455 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Align 2026-01-27 01:38:11,455 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,456 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,456 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,456 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,456 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,457 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_alignmentcounts.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,457 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/chain.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,457 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/bed.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,457 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,458 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/psl.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,458 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,458 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/msf.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,458 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,459 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,459 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,459 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,459 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,459 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,460 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,460 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/sam.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,460 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Align/substitution_matrices 2026-01-27 01:38:11,460 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,460 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,461 root INFO creating build/bdist.linux-armv8l/wheel/Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,461 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,461 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,461 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,461 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,461 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,462 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,463 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,464 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,465 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-armv8l/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:11,466 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,466 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,466 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/maf.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,466 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_codonaligner.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,466 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,467 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,468 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,468 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/Align/_aligncore.cpython-312-arm-linux-musleabihf.so -> build/bdist.linux-armv8l/wheel/./Bio/Align 2026-01-27 01:38:11,468 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/pairwise2.py -> build/bdist.linux-armv8l/wheel/./Bio 2026-01-27 01:38:11,468 root INFO creating build/bdist.linux-armv8l/wheel/Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,469 root INFO copying build/lib.linux-armv8l-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-armv8l/wheel/./Bio/ExPASy 2026-01-27 01:38:11,470 root INFO running install_egg_info 2026-01-27 01:38:11,473 root INFO Copying biopython.egg-info to build/bdist.linux-armv8l/wheel/./biopython-1.86-py3.12.egg-info 2026-01-27 01:38:11,474 root INFO running install_scripts 2026-01-27 01:38:11,480 root INFO creating build/bdist.linux-armv8l/wheel/biopython-1.86.dist-info/WHEEL 2026-01-27 01:38:11,480 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.86/.dist/.tmp-1z4fi7a0/biopython-1.86-cp312-cp312-linux_armv8l.whl' and adding 'build/bdist.linux-armv8l/wheel' to it 2026-01-27 01:38:11,481 wheel INFO adding 'Bio/File.py' 2026-01-27 01:38:11,481 wheel INFO adding 'Bio/Seq.py' 2026-01-27 01:38:11,482 wheel INFO adding 'Bio/SeqFeature.py' 2026-01-27 01:38:11,482 wheel INFO adding 'Bio/SeqRecord.py' 2026-01-27 01:38:11,482 wheel INFO adding 'Bio/__init__.py' 2026-01-27 01:38:11,483 wheel INFO adding 'Bio/_utils.py' 2026-01-27 01:38:11,483 wheel INFO adding 'Bio/bgzf.py' 2026-01-27 01:38:11,483 wheel INFO adding 'Bio/cpairwise2.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,483 wheel INFO adding 'Bio/cpairwise2module.c' 2026-01-27 01:38:11,484 wheel INFO adding 'Bio/pairwise2.py' 2026-01-27 01:38:11,484 wheel INFO adding 'Bio/py.typed' 2026-01-27 01:38:11,484 wheel INFO adding 'Bio/Affy/CelFile.py' 2026-01-27 01:38:11,485 wheel INFO adding 'Bio/Affy/__init__.py' 2026-01-27 01:38:11,485 wheel INFO adding 'Bio/Align/AlignInfo.py' 2026-01-27 01:38:11,485 wheel INFO adding 'Bio/Align/__init__.py' 2026-01-27 01:38:11,486 wheel INFO adding 'Bio/Align/_aligncore.c' 2026-01-27 01:38:11,486 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,486 wheel INFO adding 'Bio/Align/_alignmentcounts.c' 2026-01-27 01:38:11,487 wheel INFO adding 'Bio/Align/_alignmentcounts.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,487 wheel INFO adding 'Bio/Align/_codonaligner.c' 2026-01-27 01:38:11,487 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,488 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2026-01-27 01:38:11,488 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,489 wheel INFO adding 'Bio/Align/_pairwisealigner.h' 2026-01-27 01:38:11,489 wheel INFO adding 'Bio/Align/a2m.py' 2026-01-27 01:38:11,489 wheel INFO adding 'Bio/Align/analysis.py' 2026-01-27 01:38:11,489 wheel INFO adding 'Bio/Align/bed.py' 2026-01-27 01:38:11,490 wheel INFO adding 'Bio/Align/bigbed.py' 2026-01-27 01:38:11,490 wheel INFO adding 'Bio/Align/bigmaf.py' 2026-01-27 01:38:11,490 wheel INFO adding 'Bio/Align/bigpsl.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/chain.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/clustal.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/emboss.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/exonerate.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/fasta.py' 2026-01-27 01:38:11,491 wheel INFO adding 'Bio/Align/hhr.py' 2026-01-27 01:38:11,492 wheel INFO adding 'Bio/Align/interfaces.py' 2026-01-27 01:38:11,492 wheel INFO adding 'Bio/Align/maf.py' 2026-01-27 01:38:11,492 wheel INFO adding 'Bio/Align/mauve.py' 2026-01-27 01:38:11,492 wheel INFO adding 'Bio/Align/msf.py' 2026-01-27 01:38:11,492 wheel INFO adding 'Bio/Align/nexus.py' 2026-01-27 01:38:11,493 wheel INFO adding 'Bio/Align/phylip.py' 2026-01-27 01:38:11,493 wheel INFO adding 'Bio/Align/psl.py' 2026-01-27 01:38:11,493 wheel INFO adding 'Bio/Align/sam.py' 2026-01-27 01:38:11,493 wheel INFO adding 'Bio/Align/stockholm.py' 2026-01-27 01:38:11,494 wheel INFO adding 'Bio/Align/tabular.py' 2026-01-27 01:38:11,494 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2026-01-27 01:38:11,494 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.c' 2026-01-27 01:38:11,494 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,494 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.h' 2026-01-27 01:38:11,495 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2026-01-27 01:38:11,495 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2026-01-27 01:38:11,495 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2026-01-27 01:38:11,495 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2026-01-27 01:38:11,495 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2026-01-27 01:38:11,496 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2026-01-27 01:38:11,497 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2026-01-27 01:38:11,498 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2026-01-27 01:38:11,499 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2026-01-27 01:38:11,499 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2026-01-27 01:38:11,499 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2026-01-27 01:38:11,499 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2026-01-27 01:38:11,499 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2026-01-27 01:38:11,500 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2026-01-27 01:38:11,500 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2026-01-27 01:38:11,500 wheel INFO adding 'Bio/AlignIO/FastaIO.py' 2026-01-27 01:38:11,500 wheel INFO adding 'Bio/AlignIO/Interfaces.py' 2026-01-27 01:38:11,500 wheel INFO adding 'Bio/AlignIO/MafIO.py' 2026-01-27 01:38:11,501 wheel INFO adding 'Bio/AlignIO/MauveIO.py' 2026-01-27 01:38:11,501 wheel INFO adding 'Bio/AlignIO/MsfIO.py' 2026-01-27 01:38:11,501 wheel INFO adding 'Bio/AlignIO/NexusIO.py' 2026-01-27 01:38:11,501 wheel INFO adding 'Bio/AlignIO/PhylipIO.py' 2026-01-27 01:38:11,502 wheel INFO adding 'Bio/AlignIO/StockholmIO.py' 2026-01-27 01:38:11,502 wheel INFO adding 'Bio/AlignIO/__init__.py' 2026-01-27 01:38:11,502 wheel INFO adding 'Bio/Alphabet/__init__.py' 2026-01-27 01:38:11,502 wheel INFO adding 'Bio/Blast/NCBIWWW.py' 2026-01-27 01:38:11,503 wheel INFO adding 'Bio/Blast/NCBIXML.py' 2026-01-27 01:38:11,503 wheel INFO adding 'Bio/Blast/__init__.py' 2026-01-27 01:38:11,503 wheel INFO adding 'Bio/Blast/_parser.py' 2026-01-27 01:38:11,504 wheel INFO adding 'Bio/Blast/_writers.py' 2026-01-27 01:38:11,504 wheel INFO adding 'Bio/CAPS/__init__.py' 2026-01-27 01:38:11,504 wheel INFO adding 'Bio/Cluster/__init__.py' 2026-01-27 01:38:11,504 wheel INFO adding 'Bio/Cluster/_cluster.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,505 wheel INFO adding 'Bio/Cluster/cluster.c' 2026-01-27 01:38:11,505 wheel INFO adding 'Bio/Cluster/cluster.h' 2026-01-27 01:38:11,506 wheel INFO adding 'Bio/Cluster/clustermodule.c' 2026-01-27 01:38:11,506 wheel INFO adding 'Bio/Compass/__init__.py' 2026-01-27 01:38:11,506 wheel INFO adding 'Bio/Data/CodonTable.py' 2026-01-27 01:38:11,507 wheel INFO adding 'Bio/Data/IUPACData.py' 2026-01-27 01:38:11,507 wheel INFO adding 'Bio/Data/PDBData.py' 2026-01-27 01:38:11,507 wheel INFO adding 'Bio/Data/__init__.py' 2026-01-27 01:38:11,507 wheel INFO adding 'Bio/Emboss/Primer3.py' 2026-01-27 01:38:11,507 wheel INFO adding 'Bio/Emboss/PrimerSearch.py' 2026-01-27 01:38:11,508 wheel INFO adding 'Bio/Emboss/__init__.py' 2026-01-27 01:38:11,508 wheel INFO adding 'Bio/Entrez/Parser.py' 2026-01-27 01:38:11,508 wheel INFO adding 'Bio/Entrez/__init__.py' 2026-01-27 01:38:11,509 wheel INFO adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' 2026-01-27 01:38:11,509 wheel INFO adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' 2026-01-27 01:38:11,509 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' 2026-01-27 01:38:11,509 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' 2026-01-27 01:38:11,510 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' 2026-01-27 01:38:11,510 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' 2026-01-27 01:38:11,510 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' 2026-01-27 01:38:11,510 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' 2026-01-27 01:38:11,511 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' 2026-01-27 01:38:11,511 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' 2026-01-27 01:38:11,511 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' 2026-01-27 01:38:11,511 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.dtd' 2026-01-27 01:38:11,512 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd' 2026-01-27 01:38:11,513 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd' 2026-01-27 01:38:11,513 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd' 2026-01-27 01:38:11,513 wheel INFO adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent' 2026-01-27 01:38:11,513 wheel INFO adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent' 2026-01-27 01:38:11,514 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd' 2026-01-27 01:38:11,514 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent' 2026-01-27 01:38:11,514 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent' 2026-01-27 01:38:11,514 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent' 2026-01-27 01:38:11,515 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent' 2026-01-27 01:38:11,515 wheel INFO adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent' 2026-01-27 01:38:11,516 wheel INFO adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent' 2026-01-27 01:38:11,516 wheel INFO adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent' 2026-01-27 01:38:11,516 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent' 2026-01-27 01:38:11,517 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common1-3.ent' 2026-01-27 01:38:11,517 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent' 2026-01-27 01:38:11,518 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent' 2026-01-27 01:38:11,518 wheel INFO adding 'Bio/Entrez/DTDs/JATS-display1-3.ent' 2026-01-27 01:38:11,518 wheel INFO adding 'Bio/Entrez/DTDs/JATS-format1-3.ent' 2026-01-27 01:38:11,519 wheel INFO adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent' 2026-01-27 01:38:11,519 wheel INFO adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent' 2026-01-27 01:38:11,519 wheel INFO adding 'Bio/Entrez/DTDs/JATS-link1-3.ent' 2026-01-27 01:38:11,519 wheel INFO adding 'Bio/Entrez/DTDs/JATS-list1-3.ent' 2026-01-27 01:38:11,520 wheel INFO adding 'Bio/Entrez/DTDs/JATS-math1-3.ent' 2026-01-27 01:38:11,520 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent' 2026-01-27 01:38:11,520 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent' 2026-01-27 01:38:11,520 wheel INFO adding 'Bio/Entrez/DTDs/JATS-modules1-3.ent' 2026-01-27 01:38:11,521 wheel INFO adding 'Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent' 2026-01-27 01:38:11,521 wheel INFO adding 'Bio/Entrez/DTDs/JATS-notat1-3.ent' 2026-01-27 01:38:11,521 wheel INFO adding 'Bio/Entrez/DTDs/JATS-para1-3.ent' 2026-01-27 01:38:11,521 wheel INFO adding 'Bio/Entrez/DTDs/JATS-phrase1-3.ent' 2026-01-27 01:38:11,522 wheel INFO adding 'Bio/Entrez/DTDs/JATS-references1-3.ent' 2026-01-27 01:38:11,522 wheel INFO adding 'Bio/Entrez/DTDs/JATS-related-object1-3.ent' 2026-01-27 01:38:11,522 wheel INFO adding 'Bio/Entrez/DTDs/JATS-section1-3.ent' 2026-01-27 01:38:11,523 wheel INFO adding 'Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent' 2026-01-27 01:38:11,523 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.dtd' 2026-01-27 01:38:11,523 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.mod.dtd' 2026-01-27 01:38:11,523 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd' 2026-01-27 01:38:11,523 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd' 2026-01-27 01:38:11,524 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.dtd' 2026-01-27 01:38:11,524 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.mod.dtd' 2026-01-27 01:38:11,524 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.dtd' 2026-01-27 01:38:11,524 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd' 2026-01-27 01:38:11,524 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.mod.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd' 2026-01-27 01:38:11,525 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.dtd' 2026-01-27 01:38:11,526 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd' 2026-01-27 01:38:11,526 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.dtd' 2026-01-27 01:38:11,526 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd' 2026-01-27 01:38:11,526 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.dtd' 2026-01-27 01:38:11,526 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd' 2026-01-27 01:38:11,527 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.dtd' 2026-01-27 01:38:11,527 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd' 2026-01-27 01:38:11,527 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.dtd' 2026-01-27 01:38:11,527 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd' 2026-01-27 01:38:11,527 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.dtd' 2026-01-27 01:38:11,528 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd' 2026-01-27 01:38:11,528 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entity.mod.dtd' 2026-01-27 01:38:11,528 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.dtd' 2026-01-27 01:38:11,528 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd' 2026-01-27 01:38:11,529 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.dtd' 2026-01-27 01:38:11,529 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.mod.dtd' 2026-01-27 01:38:11,530 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.dtd' 2026-01-27 01:38:11,531 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.mod.dtd' 2026-01-27 01:38:11,531 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.dtd' 2026-01-27 01:38:11,531 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd' 2026-01-27 01:38:11,531 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.dtd' 2026-01-27 01:38:11,531 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd' 2026-01-27 01:38:11,532 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.dtd' 2026-01-27 01:38:11,532 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd' 2026-01-27 01:38:11,532 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.dtd' 2026-01-27 01:38:11,532 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd' 2026-01-27 01:38:11,532 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.mod.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.mod.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.mod.dtd' 2026-01-27 01:38:11,533 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.dtd' 2026-01-27 01:38:11,534 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd' 2026-01-27 01:38:11,534 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.dtd' 2026-01-27 01:38:11,534 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.mod.dtd' 2026-01-27 01:38:11,534 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.dtd' 2026-01-27 01:38:11,534 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd' 2026-01-27 01:38:11,535 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.dtd' 2026-01-27 01:38:11,535 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd' 2026-01-27 01:38:11,535 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.dtd' 2026-01-27 01:38:11,535 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.mod.dtd' 2026-01-27 01:38:11,535 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.mod.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.mod.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd' 2026-01-27 01:38:11,536 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.mod.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.mod.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd' 2026-01-27 01:38:11,537 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.dtd' 2026-01-27 01:38:11,538 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd' 2026-01-27 01:38:11,538 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.dtd' 2026-01-27 01:38:11,538 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd' 2026-01-27 01:38:11,538 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.dtd' 2026-01-27 01:38:11,538 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd' 2026-01-27 01:38:11,539 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.dtd' 2026-01-27 01:38:11,539 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd' 2026-01-27 01:38:11,539 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.dtd' 2026-01-27 01:38:11,539 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd' 2026-01-27 01:38:11,539 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.dtd' 2026-01-27 01:38:11,540 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd' 2026-01-27 01:38:11,540 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.dtd' 2026-01-27 01:38:11,540 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd' 2026-01-27 01:38:11,540 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.dtd' 2026-01-27 01:38:11,540 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd' 2026-01-27 01:38:11,541 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.dtd' 2026-01-27 01:38:11,541 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd' 2026-01-27 01:38:11,541 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.dtd' 2026-01-27 01:38:11,541 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd' 2026-01-27 01:38:11,541 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.mod.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Systems.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.dtd' 2026-01-27 01:38:11,542 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd' 2026-01-27 01:38:11,543 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.dtd' 2026-01-27 01:38:11,543 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.mod.dtd' 2026-01-27 01:38:11,543 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_all.dtd' 2026-01-27 01:38:11,543 wheel INFO adding 'Bio/Entrez/DTDs/NSE.dtd' 2026-01-27 01:38:11,544 wheel INFO adding 'Bio/Entrez/DTDs/NSE.mod.dtd' 2026-01-27 01:38:11,544 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.dtd' 2026-01-27 01:38:11,544 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.mod.dtd' 2026-01-27 01:38:11,544 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.dtd' 2026-01-27 01:38:11,544 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.mod.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.mod.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.mod.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.dtd' 2026-01-27 01:38:11,545 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.mod.dtd' 2026-01-27 01:38:11,546 wheel INFO adding 'Bio/Entrez/DTDs/XHTMLtablesetup.ent' 2026-01-27 01:38:11,546 wheel INFO adding 'Bio/Entrez/DTDs/archivearticle.dtd' 2026-01-27 01:38:11,546 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-classes.ent' 2026-01-27 01:38:11,546 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-mixes.ent' 2026-01-27 01:38:11,547 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-models.ent' 2026-01-27 01:38:11,547 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-modules.ent' 2026-01-27 01:38:11,547 wheel INFO adding 'Bio/Entrez/DTDs/articlemeta.ent' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/backmatter.ent' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_100301.dtd' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_110101.dtd' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_120101.dtd' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_130101.dtd' 2026-01-27 01:38:11,548 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_140101.dtd' 2026-01-27 01:38:11,549 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_150101.dtd' 2026-01-27 01:38:11,549 wheel INFO adding 'Bio/Entrez/DTDs/chars.ent' 2026-01-27 01:38:11,549 wheel INFO adding 'Bio/Entrez/DTDs/common.ent' 2026-01-27 01:38:11,550 wheel INFO adding 'Bio/Entrez/DTDs/default-classes.ent' 2026-01-27 01:38:11,550 wheel INFO adding 'Bio/Entrez/DTDs/default-mixes.ent' 2026-01-27 01:38:11,550 wheel INFO adding 'Bio/Entrez/DTDs/display.ent' 2026-01-27 01:38:11,550 wheel INFO adding 'Bio/Entrez/DTDs/eInfo_020511.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/eLink_090910.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/eLink_101123.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/ePost_020511.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/eSearch_020511.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/eSpell.dtd' 2026-01-27 01:38:11,551 wheel INFO adding 'Bio/Entrez/DTDs/eSummary_041029.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/egquery.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/einfo.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/elink.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/elink_020122.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/epost.dtd' 2026-01-27 01:38:11,552 wheel INFO adding 'Bio/Entrez/DTDs/esearch.dtd' 2026-01-27 01:38:11,553 wheel INFO adding 'Bio/Entrez/DTDs/esummary-v1.dtd' 2026-01-27 01:38:11,553 wheel INFO adding 'Bio/Entrez/DTDs/esummary_clinvar.dtd' 2026-01-27 01:38:11,553 wheel INFO adding 'Bio/Entrez/DTDs/esummary_gene.dtd' 2026-01-27 01:38:11,553 wheel INFO adding 'Bio/Entrez/DTDs/format.ent' 2026-01-27 01:38:11,553 wheel INFO adding 'Bio/Entrez/DTDs/htmltable.dtd' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamsa.ent' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamsb.ent' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamsc.ent' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamsn.ent' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamso.ent' 2026-01-27 01:38:11,554 wheel INFO adding 'Bio/Entrez/DTDs/isoamsr.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isobox.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isocyr1.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isocyr2.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isodia.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isogrk1.ent' 2026-01-27 01:38:11,555 wheel INFO adding 'Bio/Entrez/DTDs/isogrk2.ent' 2026-01-27 01:38:11,556 wheel INFO adding 'Bio/Entrez/DTDs/isogrk3.ent' 2026-01-27 01:38:11,556 wheel INFO adding 'Bio/Entrez/DTDs/isogrk4.ent' 2026-01-27 01:38:11,556 wheel INFO adding 'Bio/Entrez/DTDs/isolat1.ent' 2026-01-27 01:38:11,556 wheel INFO adding 'Bio/Entrez/DTDs/isolat2.ent' 2026-01-27 01:38:11,556 wheel INFO adding 'Bio/Entrez/DTDs/isomfrk.ent' 2026-01-27 01:38:11,557 wheel INFO adding 'Bio/Entrez/DTDs/isomopf.ent' 2026-01-27 01:38:11,557 wheel INFO adding 'Bio/Entrez/DTDs/isomscr.ent' 2026-01-27 01:38:11,557 wheel INFO adding 'Bio/Entrez/DTDs/isonum.ent' 2026-01-27 01:38:11,557 wheel INFO adding 'Bio/Entrez/DTDs/isopub.ent' 2026-01-27 01:38:11,557 wheel INFO adding 'Bio/Entrez/DTDs/isotech.ent' 2026-01-27 01:38:11,558 wheel INFO adding 'Bio/Entrez/DTDs/journalmeta.ent' 2026-01-27 01:38:11,558 wheel INFO adding 'Bio/Entrez/DTDs/link.ent' 2026-01-27 01:38:11,558 wheel INFO adding 'Bio/Entrez/DTDs/list.ent' 2026-01-27 01:38:11,558 wheel INFO adding 'Bio/Entrez/DTDs/math.ent' 2026-01-27 01:38:11,559 wheel INFO adding 'Bio/Entrez/DTDs/mathml-in-pubmed.mod' 2026-01-27 01:38:11,559 wheel INFO adding 'Bio/Entrez/DTDs/mathml2-qname-1.mod' 2026-01-27 01:38:11,559 wheel INFO adding 'Bio/Entrez/DTDs/mathml2.dtd' 2026-01-27 01:38:11,559 wheel INFO adding 'Bio/Entrez/DTDs/mathml3-qname1.mod' 2026-01-27 01:38:11,560 wheel INFO adding 'Bio/Entrez/DTDs/mathml3.dtd' 2026-01-27 01:38:11,560 wheel INFO adding 'Bio/Entrez/DTDs/mathmlsetup.ent' 2026-01-27 01:38:11,560 wheel INFO adding 'Bio/Entrez/DTDs/mmlalias.ent' 2026-01-27 01:38:11,560 wheel INFO adding 'Bio/Entrez/DTDs/mmlextra.ent' 2026-01-27 01:38:11,561 wheel INFO adding 'Bio/Entrez/DTDs/modules.ent' 2026-01-27 01:38:11,561 wheel INFO adding 'Bio/Entrez/DTDs/nlm-articleset-2.0.dtd' 2026-01-27 01:38:11,561 wheel INFO adding 'Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd' 2026-01-27 01:38:11,561 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_011101.dtd' 2026-01-27 01:38:11,561 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_080101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_090101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_011101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_080101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_090101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd' 2026-01-27 01:38:11,562 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd' 2026-01-27 01:38:11,563 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd' 2026-01-27 01:38:11,563 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd' 2026-01-27 01:38:11,563 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd' 2026-01-27 01:38:11,563 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd' 2026-01-27 01:38:11,563 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_080101.dtd' 2026-01-27 01:38:11,564 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_100101.dtd' 2026-01-27 01:38:11,565 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd' 2026-01-27 01:38:11,565 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd' 2026-01-27 01:38:11,565 wheel INFO adding 'Bio/Entrez/DTDs/notat.ent' 2026-01-27 01:38:11,565 wheel INFO adding 'Bio/Entrez/DTDs/para.ent' 2026-01-27 01:38:11,565 wheel INFO adding 'Bio/Entrez/DTDs/phrase.ent' 2026-01-27 01:38:11,566 wheel INFO adding 'Bio/Entrez/DTDs/pmc-1.dtd' 2026-01-27 01:38:11,566 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_020114.dtd' 2026-01-27 01:38:11,566 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_080101.dtd' 2026-01-27 01:38:11,566 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_090101.dtd' 2026-01-27 01:38:11,566 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100101.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100301.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_110101.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_120101.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130101.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130501.dtd' 2026-01-27 01:38:11,567 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_140101.dtd' 2026-01-27 01:38:11,568 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_150101.dtd' 2026-01-27 01:38:11,568 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180101.dtd' 2026-01-27 01:38:11,568 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180601.dtd' 2026-01-27 01:38:11,568 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_190101.dtd' 2026-01-27 01:38:11,568 wheel INFO adding 'Bio/Entrez/DTDs/references.ent' 2026-01-27 01:38:11,569 wheel INFO adding 'Bio/Entrez/DTDs/section.ent' 2026-01-27 01:38:11,569 wheel INFO adding 'Bio/Entrez/DTDs/taxon.dtd' 2026-01-27 01:38:11,569 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-inlstyle-1.mod' 2026-01-27 01:38:11,569 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-table-1.mod' 2026-01-27 01:38:11,569 wheel INFO adding 'Bio/Entrez/DTDs/xmlspecchars.ent' 2026-01-27 01:38:11,570 wheel INFO adding 'Bio/Entrez/XSDs/IPGReportSet.xsd' 2026-01-27 01:38:11,570 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd' 2026-01-27 01:38:11,570 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd' 2026-01-27 01:38:11,570 wheel INFO adding 'Bio/ExPASy/Enzyme.py' 2026-01-27 01:38:11,570 wheel INFO adding 'Bio/ExPASy/Prodoc.py' 2026-01-27 01:38:11,571 wheel INFO adding 'Bio/ExPASy/Prosite.py' 2026-01-27 01:38:11,571 wheel INFO adding 'Bio/ExPASy/ScanProsite.py' 2026-01-27 01:38:11,571 wheel INFO adding 'Bio/ExPASy/__init__.py' 2026-01-27 01:38:11,571 wheel INFO adding 'Bio/ExPASy/cellosaurus.py' 2026-01-27 01:38:11,571 wheel INFO adding 'Bio/GenBank/Record.py' 2026-01-27 01:38:11,572 wheel INFO adding 'Bio/GenBank/Scanner.py' 2026-01-27 01:38:11,572 wheel INFO adding 'Bio/GenBank/__init__.py' 2026-01-27 01:38:11,572 wheel INFO adding 'Bio/GenBank/utils.py' 2026-01-27 01:38:11,572 wheel INFO adding 'Bio/Geo/Record.py' 2026-01-27 01:38:11,573 wheel INFO adding 'Bio/Geo/__init__.py' 2026-01-27 01:38:11,573 wheel INFO adding 'Bio/Graphics/BasicChromosome.py' 2026-01-27 01:38:11,573 wheel INFO adding 'Bio/Graphics/ColorSpiral.py' 2026-01-27 01:38:11,573 wheel INFO adding 'Bio/Graphics/Comparative.py' 2026-01-27 01:38:11,574 wheel INFO adding 'Bio/Graphics/DisplayRepresentation.py' 2026-01-27 01:38:11,574 wheel INFO adding 'Bio/Graphics/Distribution.py' 2026-01-27 01:38:11,574 wheel INFO adding 'Bio/Graphics/KGML_vis.py' 2026-01-27 01:38:11,574 wheel INFO adding 'Bio/Graphics/__init__.py' 2026-01-27 01:38:11,574 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_AbstractDrawer.py' 2026-01-27 01:38:11,575 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CircularDrawer.py' 2026-01-27 01:38:11,575 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Colors.py' 2026-01-27 01:38:11,575 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CrossLink.py' 2026-01-27 01:38:11,575 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Diagram.py' 2026-01-27 01:38:11,575 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Feature.py' 2026-01-27 01:38:11,576 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_FeatureSet.py' 2026-01-27 01:38:11,576 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Graph.py' 2026-01-27 01:38:11,576 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_GraphSet.py' 2026-01-27 01:38:11,576 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_LinearDrawer.py' 2026-01-27 01:38:11,577 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Track.py' 2026-01-27 01:38:11,577 wheel INFO adding 'Bio/Graphics/GenomeDiagram/__init__.py' 2026-01-27 01:38:11,577 wheel INFO adding 'Bio/HMM/__init__.py' 2026-01-27 01:38:11,577 wheel INFO adding 'Bio/KEGG/REST.py' 2026-01-27 01:38:11,577 wheel INFO adding 'Bio/KEGG/__init__.py' 2026-01-27 01:38:11,578 wheel INFO adding 'Bio/KEGG/Compound/__init__.py' 2026-01-27 01:38:11,578 wheel INFO adding 'Bio/KEGG/Enzyme/__init__.py' 2026-01-27 01:38:11,578 wheel INFO adding 'Bio/KEGG/Gene/__init__.py' 2026-01-27 01:38:11,578 wheel INFO adding 'Bio/KEGG/KGML/KGML_parser.py' 2026-01-27 01:38:11,578 wheel INFO adding 'Bio/KEGG/KGML/KGML_pathway.py' 2026-01-27 01:38:11,579 wheel INFO adding 'Bio/KEGG/KGML/__init__.py' 2026-01-27 01:38:11,579 wheel INFO adding 'Bio/KEGG/Map/__init__.py' 2026-01-27 01:38:11,579 wheel INFO adding 'Bio/Medline/__init__.py' 2026-01-27 01:38:11,579 wheel INFO adding 'Bio/NMR/NOEtools.py' 2026-01-27 01:38:11,579 wheel INFO adding 'Bio/NMR/__init__.py' 2026-01-27 01:38:11,580 wheel INFO adding 'Bio/NMR/xpktools.py' 2026-01-27 01:38:11,580 wheel INFO adding 'Bio/Nexus/Nexus.py' 2026-01-27 01:38:11,580 wheel INFO adding 'Bio/Nexus/Nodes.py' 2026-01-27 01:38:11,580 wheel INFO adding 'Bio/Nexus/StandardData.py' 2026-01-27 01:38:11,581 wheel INFO adding 'Bio/Nexus/Trees.py' 2026-01-27 01:38:11,581 wheel INFO adding 'Bio/Nexus/__init__.py' 2026-01-27 01:38:11,581 wheel INFO adding 'Bio/Nexus/cnexus.c' 2026-01-27 01:38:11,581 wheel INFO adding 'Bio/Nexus/cnexus.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,582 wheel INFO adding 'Bio/PDB/AbstractPropertyMap.py' 2026-01-27 01:38:11,582 wheel INFO adding 'Bio/PDB/Atom.py' 2026-01-27 01:38:11,582 wheel INFO adding 'Bio/PDB/Chain.py' 2026-01-27 01:38:11,582 wheel INFO adding 'Bio/PDB/DSSP.py' 2026-01-27 01:38:11,582 wheel INFO adding 'Bio/PDB/Dice.py' 2026-01-27 01:38:11,583 wheel INFO adding 'Bio/PDB/Entity.py' 2026-01-27 01:38:11,583 wheel INFO adding 'Bio/PDB/FragmentMapper.py' 2026-01-27 01:38:11,583 wheel INFO adding 'Bio/PDB/HSExposure.py' 2026-01-27 01:38:11,583 wheel INFO adding 'Bio/PDB/MMCIF2Dict.py' 2026-01-27 01:38:11,583 wheel INFO adding 'Bio/PDB/MMCIFParser.py' 2026-01-27 01:38:11,584 wheel INFO adding 'Bio/PDB/Model.py' 2026-01-27 01:38:11,584 wheel INFO adding 'Bio/PDB/NACCESS.py' 2026-01-27 01:38:11,584 wheel INFO adding 'Bio/PDB/NeighborSearch.py' 2026-01-27 01:38:11,584 wheel INFO adding 'Bio/PDB/PDBExceptions.py' 2026-01-27 01:38:11,584 wheel INFO adding 'Bio/PDB/PDBIO.py' 2026-01-27 01:38:11,585 wheel INFO adding 'Bio/PDB/PDBList.py' 2026-01-27 01:38:11,585 wheel INFO adding 'Bio/PDB/PDBMLParser.py' 2026-01-27 01:38:11,585 wheel INFO adding 'Bio/PDB/PDBParser.py' 2026-01-27 01:38:11,585 wheel INFO adding 'Bio/PDB/PICIO.py' 2026-01-27 01:38:11,585 wheel INFO adding 'Bio/PDB/PSEA.py' 2026-01-27 01:38:11,586 wheel INFO adding 'Bio/PDB/Polypeptide.py' 2026-01-27 01:38:11,586 wheel INFO adding 'Bio/PDB/Residue.py' 2026-01-27 01:38:11,586 wheel INFO adding 'Bio/PDB/ResidueDepth.py' 2026-01-27 01:38:11,586 wheel INFO adding 'Bio/PDB/SASA.py' 2026-01-27 01:38:11,586 wheel INFO adding 'Bio/PDB/SCADIO.py' 2026-01-27 01:38:11,587 wheel INFO adding 'Bio/PDB/Selection.py' 2026-01-27 01:38:11,587 wheel INFO adding 'Bio/PDB/Structure.py' 2026-01-27 01:38:11,587 wheel INFO adding 'Bio/PDB/StructureAlignment.py' 2026-01-27 01:38:11,587 wheel INFO adding 'Bio/PDB/StructureBuilder.py' 2026-01-27 01:38:11,587 wheel INFO adding 'Bio/PDB/Superimposer.py' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/__init__.py' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/_bcif_helper.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/alphafold_db.py' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/bcifhelpermodule.c' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/binary_cif.py' 2026-01-27 01:38:11,588 wheel INFO adding 'Bio/PDB/ccealign.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,589 wheel INFO adding 'Bio/PDB/ccealignmodule.c' 2026-01-27 01:38:11,589 wheel INFO adding 'Bio/PDB/cealign.py' 2026-01-27 01:38:11,589 wheel INFO adding 'Bio/PDB/ic_data.py' 2026-01-27 01:38:11,589 wheel INFO adding 'Bio/PDB/ic_rebuild.py' 2026-01-27 01:38:11,590 wheel INFO adding 'Bio/PDB/internal_coords.py' 2026-01-27 01:38:11,590 wheel INFO adding 'Bio/PDB/kdtrees.c' 2026-01-27 01:38:11,591 wheel INFO adding 'Bio/PDB/kdtrees.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,591 wheel INFO adding 'Bio/PDB/mmcifio.py' 2026-01-27 01:38:11,591 wheel INFO adding 'Bio/PDB/parse_pdb_header.py' 2026-01-27 01:38:11,591 wheel INFO adding 'Bio/PDB/qcprot.py' 2026-01-27 01:38:11,592 wheel INFO adding 'Bio/PDB/vectors.py' 2026-01-27 01:38:11,592 wheel INFO adding 'Bio/PDB/mmtf/DefaultParser.py' 2026-01-27 01:38:11,592 wheel INFO adding 'Bio/PDB/mmtf/__init__.py' 2026-01-27 01:38:11,592 wheel INFO adding 'Bio/PDB/mmtf/mmtfio.py' 2026-01-27 01:38:11,592 wheel INFO adding 'Bio/Pathway/__init__.py' 2026-01-27 01:38:11,593 wheel INFO adding 'Bio/Pathway/Rep/Graph.py' 2026-01-27 01:38:11,593 wheel INFO adding 'Bio/Pathway/Rep/MultiGraph.py' 2026-01-27 01:38:11,593 wheel INFO adding 'Bio/Pathway/Rep/__init__.py' 2026-01-27 01:38:11,593 wheel INFO adding 'Bio/Phylo/BaseTree.py' 2026-01-27 01:38:11,594 wheel INFO adding 'Bio/Phylo/CDAO.py' 2026-01-27 01:38:11,594 wheel INFO adding 'Bio/Phylo/CDAOIO.py' 2026-01-27 01:38:11,594 wheel INFO adding 'Bio/Phylo/Consensus.py' 2026-01-27 01:38:11,594 wheel INFO adding 'Bio/Phylo/NeXML.py' 2026-01-27 01:38:11,594 wheel INFO adding 'Bio/Phylo/NeXMLIO.py' 2026-01-27 01:38:11,595 wheel INFO adding 'Bio/Phylo/Newick.py' 2026-01-27 01:38:11,595 wheel INFO adding 'Bio/Phylo/NewickIO.py' 2026-01-27 01:38:11,595 wheel INFO adding 'Bio/Phylo/NexusIO.py' 2026-01-27 01:38:11,595 wheel INFO adding 'Bio/Phylo/PhyloXML.py' 2026-01-27 01:38:11,595 wheel INFO adding 'Bio/Phylo/PhyloXMLIO.py' 2026-01-27 01:38:11,596 wheel INFO adding 'Bio/Phylo/TreeConstruction.py' 2026-01-27 01:38:11,596 wheel INFO adding 'Bio/Phylo/__init__.py' 2026-01-27 01:38:11,596 wheel INFO adding 'Bio/Phylo/_cdao_owl.py' 2026-01-27 01:38:11,597 wheel INFO adding 'Bio/Phylo/_io.py' 2026-01-27 01:38:11,597 wheel INFO adding 'Bio/Phylo/_utils.py' 2026-01-27 01:38:11,597 wheel INFO adding 'Bio/Phylo/PAML/__init__.py' 2026-01-27 01:38:11,597 wheel INFO adding 'Bio/Phylo/PAML/_paml.py' 2026-01-27 01:38:11,597 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py' 2026-01-27 01:38:11,598 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py' 2026-01-27 01:38:11,598 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py' 2026-01-27 01:38:11,598 wheel INFO adding 'Bio/Phylo/PAML/baseml.py' 2026-01-27 01:38:11,598 wheel INFO adding 'Bio/Phylo/PAML/chi2.py' 2026-01-27 01:38:11,598 wheel INFO adding 'Bio/Phylo/PAML/codeml.py' 2026-01-27 01:38:11,599 wheel INFO adding 'Bio/Phylo/PAML/yn00.py' 2026-01-27 01:38:11,599 wheel INFO adding 'Bio/PopGen/__init__.py' 2026-01-27 01:38:11,599 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py' 2026-01-27 01:38:11,599 wheel INFO adding 'Bio/PopGen/GenePop/LargeFileParser.py' 2026-01-27 01:38:11,599 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py' 2026-01-27 01:38:11,600 wheel INFO adding 'Bio/Restriction/PrintFormat.py' 2026-01-27 01:38:11,600 wheel INFO adding 'Bio/Restriction/Restriction.py' 2026-01-27 01:38:11,601 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py' 2026-01-27 01:38:11,602 wheel INFO adding 'Bio/Restriction/__init__.py' 2026-01-27 01:38:11,602 wheel INFO adding 'Bio/SCOP/Cla.py' 2026-01-27 01:38:11,602 wheel INFO adding 'Bio/SCOP/Des.py' 2026-01-27 01:38:11,603 wheel INFO adding 'Bio/SCOP/Dom.py' 2026-01-27 01:38:11,603 wheel INFO adding 'Bio/SCOP/Hie.py' 2026-01-27 01:38:11,603 wheel INFO adding 'Bio/SCOP/Raf.py' 2026-01-27 01:38:11,603 wheel INFO adding 'Bio/SCOP/Residues.py' 2026-01-27 01:38:11,603 wheel INFO adding 'Bio/SCOP/__init__.py' 2026-01-27 01:38:11,604 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py' 2026-01-27 01:38:11,604 wheel INFO adding 'Bio/SearchIO/BlatIO.py' 2026-01-27 01:38:11,604 wheel INFO adding 'Bio/SearchIO/FastaIO.py' 2026-01-27 01:38:11,604 wheel INFO adding 'Bio/SearchIO/__init__.py' 2026-01-27 01:38:11,605 wheel INFO adding 'Bio/SearchIO/_index.py' 2026-01-27 01:38:11,605 wheel INFO adding 'Bio/SearchIO/_utils.py' 2026-01-27 01:38:11,605 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py' 2026-01-27 01:38:11,605 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py' 2026-01-27 01:38:11,606 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py' 2026-01-27 01:38:11,606 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py' 2026-01-27 01:38:11,606 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py' 2026-01-27 01:38:11,606 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py' 2026-01-27 01:38:11,607 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py' 2026-01-27 01:38:11,607 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py' 2026-01-27 01:38:11,607 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py' 2026-01-27 01:38:11,607 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py' 2026-01-27 01:38:11,607 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py' 2026-01-27 01:38:11,608 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py' 2026-01-27 01:38:11,608 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py' 2026-01-27 01:38:11,608 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py' 2026-01-27 01:38:11,608 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py' 2026-01-27 01:38:11,609 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py' 2026-01-27 01:38:11,609 wheel INFO adding 'Bio/SearchIO/InfernalIO/__init__.py' 2026-01-27 01:38:11,609 wheel INFO adding 'Bio/SearchIO/InfernalIO/_base.py' 2026-01-27 01:38:11,609 wheel INFO adding 'Bio/SearchIO/InfernalIO/infernal_tab.py' 2026-01-27 01:38:11,609 wheel INFO adding 'Bio/SearchIO/InfernalIO/infernal_text.py' 2026-01-27 01:38:11,610 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py' 2026-01-27 01:38:11,610 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py' 2026-01-27 01:38:11,610 wheel INFO adding 'Bio/SearchIO/_model/__init__.py' 2026-01-27 01:38:11,610 wheel INFO adding 'Bio/SearchIO/_model/_base.py' 2026-01-27 01:38:11,610 wheel INFO adding 'Bio/SearchIO/_model/hit.py' 2026-01-27 01:38:11,611 wheel INFO adding 'Bio/SearchIO/_model/hsp.py' 2026-01-27 01:38:11,611 wheel INFO adding 'Bio/SearchIO/_model/query.py' 2026-01-27 01:38:11,611 wheel INFO adding 'Bio/SeqIO/AbiIO.py' 2026-01-27 01:38:11,612 wheel INFO adding 'Bio/SeqIO/AceIO.py' 2026-01-27 01:38:11,612 wheel INFO adding 'Bio/SeqIO/FastaIO.py' 2026-01-27 01:38:11,612 wheel INFO adding 'Bio/SeqIO/GckIO.py' 2026-01-27 01:38:11,612 wheel INFO adding 'Bio/SeqIO/GfaIO.py' 2026-01-27 01:38:11,612 wheel INFO adding 'Bio/SeqIO/IgIO.py' 2026-01-27 01:38:11,613 wheel INFO adding 'Bio/SeqIO/InsdcIO.py' 2026-01-27 01:38:11,613 wheel INFO adding 'Bio/SeqIO/Interfaces.py' 2026-01-27 01:38:11,613 wheel INFO adding 'Bio/SeqIO/NibIO.py' 2026-01-27 01:38:11,613 wheel INFO adding 'Bio/SeqIO/PdbIO.py' 2026-01-27 01:38:11,614 wheel INFO adding 'Bio/SeqIO/PhdIO.py' 2026-01-27 01:38:11,614 wheel INFO adding 'Bio/SeqIO/PirIO.py' 2026-01-27 01:38:11,614 wheel INFO adding 'Bio/SeqIO/QualityIO.py' 2026-01-27 01:38:11,614 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py' 2026-01-27 01:38:11,615 wheel INFO adding 'Bio/SeqIO/SffIO.py' 2026-01-27 01:38:11,615 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py' 2026-01-27 01:38:11,615 wheel INFO adding 'Bio/SeqIO/SwissIO.py' 2026-01-27 01:38:11,615 wheel INFO adding 'Bio/SeqIO/TabIO.py' 2026-01-27 01:38:11,616 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py' 2026-01-27 01:38:11,616 wheel INFO adding 'Bio/SeqIO/UniprotIO.py' 2026-01-27 01:38:11,616 wheel INFO adding 'Bio/SeqIO/XdnaIO.py' 2026-01-27 01:38:11,616 wheel INFO adding 'Bio/SeqIO/__init__.py' 2026-01-27 01:38:11,617 wheel INFO adding 'Bio/SeqIO/_index.py' 2026-01-27 01:38:11,617 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c' 2026-01-27 01:38:11,617 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,617 wheel INFO adding 'Bio/SeqUtils/CheckSum.py' 2026-01-27 01:38:11,617 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py' 2026-01-27 01:38:11,618 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py' 2026-01-27 01:38:11,618 wheel INFO adding 'Bio/SeqUtils/ProtParam.py' 2026-01-27 01:38:11,618 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py' 2026-01-27 01:38:11,618 wheel INFO adding 'Bio/SeqUtils/__init__.py' 2026-01-27 01:38:11,619 wheel INFO adding 'Bio/SeqUtils/lcc.py' 2026-01-27 01:38:11,619 wheel INFO adding 'Bio/Sequencing/Ace.py' 2026-01-27 01:38:11,619 wheel INFO adding 'Bio/Sequencing/Phd.py' 2026-01-27 01:38:11,619 wheel INFO adding 'Bio/Sequencing/__init__.py' 2026-01-27 01:38:11,620 wheel INFO adding 'Bio/SwissProt/KeyWList.py' 2026-01-27 01:38:11,620 wheel INFO adding 'Bio/SwissProt/__init__.py' 2026-01-27 01:38:11,620 wheel INFO adding 'Bio/TogoWS/__init__.py' 2026-01-27 01:38:11,620 wheel INFO adding 'Bio/UniGene/__init__.py' 2026-01-27 01:38:11,621 wheel INFO adding 'Bio/UniProt/GOA.py' 2026-01-27 01:38:11,621 wheel INFO adding 'Bio/UniProt/__init__.py' 2026-01-27 01:38:11,621 wheel INFO adding 'Bio/codonalign/__init__.py' 2026-01-27 01:38:11,621 wheel INFO adding 'Bio/codonalign/codonalignment.py' 2026-01-27 01:38:11,622 wheel INFO adding 'Bio/codonalign/codonseq.py' 2026-01-27 01:38:11,622 wheel INFO adding 'Bio/motifs/__init__.py' 2026-01-27 01:38:11,622 wheel INFO adding 'Bio/motifs/_pwm.c' 2026-01-27 01:38:11,622 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-arm-linux-musleabihf.so' 2026-01-27 01:38:11,622 wheel INFO adding 'Bio/motifs/alignace.py' 2026-01-27 01:38:11,623 wheel INFO adding 'Bio/motifs/clusterbuster.py' 2026-01-27 01:38:11,623 wheel INFO adding 'Bio/motifs/mast.py' 2026-01-27 01:38:11,623 wheel INFO adding 'Bio/motifs/matrix.py' 2026-01-27 01:38:11,623 wheel INFO adding 'Bio/motifs/meme.py' 2026-01-27 01:38:11,623 wheel INFO adding 'Bio/motifs/minimal.py' 2026-01-27 01:38:11,624 wheel INFO adding 'Bio/motifs/pfm.py' 2026-01-27 01:38:11,624 wheel INFO adding 'Bio/motifs/thresholds.py' 2026-01-27 01:38:11,624 wheel INFO adding 'Bio/motifs/transfac.py' 2026-01-27 01:38:11,624 wheel INFO adding 'Bio/motifs/xms.py' 2026-01-27 01:38:11,624 wheel INFO adding 'Bio/motifs/jaspar/__init__.py' 2026-01-27 01:38:11,625 wheel INFO adding 'Bio/motifs/jaspar/db.py' 2026-01-27 01:38:11,625 wheel INFO adding 'Bio/phenotype/__init__.py' 2026-01-27 01:38:11,625 wheel INFO adding 'Bio/phenotype/phen_micro.py' 2026-01-27 01:38:11,625 wheel INFO adding 'Bio/phenotype/pm_fitting.py' 2026-01-27 01:38:11,626 wheel INFO adding 'BioSQL/BioSeq.py' 2026-01-27 01:38:11,626 wheel INFO adding 'BioSQL/BioSeqDatabase.py' 2026-01-27 01:38:11,626 wheel INFO adding 'BioSQL/DBUtils.py' 2026-01-27 01:38:11,626 wheel INFO adding 'BioSQL/Loader.py' 2026-01-27 01:38:11,627 wheel INFO adding 'BioSQL/__init__.py' 2026-01-27 01:38:11,627 wheel INFO adding 'BioSQL/py.typed' 2026-01-27 01:38:11,627 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE' 2026-01-27 01:38:11,627 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst' 2026-01-27 01:38:11,627 wheel INFO adding 'biopython-1.86.dist-info/METADATA' 2026-01-27 01:38:11,628 wheel INFO adding 'biopython-1.86.dist-info/WHEEL' 2026-01-27 01:38:11,628 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt' 2026-01-27 01:38:11,630 wheel INFO adding 'biopython-1.86.dist-info/RECORD' 2026-01-27 01:38:11,633 root INFO removing build/bdist.linux-armv8l/wheel 2026-01-27 01:38:11,647 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_armv8l.whl biopython-1.86-cp312-cp312-linux_armv8l.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' 'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' 'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.12 >>> py3-biopython-pyc*: Package size: 5.9 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-armv7.so.1 >>> py3-biopython*: Package size: 10.7 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.86-r0.apk >>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:38:14 +0000 elapsed time 0h 0m 23s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20260127.013752) ( 2/31) Purging py3-gpep517-pyc (19-r1) ( 3/31) Purging py3-gpep517 (19-r1) ( 4/31) Purging py3-installer-pyc (0.7.0-r2) ( 5/31) Purging py3-installer (0.7.0-r2) ( 6/31) Purging py3-setuptools-pyc (80.9.0-r2) ( 7/31) Purging py3-setuptools (80.9.0-r2) ( 8/31) Purging py3-wheel-pyc (0.46.1-r0) ( 9/31) Purging py3-wheel (0.46.1-r0) (10/31) Purging py3-packaging-pyc (25.0-r0) (11/31) Purging py3-packaging (25.0-r0) (12/31) Purging py3-parsing-pyc (3.3.1-r0) (13/31) Purging py3-parsing (3.3.1-r0) (14/31) Purging py3-numpy-dev (2.3.5-r0) (15/31) Purging py3-numpy-tests (2.3.5-r0) (16/31) Purging py3-numpy-pyc (2.3.5-r0) (17/31) Purging py3-numpy (2.3.5-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.12.12-r0) (20/31) Purging python3-pyc (3.12.12-r0) (21/31) Purging python3-pycache-pyc0 (3.12.12-r0) (22/31) Purging pyc (3.12.12-r0) (23/31) Purging python3 (3.12.12-r0) (24/31) Purging gdbm (1.26-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.5.2-r0) (27/31) Purging libgfortran (15.2.0-r2) (28/31) Purging libpanelw (6.6_p20251231-r0) (29/31) Purging mpdecimal (4.0.1-r0) (30/31) Purging sqlite-libs (3.51.2-r1) (31/31) Purging xz-libs (5.8.2-r0) Executing busybox-1.37.0-r31.trigger OK: 289.5 MiB in 105 packages >>> py3-biopython: Updating the community/armv7 repository index... >>> py3-biopython: Signing the index...