>>> py3-bioframe: Building community/py3-bioframe 0.8.0-r0 (using abuild 3.15.0_rc2-r0) started Thu, 10 Apr 2025 13:41:10 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/107) Installing libgfortran (14.2.0-r5) (2/107) Installing openblas (0.3.28-r0) (3/107) Installing libbz2 (1.0.8-r6) (4/107) Installing libffi (3.4.7-r0) (5/107) Installing gdbm (1.24-r0) (6/107) Installing xz-libs (5.8.1-r0) (7/107) Installing mpdecimal (4.0.0-r0) (8/107) Installing libpanelw (6.5_p20250216-r0) (9/107) Installing sqlite-libs (3.49.1-r0) (10/107) Installing python3 (3.12.10-r0) (11/107) Installing python3-pycache-pyc0 (3.12.10-r0) (12/107) Installing pyc (3.12.10-r0) (13/107) Installing py3-contourpy-pyc (1.3.1-r0) (14/107) Installing py3-cycler (0.12.1-r1) (15/107) Installing py3-cycler-pyc (0.12.1-r1) (16/107) Installing py3-six (1.17.0-r0) (17/107) Installing py3-six-pyc (1.17.0-r0) (18/107) Installing py3-dateutil (2.9.0-r1) (19/107) Installing py3-dateutil-pyc (2.9.0-r1) (20/107) Installing py3-fonttools (4.56.0-r0) (21/107) Installing py3-fonttools-pyc (4.56.0-r0) (22/107) Installing py3-kiwisolver (1.4.6-r0) (23/107) Installing py3-kiwisolver-pyc (1.4.6-r0) (24/107) Installing py3-matplotlib-fonts (3.9.3-r0) (25/107) Installing py3-matplotlib-data (3.9.3-r0) (26/107) Installing py3-parsing (3.2.0-r0) (27/107) Installing py3-parsing-pyc (3.2.0-r0) (28/107) Installing py3-packaging (24.2-r0) (29/107) Installing py3-packaging-pyc (24.2-r0) (30/107) Installing libpng (1.6.47-r0) (31/107) Installing freetype (2.13.3-r0) (32/107) Installing libimagequant (4.2.2-r0) (33/107) Installing libjpeg-turbo (3.1.0-r0) (34/107) Installing lcms2 (2.16-r0) (35/107) Installing openjpeg (2.5.3-r0) (36/107) Installing libsharpyuv (1.5.0-r0) (37/107) Installing libwebp (1.5.0-r0) (38/107) Installing tiff (4.7.0-r0) (39/107) Installing libwebpdemux (1.5.0-r0) (40/107) Installing libwebpmux (1.5.0-r0) (41/107) Installing libxau (1.0.12-r0) (42/107) Installing libmd (1.1.0-r0) (43/107) Installing libbsd (0.12.2-r0) (44/107) Installing libxdmcp (1.1.5-r1) (45/107) Installing libxcb (1.17.0-r0) (46/107) Installing py3-pillow (11.1.0-r0) (47/107) Installing py3-pillow-pyc (11.1.0-r0) (48/107) Installing py3-matplotlib-pyc (3.9.3-r0) (49/107) Installing py3-numpy-pyc (2.2.4-r0) (50/107) Installing python3-pyc (3.12.10-r0) (51/107) Installing py3-numpy (2.2.4-r0) (52/107) Installing py3-numpy-tests (2.2.4-r0) (53/107) Installing py3-contourpy (1.3.1-r0) (54/107) Installing qhull (2020.2-r3) (55/107) Installing py3-matplotlib (3.9.3-r0) (56/107) Installing py3-tz (2025.2-r0) (57/107) Installing py3-tz-pyc (2025.2-r0) (58/107) Installing py3-attrs (25.3.0-r0) (59/107) Installing py3-attrs-pyc 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(77.0.3-r0) (81/107) Installing py3-installer (0.7.0-r2) (82/107) Installing py3-installer-pyc (0.7.0-r2) (83/107) Installing py3-gpep517 (16-r0) (84/107) Installing py3-gpep517-pyc (16-r0) (85/107) Installing py3-editables (0.5-r2) (86/107) Installing py3-editables-pyc (0.5-r2) (87/107) Installing py3-pathspec (0.12.1-r2) (88/107) Installing py3-pathspec-pyc (0.12.1-r2) (89/107) Installing py3-pluggy (1.5.0-r0) (90/107) Installing py3-pluggy-pyc (1.5.0-r0) (91/107) Installing py3-trove-classifiers (2025.1.15.22-r0) (92/107) Installing py3-trove-classifiers-pyc (2025.1.15.22-r0) (93/107) Installing py3-hatchling (1.27.0-r0) (94/107) Installing py3-hatchling-pyc (1.27.0-r0) (95/107) Installing py3-wheel (0.43.0-r0) (96/107) Installing py3-wheel-pyc (0.43.0-r0) (97/107) Installing py3-execnet (2.1.1-r0) (98/107) Installing py3-execnet-pyc (2.1.1-r0) (99/107) Installing py3-iniconfig (2.1.0-r0) (100/107) Installing py3-iniconfig-pyc (2.1.0-r0) (101/107) Installing py3-py (1.11.0-r4) (102/107) Installing py3-py-pyc (1.11.0-r4) (103/107) Installing py3-pytest (8.3.5-r0) (104/107) Installing py3-pytest-pyc (8.3.5-r0) (105/107) Installing py3-pytest-xdist (3.6.1-r0) (106/107) Installing py3-pytest-xdist-pyc (3.6.1-r0) (107/107) Installing .makedepends-py3-bioframe (20250410.134112) Executing busybox-1.37.0-r15.trigger OK: 462 MiB in 211 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 952k 0 952k 0 0 1576k 0 --:--:-- --:--:-- --:--:-- 1576k >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/bioframe-0.8.0.tar.gz... 2025-04-10 13:41:16,160 gpep517 INFO Building wheel via backend hatchling.build 2025-04-10 13:41:16,317 gpep517 INFO The backend produced .dist/bioframe-0.8.0-py3-none-any.whl bioframe-0.8.0-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.8.0 configfile: pyproject.toml testpaths: tests plugins: xdist-3.6.1 created: 32/32 workers 32 workers [70 items] .ss....s.............................................................. [100%] =========================== short test summary info ============================ SKIPPED [1] tests/test_extras.py:85: could not import 'Bio': No module named 'Bio' SKIPPED [1] tests/test_extras.py:129: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:97: could not import 'pysam': No module named 'pysam' ======================== 67 passed, 3 skipped in 12.45s ======================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6/popen-gw10/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6/popen-gw10/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6/popen-gw10 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6/popen-gw10' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-3db309ef-8fc6-4e8b-b362-e58fef2378a6' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e/popen-gw1/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e/popen-gw1/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e/popen-gw1 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e/popen-gw1' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b07a15ed-b569-40b6-9a6c-fdf9c8ba9e0e' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65/popen-gw9/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65/popen-gw9/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65/popen-gw9 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65/popen-gw9' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-b9c6d9c5-394e-42b0-9a1f-6400070eef65' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f/popen-gw26/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f/popen-gw26/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f/popen-gw26 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f/popen-gw26' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ca7768cf-bf3f-450a-a281-a2ae71a6ab2f' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.8.0-r0.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 263.5 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.8.0-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 238.5 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.8.0-r0.apk >>> py3-bioframe: Build complete at Thu, 10 Apr 2025 13:41:30 +0000 elapsed time 0h 0m 20s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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