>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:37:53 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r0) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.2-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20251231-r0) ( 7/31) Installing sqlite-libs (3.51.2-r1) ( 8/31) Installing python3 (3.12.12-r0) ( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0) (10/31) Installing pyc (3.12.12-r0) (11/31) Installing py3-numpy-pyc (2.3.5-r0) (12/31) Installing python3-pyc (3.12.12-r0) (13/31) Installing libgfortran (15.2.0-r2) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.3.5-r0) (16/31) Installing py3-numpy-tests (2.3.5-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (19-r1) (20/31) Installing py3-gpep517-pyc (19-r1) (21/31) Installing py3-parsing (3.3.1-r0) (22/31) Installing py3-parsing-pyc (3.3.1-r0) (23/31) Installing py3-packaging (25.0-r0) (24/31) Installing py3-packaging-pyc (25.0-r0) (25/31) Installing py3-setuptools (80.9.0-r2) (26/31) Installing py3-setuptools-pyc (80.9.0-r2) (27/31) Installing py3-wheel (0.46.1-r0) (28/31) Installing py3-wheel-pyc (0.46.1-r0) (29/31) Installing py3-numpy-dev (2.3.5-r0) (30/31) Installing python3-dev (3.12.12-r0) (31/31) Installing .makedepends-py3-biopython (20260127.013754) Executing busybox-1.37.0-r31.trigger OK: 558.2 MiB in 134 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz Connecting to files.pythonhosted.org (151.101.0.223:443) Connecting to files.pythonhosted.org (151.101.0.223:443) saving to '/var/cache/distfiles/biopython-1.86.tar.gz.part' biopython-1.86.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/biopython-1.86.tar.gz.part' saved /var/cache/distfiles/biopython-1.86.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz /var/cache/distfiles/biopython-1.86.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.86.tar.gz... 2026-01-27 01:37:58,833 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2026-01-27 01:37:58,874 root INFO running bdist_wheel 2026-01-27 01:37:58,903 root INFO running build 2026-01-27 01:37:58,903 root INFO running build_py 2026-01-27 01:37:58,910 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,911 root INFO copying Bio/pairwise2.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,911 root INFO copying Bio/SeqRecord.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,912 root INFO copying Bio/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,912 root INFO copying Bio/SeqFeature.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,913 root INFO copying Bio/File.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,913 root INFO copying Bio/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,914 root INFO copying Bio/Seq.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,914 root INFO copying Bio/bgzf.py -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:58,915 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Affy 2026-01-27 01:37:58,915 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Affy 2026-01-27 01:37:58,916 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-loongarch64-cpython-312/Bio/Affy 2026-01-27 01:37:58,917 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,917 root INFO copying Bio/Align/chain.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,918 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,918 root INFO copying Bio/Align/nexus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,918 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,919 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,919 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,920 root INFO copying Bio/Align/sam.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,920 root INFO copying Bio/Align/bed.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,921 root INFO copying Bio/Align/hhr.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,921 root INFO copying Bio/Align/phylip.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,922 root INFO copying Bio/Align/msf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,922 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,923 root INFO copying Bio/Align/mauve.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,923 root INFO copying Bio/Align/emboss.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,923 root INFO copying Bio/Align/tabular.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,924 root INFO copying Bio/Align/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,925 root INFO copying Bio/Align/analysis.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,925 root INFO copying Bio/Align/psl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,926 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,926 root INFO copying Bio/Align/clustal.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,926 root INFO copying Bio/Align/a2m.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,927 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,927 root INFO copying Bio/Align/fasta.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,928 root INFO copying Bio/Align/maf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:58,928 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:58,929 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:58,930 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,930 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,930 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,931 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,931 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,932 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,932 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,933 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,933 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,934 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,934 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,934 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO 2026-01-27 01:37:58,935 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Alphabet 2026-01-27 01:37:58,935 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Alphabet 2026-01-27 01:37:58,936 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,936 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,937 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,937 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,938 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,938 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast 2026-01-27 01:37:58,939 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/CAPS 2026-01-27 01:37:58,939 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/CAPS 2026-01-27 01:37:58,940 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:58,940 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:58,941 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:58,941 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:58,941 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:58,942 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign 2026-01-27 01:37:58,942 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Compass 2026-01-27 01:37:58,943 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Compass 2026-01-27 01:37:58,943 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Data 2026-01-27 01:37:58,944 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data 2026-01-27 01:37:58,944 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data 2026-01-27 01:37:58,945 root INFO copying Bio/Data/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data 2026-01-27 01:37:58,945 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data 2026-01-27 01:37:58,946 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:58,946 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:58,946 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:58,947 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss 2026-01-27 01:37:58,947 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:58,948 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:58,948 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez 2026-01-27 01:37:58,950 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,950 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,951 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,951 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,952 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,952 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,952 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy 2026-01-27 01:37:58,953 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:58,953 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:58,954 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:58,954 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:58,955 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank 2026-01-27 01:37:58,955 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Geo 2026-01-27 01:37:58,956 root INFO copying Bio/Geo/Record.py -> build/lib.linux-loongarch64-cpython-312/Bio/Geo 2026-01-27 01:37:58,956 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Geo 2026-01-27 01:37:58,957 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,957 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,958 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,958 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,958 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,959 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,959 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,960 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics 2026-01-27 01:37:58,960 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,961 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,961 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,962 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,962 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,963 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,963 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,964 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,964 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,965 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,965 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,965 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,966 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:37:58,966 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/HMM 2026-01-27 01:37:58,967 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM 2026-01-27 01:37:58,967 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:58,968 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:58,968 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG 2026-01-27 01:37:58,969 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:58,969 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound 2026-01-27 01:37:58,969 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:58,970 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:37:58,970 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:58,971 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene 2026-01-27 01:37:58,971 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:58,971 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map 2026-01-27 01:37:58,972 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:58,972 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:58,973 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:58,973 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf 2026-01-27 01:37:58,974 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:58,974 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:58,975 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:58,975 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML 2026-01-27 01:37:58,976 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Medline 2026-01-27 01:37:58,976 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Medline 2026-01-27 01:37:58,977 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,977 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,977 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,978 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,978 root INFO copying Bio/motifs/meme.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,979 root INFO copying Bio/motifs/mast.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,979 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,980 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,980 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,981 root INFO copying Bio/motifs/xms.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,981 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,981 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:58,982 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:58,982 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:58,983 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar 2026-01-27 01:37:58,983 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,984 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,984 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,985 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,985 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,986 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:58,986 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/NMR 2026-01-27 01:37:58,987 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR 2026-01-27 01:37:58,987 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR 2026-01-27 01:37:58,987 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR 2026-01-27 01:37:58,988 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Pathway 2026-01-27 01:37:58,988 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway 2026-01-27 01:37:58,989 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:58,989 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:58,990 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:58,990 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep 2026-01-27 01:37:58,991 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,992 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,992 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,993 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,993 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,993 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,994 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,995 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,995 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,995 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,996 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,996 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,997 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,997 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,998 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,998 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,999 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,999 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:58,999 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,000 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,000 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,001 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,001 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,002 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,002 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,003 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,003 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,004 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,004 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,004 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,005 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,005 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,006 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,006 root INFO copying Bio/PDB/Model.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,007 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,007 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,008 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,008 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,008 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,009 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,009 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,010 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:59,010 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:59,011 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:59,011 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype 2026-01-27 01:37:59,012 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PopGen 2026-01-27 01:37:59,012 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen 2026-01-27 01:37:59,013 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:59,013 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:59,013 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:59,014 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:37:59,014 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:59,015 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:59,015 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:59,016 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:59,016 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction 2026-01-27 01:37:59,018 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,018 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,018 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,019 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,019 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,020 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,020 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,021 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP 2026-01-27 01:37:59,021 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,021 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,022 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,022 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,023 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,023 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO 2026-01-27 01:37:59,024 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,024 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,025 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,025 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,026 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,026 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model 2026-01-27 01:37:59,027 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:59,027 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:59,027 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:59,028 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:37:59,029 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:59,029 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:59,029 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:37:59,030 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,030 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,031 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,031 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,032 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,032 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,033 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:37:59,033 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:59,033 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:59,034 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:59,034 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:59,035 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:37:59,035 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,036 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,036 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,037 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,037 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,038 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:37:59,038 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:59,038 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:59,039 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:37:59,040 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,040 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,040 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,041 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,041 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,042 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,042 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,043 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,043 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,044 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,044 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,045 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,045 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,046 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,046 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,046 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,047 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,047 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,048 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,048 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,049 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,049 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,050 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,050 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,051 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,051 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,052 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,052 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,053 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,053 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,053 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,054 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils 2026-01-27 01:37:59,054 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:59,055 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:59,055 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:59,056 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing 2026-01-27 01:37:59,056 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:59,057 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:37:59,057 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:59,057 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-loongarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:59,058 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SwissProt 2026-01-27 01:37:59,058 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/TogoWS 2026-01-27 01:37:59,059 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/TogoWS 2026-01-27 01:37:59,060 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,060 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,060 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,061 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,061 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,062 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,062 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,063 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,063 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,064 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,064 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,064 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,065 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,065 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,066 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,066 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,067 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo 2026-01-27 01:37:59,067 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,068 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,068 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,069 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,069 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,070 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,070 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,070 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,071 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,071 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML 2026-01-27 01:37:59,072 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/UniGene 2026-01-27 01:37:59,072 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniGene 2026-01-27 01:37:59,073 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:59,073 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:59,074 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniProt 2026-01-27 01:37:59,074 root INFO creating build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,074 root INFO copying BioSQL/Loader.py -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,075 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,076 root INFO copying BioSQL/__init__.py -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,076 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,076 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,077 root INFO running egg_info 2026-01-27 01:37:59,082 root INFO writing biopython.egg-info/PKG-INFO 2026-01-27 01:37:59,083 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-01-27 01:37:59,084 root INFO writing requirements to biopython.egg-info/requires.txt 2026-01-27 01:37:59,084 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-01-27 01:37:59,114 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-01-27 01:37:59,213 root INFO reading manifest template 'MANIFEST.in' 2026-01-27 01:37:59,361 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-01-27 01:37:59,369 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-01-27 01:37:59,373 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-01-27 01:37:59,378 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-01-27 01:37:59,382 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-01-27 01:37:59,387 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-01-27 01:37:59,396 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-01-27 01:37:59,397 root INFO adding license file 'LICENSE' 2026-01-27 01:37:59,397 root INFO adding license file 'LICENSE.rst' 2026-01-27 01:37:59,457 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2026-01-27 01:37:59,504 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:59,505 root INFO copying Bio/py.typed -> build/lib.linux-loongarch64-cpython-312/Bio 2026-01-27 01:37:59,505 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,506 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,506 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,507 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,508 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,508 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:59,509 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:37:59,509 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,509 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,510 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,510 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,511 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,511 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,512 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,512 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,513 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,513 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,514 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,514 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,514 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,515 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,515 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,516 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,516 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,517 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,517 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,518 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,518 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,519 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,519 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,520 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,520 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,520 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,521 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,521 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,522 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,522 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,523 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:37:59,523 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:59,524 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:59,524 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:37:59,525 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,525 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,526 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,526 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,527 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,527 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,527 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,528 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,528 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,529 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,529 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,530 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,530 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,531 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,531 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,532 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,532 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,533 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,533 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,534 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,534 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,534 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,535 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,535 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,536 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,536 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,537 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,537 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,538 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,539 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,539 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,539 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,540 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,541 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,541 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,542 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,542 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,543 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,543 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,544 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,544 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,545 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,545 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,546 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,546 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,547 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,547 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,548 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,548 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,549 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,549 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,550 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,550 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,551 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,551 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,552 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,552 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,553 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,553 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,554 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,554 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,554 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,555 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,555 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,556 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,556 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,557 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,557 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,558 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,558 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,559 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,559 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,560 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,560 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,560 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,561 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,561 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,562 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,562 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,563 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,563 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,564 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,564 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,565 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,565 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,565 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,566 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,566 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,567 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,567 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,568 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,568 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,569 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,569 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,570 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,570 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,571 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,571 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,571 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,572 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,572 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,573 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,573 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,574 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,574 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,575 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,575 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,575 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,576 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,576 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,577 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,577 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,578 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,578 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,579 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,579 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,580 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,580 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,581 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,581 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,581 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,582 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,582 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,583 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,583 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,584 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,584 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,585 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,585 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,586 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,586 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,586 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,587 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,587 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,588 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,588 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,589 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,589 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,590 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,590 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,591 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,591 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,591 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,592 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,592 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,593 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,593 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,594 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,594 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,595 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,595 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,596 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,596 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,597 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,597 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,598 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,598 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,598 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,599 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,599 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,600 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,600 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,601 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,601 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,602 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,602 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,603 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,603 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,604 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,604 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,604 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,605 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,605 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,606 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,606 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,607 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,607 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,608 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,608 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,609 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,609 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,610 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,610 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,611 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,611 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,612 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,612 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,613 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,613 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,614 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,614 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,615 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,615 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,616 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,616 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,617 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,617 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,618 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,618 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,618 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,619 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,619 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,620 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,620 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,621 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,621 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,622 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,622 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,623 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,623 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,623 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,624 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,624 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,625 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,625 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,626 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,626 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,627 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,627 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,628 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,628 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,629 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,629 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,629 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,630 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,630 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,631 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,631 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,632 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,632 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,633 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,633 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,634 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,634 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,635 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,635 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,636 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,636 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,637 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,637 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,638 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,638 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,638 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,639 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,639 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,640 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,640 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,641 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,641 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,642 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,642 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,643 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,643 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,644 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,644 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,644 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,645 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,645 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,646 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,646 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,647 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,647 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,648 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,648 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,649 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,649 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,650 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,650 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,651 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,651 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,651 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,652 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,652 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,653 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,653 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,654 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,654 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,655 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,655 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,656 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,656 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,656 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,657 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,657 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,658 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,658 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,659 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,659 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,660 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:37:59,660 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:59,661 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:59,661 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:59,661 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:37:59,662 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:37:59,662 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:37:59,663 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,663 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,664 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:37:59,664 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:37:59,665 root INFO copying BioSQL/py.typed -> build/lib.linux-loongarch64-cpython-312/BioSQL 2026-01-27 01:37:59,677 root INFO running build_ext 2026-01-27 01:37:59,681 root INFO building 'Bio.Align._aligncore' extension 2026-01-27 01:37:59,681 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Align 2026-01-27 01:37:59,682 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_aligncore.o 2026-01-27 01:38:00,045 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:00,061 root INFO building 'Bio.Align._alignmentcounts' extension 2026-01-27 01:38:00,061 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_alignmentcounts.o 2026-01-27 01:38:01,212 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:01,229 root INFO building 'Bio.Align._codonaligner' extension 2026-01-27 01:38:01,230 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.o 2026-01-27 01:38:02,055 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:02,072 root INFO building 'Bio.Align._pairwisealigner' extension 2026-01-27 01:38:02,072 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.o 2026-01-27 01:38:12,011 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:12,034 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-01-27 01:38:12,035 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:12,035 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o 2026-01-27 01:38:12,324 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:12,339 root INFO building 'Bio.cpairwise2' extension 2026-01-27 01:38:12,339 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-loongarch64-cpython-312/Bio/cpairwise2module.o 2026-01-27 01:38:12,786 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:12,801 root INFO building 'Bio.Nexus.cnexus' extension 2026-01-27 01:38:12,802 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Nexus 2026-01-27 01:38:12,802 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.o 2026-01-27 01:38:12,983 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:12,997 root INFO building 'Bio.motifs._pwm' extension 2026-01-27 01:38:12,997 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/motifs 2026-01-27 01:38:12,998 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-loongarch64-cpython-312/Bio/motifs/_pwm.o 2026-01-27 01:38:13,208 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:13,223 root INFO building 'Bio.Cluster._cluster' extension 2026-01-27 01:38:13,224 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Cluster 2026-01-27 01:38:13,224 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:16,397 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:17,470 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:17,489 root INFO building 'Bio.PDB.ccealign' extension 2026-01-27 01:38:17,490 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/PDB 2026-01-27 01:38:17,490 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.o 2026-01-27 01:38:17,985 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealign.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:18,000 root INFO building 'Bio.PDB.kdtrees' extension 2026-01-27 01:38:18,001 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.o 2026-01-27 01:38:18,626 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:18,642 root INFO building 'Bio.PDB._bcif_helper' extension 2026-01-27 01:38:18,643 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.o 2026-01-27 01:38:18,860 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:18,874 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-01-27 01:38:18,875 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/SeqIO 2026-01-27 01:38:18,875 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.o 2026-01-27 01:38:19,157 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so 2026-01-27 01:38:19,187 root INFO installing to build/bdist.linux-loongarch64/wheel 2026-01-27 01:38:19,187 root INFO running install 2026-01-27 01:38:19,205 root INFO running install_lib 2026-01-27 01:38:19,213 root INFO creating build/bdist.linux-loongarch64/wheel 2026-01-27 01:38:19,213 root INFO creating build/bdist.linux-loongarch64/wheel/Bio 2026-01-27 01:38:19,214 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen 2026-01-27 01:38:19,214 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen/GenePop 2026-01-27 01:38:19,215 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:19,215 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:19,216 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:19,216 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen 2026-01-27 01:38:19,216 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/NMR 2026-01-27 01:38:19,217 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-01-27 01:38:19,217 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-01-27 01:38:19,217 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-01-27 01:38:19,218 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/ExPASy 2026-01-27 01:38:19,218 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-01-27 01:38:19,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,221 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/AlignIO 2026-01-27 01:38:19,221 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,222 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,222 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,222 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,224 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,224 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,225 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,225 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-01-27 01:38:19,225 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,226 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,226 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,226 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/CAPS 2026-01-27 01:38:19,227 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/CAPS 2026-01-27 01:38:19,227 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Blast 2026-01-27 01:38:19,228 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-01-27 01:38:19,228 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-01-27 01:38:19,228 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-01-27 01:38:19,229 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-01-27 01:38:19,229 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-01-27 01:38:19,230 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Emboss 2026-01-27 01:38:19,230 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-01-27 01:38:19,230 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-01-27 01:38:19,231 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-01-27 01:38:19,231 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/TogoWS 2026-01-27 01:38:19,232 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/TogoWS 2026-01-27 01:38:19,232 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB 2026-01-27 01:38:19,232 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,234 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,234 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,235 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,235 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,238 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,238 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealign.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,241 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,241 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,243 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,243 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,243 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,245 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,245 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,248 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,248 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,248 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,249 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,249 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,250 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB/mmtf 2026-01-27 01:38:19,250 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:19,250 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:19,251 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:19,251 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-01-27 01:38:19,252 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SwissProt 2026-01-27 01:38:19,252 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt 2026-01-27 01:38:19,252 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt 2026-01-27 01:38:19,253 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqUtils 2026-01-27 01:38:19,253 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,255 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,255 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,255 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-01-27 01:38:19,256 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Geo 2026-01-27 01:38:19,256 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo 2026-01-27 01:38:19,257 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo 2026-01-27 01:38:19,257 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/py.typed -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,257 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniProt 2026-01-27 01:38:19,258 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt 2026-01-27 01:38:19,258 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt 2026-01-27 01:38:19,258 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SCOP 2026-01-27 01:38:19,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,260 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,260 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,261 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,261 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-01-27 01:38:19,261 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO 2026-01-27 01:38:19,262 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/InfernalIO 2026-01-27 01:38:19,262 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:19,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:19,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:19,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:19,264 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:19,264 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:19,265 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/_model 2026-01-27 01:38:19,265 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:19,265 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:19,266 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:19,266 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:19,266 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:19,267 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/BlastIO 2026-01-27 01:38:19,267 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:19,268 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:19,268 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:19,269 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,269 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,269 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,270 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,270 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,270 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,271 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:19,271 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:19,272 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:19,272 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:19,272 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:19,273 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,273 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,274 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,274 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,274 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,275 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:19,275 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:19,276 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:19,276 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:19,276 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:19,277 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-01-27 01:38:19,277 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/codonalign 2026-01-27 01:38:19,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-01-27 01:38:19,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-01-27 01:38:19,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-01-27 01:38:19,279 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Sequencing 2026-01-27 01:38:19,279 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:19,279 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:19,280 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-01-27 01:38:19,280 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway 2026-01-27 01:38:19,281 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway 2026-01-27 01:38:19,281 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway/Rep 2026-01-27 01:38:19,281 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,282 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,282 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,282 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Compass 2026-01-27 01:38:19,283 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Compass 2026-01-27 01:38:19,283 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/GenBank 2026-01-27 01:38:19,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-01-27 01:38:19,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-01-27 01:38:19,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-01-27 01:38:19,285 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-01-27 01:38:19,285 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs 2026-01-27 01:38:19,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,287 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,287 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,289 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,289 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,289 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,290 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,290 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs/jaspar 2026-01-27 01:38:19,290 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:19,291 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:19,291 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-01-27 01:38:19,292 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Medline 2026-01-27 01:38:19,292 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Medline 2026-01-27 01:38:19,292 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqIO 2026-01-27 01:38:19,293 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,293 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,294 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,294 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,294 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,295 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,295 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,295 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,296 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,296 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,296 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,297 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,297 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,299 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,299 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,299 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,300 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,300 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,301 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,301 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,301 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,302 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-01-27 01:38:19,302 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,303 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniGene 2026-01-27 01:38:19,303 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniGene 2026-01-27 01:38:19,304 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align 2026-01-27 01:38:19,304 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,304 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,305 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,305 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,305 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,306 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,306 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,307 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices 2026-01-27 01:38:19,307 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,307 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,308 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,308 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,308 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,309 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,309 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,309 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,310 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,310 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,310 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,311 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,311 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,311 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,312 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,312 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,313 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,313 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,313 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,314 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,314 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,314 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,315 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,315 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,315 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,316 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,316 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,316 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,317 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,317 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,317 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,318 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,318 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,318 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,319 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,319 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,320 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,320 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,320 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,321 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,321 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,322 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,322 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,322 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,323 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,323 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,324 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,324 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,325 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,325 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,326 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,326 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,327 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,327 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,327 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,328 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,328 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,329 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,329 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,329 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,330 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-01-27 01:38:19,330 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/File.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,331 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo 2026-01-27 01:38:19,331 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,331 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,332 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,332 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,333 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,333 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo/PAML 2026-01-27 01:38:19,333 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,334 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,334 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,334 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,335 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,335 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,335 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,336 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,336 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:19,337 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,337 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,337 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,338 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,338 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,338 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,339 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,339 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,340 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,340 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,340 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-01-27 01:38:19,341 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,341 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/phenotype 2026-01-27 01:38:19,342 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-01-27 01:38:19,342 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-01-27 01:38:19,342 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-01-27 01:38:19,343 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Alphabet 2026-01-27 01:38:19,343 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Alphabet 2026-01-27 01:38:19,343 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,344 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Restriction 2026-01-27 01:38:19,344 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-01-27 01:38:19,345 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-01-27 01:38:19,345 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-01-27 01:38:19,345 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-01-27 01:38:19,347 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez 2026-01-27 01:38:19,348 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/DTDs 2026-01-27 01:38:19,348 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,348 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,349 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,349 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,349 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,350 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,350 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,350 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,351 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,351 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,351 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,352 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,352 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,353 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,353 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,353 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,354 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,354 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,354 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,355 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,355 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,355 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,356 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,356 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,356 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,357 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,357 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,358 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,358 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,358 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,359 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,359 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,359 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,360 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,360 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,360 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,361 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,361 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,361 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,362 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,362 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,362 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,363 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,363 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,364 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,364 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,364 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,365 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,365 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,365 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,366 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,366 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,366 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,367 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,367 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,367 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,368 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,368 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,369 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,369 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,369 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,370 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,370 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,371 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,371 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,371 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,372 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,372 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,372 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,373 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,373 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,373 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,374 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,374 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,374 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,375 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,375 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,379 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,379 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,380 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,380 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,380 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,381 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,381 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,381 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,382 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,382 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,384 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,384 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,384 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,387 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,387 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,388 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,388 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,388 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,389 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,389 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,391 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,391 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,391 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,392 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,392 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,392 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,393 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,393 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,393 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,394 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,394 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,395 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,395 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,395 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,396 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,396 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,396 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,397 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,397 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,397 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,398 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,398 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,400 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,400 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,402 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,402 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,404 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,404 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,404 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,405 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,405 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,405 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,406 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,406 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,407 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,407 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,407 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,408 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,408 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,408 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,409 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,409 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,410 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,410 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,410 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,411 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,411 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,411 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,412 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,412 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,412 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,413 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,413 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,413 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,414 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,414 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,415 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,415 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,416 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,416 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,416 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,417 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,417 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,417 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,418 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,418 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,418 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,419 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,419 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,420 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,420 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,420 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,421 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,421 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,421 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,422 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,422 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,423 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,423 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,423 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,424 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,424 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,424 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,425 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,425 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,426 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,426 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,426 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,427 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,427 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,427 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,428 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,428 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,429 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,429 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,429 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,430 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,430 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,430 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,431 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,431 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,431 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,432 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,432 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,433 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,433 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,433 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,434 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,434 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,434 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,435 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,435 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,436 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,436 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,436 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,437 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,437 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,437 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,438 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,438 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,438 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,439 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,439 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,440 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,440 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,440 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,441 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,441 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,442 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,442 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,442 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,443 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,443 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,443 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,444 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,444 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,444 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,445 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,445 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,446 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,446 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,446 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,447 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,447 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,447 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,448 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,448 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,448 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,449 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,449 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,450 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,450 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,450 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,451 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,451 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,451 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,452 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,452 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,452 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,453 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,453 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:19,454 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez 2026-01-27 01:38:19,454 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez 2026-01-27 01:38:19,454 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/XSDs 2026-01-27 01:38:19,455 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:19,455 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:19,456 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:19,456 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SVDSuperimposer 2026-01-27 01:38:19,456 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SVDSuperimposer 2026-01-27 01:38:19,457 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Cluster 2026-01-27 01:38:19,457 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-01-27 01:38:19,458 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-01-27 01:38:19,458 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-01-27 01:38:19,459 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-01-27 01:38:19,459 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-01-27 01:38:19,460 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Nexus 2026-01-27 01:38:19,460 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,460 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,461 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,461 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,461 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,462 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,462 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-01-27 01:38:19,463 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Seq.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,463 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Data 2026-01-27 01:38:19,464 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-01-27 01:38:19,464 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-01-27 01:38:19,464 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-01-27 01:38:19,465 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-01-27 01:38:19,465 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/bgzf.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-01-27 01:38:19,466 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG 2026-01-27 01:38:19,466 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Compound 2026-01-27 01:38:19,466 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Compound 2026-01-27 01:38:19,467 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Gene 2026-01-27 01:38:19,467 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Gene 2026-01-27 01:38:19,468 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Map 2026-01-27 01:38:19,468 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Map 2026-01-27 01:38:19,468 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Enzyme 2026-01-27 01:38:19,469 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Enzyme 2026-01-27 01:38:19,469 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG 2026-01-27 01:38:19,470 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/KGML 2026-01-27 01:38:19,470 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:19,470 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:19,471 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:19,471 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG 2026-01-27 01:38:19,471 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics 2026-01-27 01:38:19,472 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,472 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,473 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,473 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,473 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,474 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,474 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,475 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,475 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,475 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,476 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,476 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,476 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,477 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:19,477 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,477 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,478 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,478 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,478 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,479 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-01-27 01:38:19,479 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Affy 2026-01-27 01:38:19,480 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy 2026-01-27 01:38:19,480 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy 2026-01-27 01:38:19,480 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/HMM 2026-01-27 01:38:19,481 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM 2026-01-27 01:38:19,481 root INFO creating build/bdist.linux-loongarch64/wheel/BioSQL 2026-01-27 01:38:19,482 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/py.typed -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,482 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,482 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,483 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,483 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,483 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-01-27 01:38:19,484 root INFO running install_egg_info 2026-01-27 01:38:19,491 root INFO Copying biopython.egg-info to build/bdist.linux-loongarch64/wheel/./biopython-1.86-py3.12.egg-info 2026-01-27 01:38:19,493 root INFO running install_scripts 2026-01-27 01:38:19,504 root INFO creating build/bdist.linux-loongarch64/wheel/biopython-1.86.dist-info/WHEEL 2026-01-27 01:38:19,505 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.86/.dist/.tmp-3virfhty/biopython-1.86-cp312-cp312-linux_loongarch64.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it 2026-01-27 01:38:19,506 wheel INFO adding 'Bio/File.py' 2026-01-27 01:38:19,507 wheel INFO adding 'Bio/Seq.py' 2026-01-27 01:38:19,508 wheel INFO adding 'Bio/SeqFeature.py' 2026-01-27 01:38:19,509 wheel INFO adding 'Bio/SeqRecord.py' 2026-01-27 01:38:19,510 wheel INFO adding 'Bio/__init__.py' 2026-01-27 01:38:19,510 wheel INFO adding 'Bio/_utils.py' 2026-01-27 01:38:19,511 wheel INFO adding 'Bio/bgzf.py' 2026-01-27 01:38:19,512 wheel INFO adding 'Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,512 wheel INFO adding 'Bio/cpairwise2module.c' 2026-01-27 01:38:19,513 wheel INFO adding 'Bio/pairwise2.py' 2026-01-27 01:38:19,514 wheel INFO adding 'Bio/py.typed' 2026-01-27 01:38:19,514 wheel INFO adding 'Bio/Affy/CelFile.py' 2026-01-27 01:38:19,515 wheel INFO adding 'Bio/Affy/__init__.py' 2026-01-27 01:38:19,515 wheel INFO adding 'Bio/Align/AlignInfo.py' 2026-01-27 01:38:19,516 wheel INFO adding 'Bio/Align/__init__.py' 2026-01-27 01:38:19,518 wheel INFO adding 'Bio/Align/_aligncore.c' 2026-01-27 01:38:19,519 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,519 wheel INFO adding 'Bio/Align/_alignmentcounts.c' 2026-01-27 01:38:19,521 wheel INFO adding 'Bio/Align/_alignmentcounts.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,521 wheel INFO adding 'Bio/Align/_codonaligner.c' 2026-01-27 01:38:19,522 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,524 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2026-01-27 01:38:19,526 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,528 wheel INFO adding 'Bio/Align/_pairwisealigner.h' 2026-01-27 01:38:19,528 wheel INFO adding 'Bio/Align/a2m.py' 2026-01-27 01:38:19,529 wheel INFO adding 'Bio/Align/analysis.py' 2026-01-27 01:38:19,529 wheel INFO adding 'Bio/Align/bed.py' 2026-01-27 01:38:19,530 wheel INFO adding 'Bio/Align/bigbed.py' 2026-01-27 01:38:19,531 wheel INFO adding 'Bio/Align/bigmaf.py' 2026-01-27 01:38:19,531 wheel INFO adding 'Bio/Align/bigpsl.py' 2026-01-27 01:38:19,532 wheel INFO adding 'Bio/Align/chain.py' 2026-01-27 01:38:19,532 wheel INFO adding 'Bio/Align/clustal.py' 2026-01-27 01:38:19,533 wheel INFO adding 'Bio/Align/emboss.py' 2026-01-27 01:38:19,533 wheel INFO adding 'Bio/Align/exonerate.py' 2026-01-27 01:38:19,534 wheel INFO adding 'Bio/Align/fasta.py' 2026-01-27 01:38:19,534 wheel INFO adding 'Bio/Align/hhr.py' 2026-01-27 01:38:19,535 wheel INFO adding 'Bio/Align/interfaces.py' 2026-01-27 01:38:19,535 wheel INFO adding 'Bio/Align/maf.py' 2026-01-27 01:38:19,536 wheel INFO adding 'Bio/Align/mauve.py' 2026-01-27 01:38:19,536 wheel INFO adding 'Bio/Align/msf.py' 2026-01-27 01:38:19,537 wheel INFO adding 'Bio/Align/nexus.py' 2026-01-27 01:38:19,537 wheel INFO adding 'Bio/Align/phylip.py' 2026-01-27 01:38:19,537 wheel INFO adding 'Bio/Align/psl.py' 2026-01-27 01:38:19,538 wheel INFO adding 'Bio/Align/sam.py' 2026-01-27 01:38:19,539 wheel INFO adding 'Bio/Align/stockholm.py' 2026-01-27 01:38:19,539 wheel INFO adding 'Bio/Align/tabular.py' 2026-01-27 01:38:19,540 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2026-01-27 01:38:19,540 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.c' 2026-01-27 01:38:19,541 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,542 wheel INFO adding 'Bio/Align/substitution_matrices/_arraycore.h' 2026-01-27 01:38:19,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2026-01-27 01:38:19,542 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2026-01-27 01:38:19,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2026-01-27 01:38:19,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2026-01-27 01:38:19,543 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2026-01-27 01:38:19,544 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2026-01-27 01:38:19,544 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2026-01-27 01:38:19,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2026-01-27 01:38:19,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2026-01-27 01:38:19,545 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2026-01-27 01:38:19,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2026-01-27 01:38:19,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2026-01-27 01:38:19,546 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2026-01-27 01:38:19,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2026-01-27 01:38:19,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2026-01-27 01:38:19,547 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2026-01-27 01:38:19,548 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2026-01-27 01:38:19,548 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2026-01-27 01:38:19,548 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2026-01-27 01:38:19,549 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2026-01-27 01:38:19,549 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2026-01-27 01:38:19,549 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2026-01-27 01:38:19,550 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2026-01-27 01:38:19,550 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2026-01-27 01:38:19,551 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2026-01-27 01:38:19,551 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2026-01-27 01:38:19,551 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2026-01-27 01:38:19,552 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2026-01-27 01:38:19,552 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2026-01-27 01:38:19,553 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2026-01-27 01:38:19,553 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2026-01-27 01:38:19,553 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2026-01-27 01:38:19,554 wheel INFO adding 'Bio/AlignIO/FastaIO.py' 2026-01-27 01:38:19,554 wheel INFO adding 'Bio/AlignIO/Interfaces.py' 2026-01-27 01:38:19,555 wheel INFO adding 'Bio/AlignIO/MafIO.py' 2026-01-27 01:38:19,555 wheel INFO adding 'Bio/AlignIO/MauveIO.py' 2026-01-27 01:38:19,556 wheel INFO adding 'Bio/AlignIO/MsfIO.py' 2026-01-27 01:38:19,556 wheel INFO adding 'Bio/AlignIO/NexusIO.py' 2026-01-27 01:38:19,557 wheel INFO adding 'Bio/AlignIO/PhylipIO.py' 2026-01-27 01:38:19,557 wheel INFO adding 'Bio/AlignIO/StockholmIO.py' 2026-01-27 01:38:19,558 wheel INFO adding 'Bio/AlignIO/__init__.py' 2026-01-27 01:38:19,558 wheel INFO adding 'Bio/Alphabet/__init__.py' 2026-01-27 01:38:19,559 wheel INFO adding 'Bio/Blast/NCBIWWW.py' 2026-01-27 01:38:19,560 wheel INFO adding 'Bio/Blast/NCBIXML.py' 2026-01-27 01:38:19,560 wheel INFO adding 'Bio/Blast/__init__.py' 2026-01-27 01:38:19,561 wheel INFO adding 'Bio/Blast/_parser.py' 2026-01-27 01:38:19,562 wheel INFO adding 'Bio/Blast/_writers.py' 2026-01-27 01:38:19,563 wheel INFO adding 'Bio/CAPS/__init__.py' 2026-01-27 01:38:19,563 wheel INFO adding 'Bio/Cluster/__init__.py' 2026-01-27 01:38:19,564 wheel INFO adding 'Bio/Cluster/_cluster.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,565 wheel INFO adding 'Bio/Cluster/cluster.c' 2026-01-27 01:38:19,567 wheel INFO adding 'Bio/Cluster/cluster.h' 2026-01-27 01:38:19,567 wheel INFO adding 'Bio/Cluster/clustermodule.c' 2026-01-27 01:38:19,568 wheel INFO adding 'Bio/Compass/__init__.py' 2026-01-27 01:38:19,569 wheel INFO adding 'Bio/Data/CodonTable.py' 2026-01-27 01:38:19,569 wheel INFO adding 'Bio/Data/IUPACData.py' 2026-01-27 01:38:19,570 wheel INFO adding 'Bio/Data/PDBData.py' 2026-01-27 01:38:19,570 wheel INFO adding 'Bio/Data/__init__.py' 2026-01-27 01:38:19,571 wheel INFO adding 'Bio/Emboss/Primer3.py' 2026-01-27 01:38:19,571 wheel INFO adding 'Bio/Emboss/PrimerSearch.py' 2026-01-27 01:38:19,572 wheel INFO adding 'Bio/Emboss/__init__.py' 2026-01-27 01:38:19,572 wheel INFO adding 'Bio/Entrez/Parser.py' 2026-01-27 01:38:19,573 wheel INFO adding 'Bio/Entrez/__init__.py' 2026-01-27 01:38:19,574 wheel INFO adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent' 2026-01-27 01:38:19,575 wheel INFO adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent' 2026-01-27 01:38:19,575 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd' 2026-01-27 01:38:19,576 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd' 2026-01-27 01:38:19,576 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd' 2026-01-27 01:38:19,577 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd' 2026-01-27 01:38:19,577 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd' 2026-01-27 01:38:19,578 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd' 2026-01-27 01:38:19,578 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd' 2026-01-27 01:38:19,579 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd' 2026-01-27 01:38:19,579 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd' 2026-01-27 01:38:19,580 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd' 2026-01-27 01:38:19,580 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.dtd' 2026-01-27 01:38:19,581 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd' 2026-01-27 01:38:19,581 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.dtd' 2026-01-27 01:38:19,581 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd' 2026-01-27 01:38:19,582 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.dtd' 2026-01-27 01:38:19,582 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd' 2026-01-27 01:38:19,582 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd' 2026-01-27 01:38:19,583 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd' 2026-01-27 01:38:19,583 wheel INFO adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent' 2026-01-27 01:38:19,584 wheel INFO adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent' 2026-01-27 01:38:19,585 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd' 2026-01-27 01:38:19,585 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent' 2026-01-27 01:38:19,586 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent' 2026-01-27 01:38:19,587 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent' 2026-01-27 01:38:19,588 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent' 2026-01-27 01:38:19,588 wheel INFO adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent' 2026-01-27 01:38:19,590 wheel INFO adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent' 2026-01-27 01:38:19,590 wheel INFO adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent' 2026-01-27 01:38:19,591 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent' 2026-01-27 01:38:19,592 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common1-3.ent' 2026-01-27 01:38:19,594 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent' 2026-01-27 01:38:19,595 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent' 2026-01-27 01:38:19,595 wheel INFO adding 'Bio/Entrez/DTDs/JATS-display1-3.ent' 2026-01-27 01:38:19,596 wheel INFO adding 'Bio/Entrez/DTDs/JATS-format1-3.ent' 2026-01-27 01:38:19,597 wheel INFO adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent' 2026-01-27 01:38:19,598 wheel INFO adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent' 2026-01-27 01:38:19,598 wheel INFO adding 'Bio/Entrez/DTDs/JATS-link1-3.ent' 2026-01-27 01:38:19,599 wheel INFO adding 'Bio/Entrez/DTDs/JATS-list1-3.ent' 2026-01-27 01:38:19,600 wheel INFO adding 'Bio/Entrez/DTDs/JATS-math1-3.ent' 2026-01-27 01:38:19,600 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent' 2026-01-27 01:38:19,601 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent' 2026-01-27 01:38:19,601 wheel INFO adding 'Bio/Entrez/DTDs/JATS-modules1-3.ent' 2026-01-27 01:38:19,602 wheel INFO adding 'Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent' 2026-01-27 01:38:19,603 wheel INFO adding 'Bio/Entrez/DTDs/JATS-notat1-3.ent' 2026-01-27 01:38:19,603 wheel INFO adding 'Bio/Entrez/DTDs/JATS-para1-3.ent' 2026-01-27 01:38:19,604 wheel INFO adding 'Bio/Entrez/DTDs/JATS-phrase1-3.ent' 2026-01-27 01:38:19,605 wheel INFO adding 'Bio/Entrez/DTDs/JATS-references1-3.ent' 2026-01-27 01:38:19,605 wheel INFO adding 'Bio/Entrez/DTDs/JATS-related-object1-3.ent' 2026-01-27 01:38:19,606 wheel INFO adding 'Bio/Entrez/DTDs/JATS-section1-3.ent' 2026-01-27 01:38:19,606 wheel INFO adding 'Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent' 2026-01-27 01:38:19,607 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.dtd' 2026-01-27 01:38:19,607 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.mod.dtd' 2026-01-27 01:38:19,608 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd' 2026-01-27 01:38:19,608 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd' 2026-01-27 01:38:19,609 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.dtd' 2026-01-27 01:38:19,609 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.mod.dtd' 2026-01-27 01:38:19,610 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.dtd' 2026-01-27 01:38:19,610 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd' 2026-01-27 01:38:19,611 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.dtd' 2026-01-27 01:38:19,611 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.mod.dtd' 2026-01-27 01:38:19,611 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.dtd' 2026-01-27 01:38:19,612 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd' 2026-01-27 01:38:19,612 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.dtd' 2026-01-27 01:38:19,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd' 2026-01-27 01:38:19,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.dtd' 2026-01-27 01:38:19,613 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd' 2026-01-27 01:38:19,614 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.dtd' 2026-01-27 01:38:19,614 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd' 2026-01-27 01:38:19,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.dtd' 2026-01-27 01:38:19,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd' 2026-01-27 01:38:19,615 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.dtd' 2026-01-27 01:38:19,616 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd' 2026-01-27 01:38:19,616 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.dtd' 2026-01-27 01:38:19,617 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd' 2026-01-27 01:38:19,617 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.dtd' 2026-01-27 01:38:19,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd' 2026-01-27 01:38:19,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entity.mod.dtd' 2026-01-27 01:38:19,618 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.dtd' 2026-01-27 01:38:19,619 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd' 2026-01-27 01:38:19,619 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.dtd' 2026-01-27 01:38:19,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd' 2026-01-27 01:38:19,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.dtd' 2026-01-27 01:38:19,620 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd' 2026-01-27 01:38:19,621 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.dtd' 2026-01-27 01:38:19,621 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd' 2026-01-27 01:38:19,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.dtd' 2026-01-27 01:38:19,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.mod.dtd' 2026-01-27 01:38:19,622 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.dtd' 2026-01-27 01:38:19,623 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.mod.dtd' 2026-01-27 01:38:19,623 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.dtd' 2026-01-27 01:38:19,623 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd' 2026-01-27 01:38:19,624 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.dtd' 2026-01-27 01:38:19,624 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd' 2026-01-27 01:38:19,625 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.dtd' 2026-01-27 01:38:19,625 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd' 2026-01-27 01:38:19,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.dtd' 2026-01-27 01:38:19,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd' 2026-01-27 01:38:19,626 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.dtd' 2026-01-27 01:38:19,627 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.mod.dtd' 2026-01-27 01:38:19,628 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.dtd' 2026-01-27 01:38:19,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.mod.dtd' 2026-01-27 01:38:19,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.dtd' 2026-01-27 01:38:19,629 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.mod.dtd' 2026-01-27 01:38:19,630 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.dtd' 2026-01-27 01:38:19,630 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd' 2026-01-27 01:38:19,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.dtd' 2026-01-27 01:38:19,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.mod.dtd' 2026-01-27 01:38:19,631 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.dtd' 2026-01-27 01:38:19,632 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd' 2026-01-27 01:38:19,632 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.dtd' 2026-01-27 01:38:19,633 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd' 2026-01-27 01:38:19,633 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.dtd' 2026-01-27 01:38:19,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.mod.dtd' 2026-01-27 01:38:19,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.dtd' 2026-01-27 01:38:19,634 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.mod.dtd' 2026-01-27 01:38:19,635 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.dtd' 2026-01-27 01:38:19,635 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.mod.dtd' 2026-01-27 01:38:19,635 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.dtd' 2026-01-27 01:38:19,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd' 2026-01-27 01:38:19,636 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.dtd' 2026-01-27 01:38:19,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.mod.dtd' 2026-01-27 01:38:19,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.dtd' 2026-01-27 01:38:19,637 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.mod.dtd' 2026-01-27 01:38:19,638 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.dtd' 2026-01-27 01:38:19,638 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd' 2026-01-27 01:38:19,638 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.dtd' 2026-01-27 01:38:19,639 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd' 2026-01-27 01:38:19,639 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.dtd' 2026-01-27 01:38:19,640 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd' 2026-01-27 01:38:19,640 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.dtd' 2026-01-27 01:38:19,640 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd' 2026-01-27 01:38:19,641 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.dtd' 2026-01-27 01:38:19,641 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd' 2026-01-27 01:38:19,642 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.dtd' 2026-01-27 01:38:19,642 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd' 2026-01-27 01:38:19,642 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.dtd' 2026-01-27 01:38:19,643 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd' 2026-01-27 01:38:19,643 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.dtd' 2026-01-27 01:38:19,644 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd' 2026-01-27 01:38:19,644 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.dtd' 2026-01-27 01:38:19,644 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd' 2026-01-27 01:38:19,645 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.dtd' 2026-01-27 01:38:19,645 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd' 2026-01-27 01:38:19,646 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.dtd' 2026-01-27 01:38:19,646 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd' 2026-01-27 01:38:19,646 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.dtd' 2026-01-27 01:38:19,647 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.mod.dtd' 2026-01-27 01:38:19,647 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Systems.dtd' 2026-01-27 01:38:19,648 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.dtd' 2026-01-27 01:38:19,648 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd' 2026-01-27 01:38:19,648 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.dtd' 2026-01-27 01:38:19,649 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd' 2026-01-27 01:38:19,649 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.dtd' 2026-01-27 01:38:19,649 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.mod.dtd' 2026-01-27 01:38:19,650 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_all.dtd' 2026-01-27 01:38:19,650 wheel INFO adding 'Bio/Entrez/DTDs/NSE.dtd' 2026-01-27 01:38:19,651 wheel INFO adding 'Bio/Entrez/DTDs/NSE.mod.dtd' 2026-01-27 01:38:19,651 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.dtd' 2026-01-27 01:38:19,652 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.mod.dtd' 2026-01-27 01:38:19,652 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.dtd' 2026-01-27 01:38:19,653 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.mod.dtd' 2026-01-27 01:38:19,653 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.dtd' 2026-01-27 01:38:19,653 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.mod.dtd' 2026-01-27 01:38:19,654 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.dtd' 2026-01-27 01:38:19,654 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.mod.dtd' 2026-01-27 01:38:19,654 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.dtd' 2026-01-27 01:38:19,655 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.mod.dtd' 2026-01-27 01:38:19,655 wheel INFO adding 'Bio/Entrez/DTDs/XHTMLtablesetup.ent' 2026-01-27 01:38:19,656 wheel INFO adding 'Bio/Entrez/DTDs/archivearticle.dtd' 2026-01-27 01:38:19,657 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-classes.ent' 2026-01-27 01:38:19,657 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-mixes.ent' 2026-01-27 01:38:19,658 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-models.ent' 2026-01-27 01:38:19,658 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-modules.ent' 2026-01-27 01:38:19,659 wheel INFO adding 'Bio/Entrez/DTDs/articlemeta.ent' 2026-01-27 01:38:19,660 wheel INFO adding 'Bio/Entrez/DTDs/backmatter.ent' 2026-01-27 01:38:19,660 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_100301.dtd' 2026-01-27 01:38:19,661 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_110101.dtd' 2026-01-27 01:38:19,661 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_120101.dtd' 2026-01-27 01:38:19,661 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_130101.dtd' 2026-01-27 01:38:19,662 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_140101.dtd' 2026-01-27 01:38:19,662 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_150101.dtd' 2026-01-27 01:38:19,662 wheel INFO adding 'Bio/Entrez/DTDs/chars.ent' 2026-01-27 01:38:19,663 wheel INFO adding 'Bio/Entrez/DTDs/common.ent' 2026-01-27 01:38:19,665 wheel INFO adding 'Bio/Entrez/DTDs/default-classes.ent' 2026-01-27 01:38:19,665 wheel INFO adding 'Bio/Entrez/DTDs/default-mixes.ent' 2026-01-27 01:38:19,666 wheel INFO adding 'Bio/Entrez/DTDs/display.ent' 2026-01-27 01:38:19,667 wheel INFO adding 'Bio/Entrez/DTDs/eInfo_020511.dtd' 2026-01-27 01:38:19,667 wheel INFO adding 'Bio/Entrez/DTDs/eLink_090910.dtd' 2026-01-27 01:38:19,667 wheel INFO adding 'Bio/Entrez/DTDs/eLink_101123.dtd' 2026-01-27 01:38:19,668 wheel INFO adding 'Bio/Entrez/DTDs/ePost_020511.dtd' 2026-01-27 01:38:19,668 wheel INFO adding 'Bio/Entrez/DTDs/eSearch_020511.dtd' 2026-01-27 01:38:19,669 wheel INFO adding 'Bio/Entrez/DTDs/eSpell.dtd' 2026-01-27 01:38:19,669 wheel INFO adding 'Bio/Entrez/DTDs/eSummary_041029.dtd' 2026-01-27 01:38:19,669 wheel INFO adding 'Bio/Entrez/DTDs/egquery.dtd' 2026-01-27 01:38:19,670 wheel INFO adding 'Bio/Entrez/DTDs/einfo.dtd' 2026-01-27 01:38:19,670 wheel INFO adding 'Bio/Entrez/DTDs/elink.dtd' 2026-01-27 01:38:19,670 wheel INFO adding 'Bio/Entrez/DTDs/elink_020122.dtd' 2026-01-27 01:38:19,671 wheel INFO adding 'Bio/Entrez/DTDs/epost.dtd' 2026-01-27 01:38:19,671 wheel INFO adding 'Bio/Entrez/DTDs/esearch.dtd' 2026-01-27 01:38:19,671 wheel INFO adding 'Bio/Entrez/DTDs/esummary-v1.dtd' 2026-01-27 01:38:19,672 wheel INFO adding 'Bio/Entrez/DTDs/esummary_clinvar.dtd' 2026-01-27 01:38:19,672 wheel INFO adding 'Bio/Entrez/DTDs/esummary_gene.dtd' 2026-01-27 01:38:19,673 wheel INFO adding 'Bio/Entrez/DTDs/format.ent' 2026-01-27 01:38:19,673 wheel INFO adding 'Bio/Entrez/DTDs/htmltable.dtd' 2026-01-27 01:38:19,673 wheel INFO adding 'Bio/Entrez/DTDs/isoamsa.ent' 2026-01-27 01:38:19,674 wheel INFO adding 'Bio/Entrez/DTDs/isoamsb.ent' 2026-01-27 01:38:19,674 wheel INFO adding 'Bio/Entrez/DTDs/isoamsc.ent' 2026-01-27 01:38:19,675 wheel INFO adding 'Bio/Entrez/DTDs/isoamsn.ent' 2026-01-27 01:38:19,675 wheel INFO adding 'Bio/Entrez/DTDs/isoamso.ent' 2026-01-27 01:38:19,675 wheel INFO adding 'Bio/Entrez/DTDs/isoamsr.ent' 2026-01-27 01:38:19,676 wheel INFO adding 'Bio/Entrez/DTDs/isobox.ent' 2026-01-27 01:38:19,676 wheel INFO adding 'Bio/Entrez/DTDs/isocyr1.ent' 2026-01-27 01:38:19,677 wheel INFO adding 'Bio/Entrez/DTDs/isocyr2.ent' 2026-01-27 01:38:19,677 wheel INFO adding 'Bio/Entrez/DTDs/isodia.ent' 2026-01-27 01:38:19,677 wheel INFO adding 'Bio/Entrez/DTDs/isogrk1.ent' 2026-01-27 01:38:19,678 wheel INFO adding 'Bio/Entrez/DTDs/isogrk2.ent' 2026-01-27 01:38:19,678 wheel INFO adding 'Bio/Entrez/DTDs/isogrk3.ent' 2026-01-27 01:38:19,679 wheel INFO adding 'Bio/Entrez/DTDs/isogrk4.ent' 2026-01-27 01:38:19,679 wheel INFO adding 'Bio/Entrez/DTDs/isolat1.ent' 2026-01-27 01:38:19,679 wheel INFO adding 'Bio/Entrez/DTDs/isolat2.ent' 2026-01-27 01:38:19,680 wheel INFO adding 'Bio/Entrez/DTDs/isomfrk.ent' 2026-01-27 01:38:19,680 wheel INFO adding 'Bio/Entrez/DTDs/isomopf.ent' 2026-01-27 01:38:19,681 wheel INFO adding 'Bio/Entrez/DTDs/isomscr.ent' 2026-01-27 01:38:19,681 wheel INFO adding 'Bio/Entrez/DTDs/isonum.ent' 2026-01-27 01:38:19,681 wheel INFO adding 'Bio/Entrez/DTDs/isopub.ent' 2026-01-27 01:38:19,682 wheel INFO adding 'Bio/Entrez/DTDs/isotech.ent' 2026-01-27 01:38:19,682 wheel INFO adding 'Bio/Entrez/DTDs/journalmeta.ent' 2026-01-27 01:38:19,683 wheel INFO adding 'Bio/Entrez/DTDs/link.ent' 2026-01-27 01:38:19,683 wheel INFO adding 'Bio/Entrez/DTDs/list.ent' 2026-01-27 01:38:19,684 wheel INFO adding 'Bio/Entrez/DTDs/math.ent' 2026-01-27 01:38:19,684 wheel INFO adding 'Bio/Entrez/DTDs/mathml-in-pubmed.mod' 2026-01-27 01:38:19,685 wheel INFO adding 'Bio/Entrez/DTDs/mathml2-qname-1.mod' 2026-01-27 01:38:19,685 wheel INFO adding 'Bio/Entrez/DTDs/mathml2.dtd' 2026-01-27 01:38:19,686 wheel INFO adding 'Bio/Entrez/DTDs/mathml3-qname1.mod' 2026-01-27 01:38:19,687 wheel INFO adding 'Bio/Entrez/DTDs/mathml3.dtd' 2026-01-27 01:38:19,687 wheel INFO adding 'Bio/Entrez/DTDs/mathmlsetup.ent' 2026-01-27 01:38:19,688 wheel INFO adding 'Bio/Entrez/DTDs/mmlalias.ent' 2026-01-27 01:38:19,688 wheel INFO adding 'Bio/Entrez/DTDs/mmlextra.ent' 2026-01-27 01:38:19,689 wheel INFO adding 'Bio/Entrez/DTDs/modules.ent' 2026-01-27 01:38:19,689 wheel INFO adding 'Bio/Entrez/DTDs/nlm-articleset-2.0.dtd' 2026-01-27 01:38:19,690 wheel INFO adding 'Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd' 2026-01-27 01:38:19,690 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_011101.dtd' 2026-01-27 01:38:19,691 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_080101.dtd' 2026-01-27 01:38:19,691 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_090101.dtd' 2026-01-27 01:38:19,692 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_011101.dtd' 2026-01-27 01:38:19,692 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_080101.dtd' 2026-01-27 01:38:19,692 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_090101.dtd' 2026-01-27 01:38:19,693 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd' 2026-01-27 01:38:19,693 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd' 2026-01-27 01:38:19,694 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd' 2026-01-27 01:38:19,694 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd' 2026-01-27 01:38:19,694 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd' 2026-01-27 01:38:19,695 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd' 2026-01-27 01:38:19,695 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd' 2026-01-27 01:38:19,696 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd' 2026-01-27 01:38:19,696 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd' 2026-01-27 01:38:19,697 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd' 2026-01-27 01:38:19,697 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd' 2026-01-27 01:38:19,698 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_080101.dtd' 2026-01-27 01:38:19,698 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_100101.dtd' 2026-01-27 01:38:19,698 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd' 2026-01-27 01:38:19,699 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd' 2026-01-27 01:38:19,699 wheel INFO adding 'Bio/Entrez/DTDs/notat.ent' 2026-01-27 01:38:19,700 wheel INFO adding 'Bio/Entrez/DTDs/para.ent' 2026-01-27 01:38:19,700 wheel INFO adding 'Bio/Entrez/DTDs/phrase.ent' 2026-01-27 01:38:19,701 wheel INFO adding 'Bio/Entrez/DTDs/pmc-1.dtd' 2026-01-27 01:38:19,701 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_020114.dtd' 2026-01-27 01:38:19,702 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_080101.dtd' 2026-01-27 01:38:19,702 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_090101.dtd' 2026-01-27 01:38:19,702 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100101.dtd' 2026-01-27 01:38:19,703 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100301.dtd' 2026-01-27 01:38:19,703 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_110101.dtd' 2026-01-27 01:38:19,703 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_120101.dtd' 2026-01-27 01:38:19,704 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130101.dtd' 2026-01-27 01:38:19,704 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130501.dtd' 2026-01-27 01:38:19,704 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_140101.dtd' 2026-01-27 01:38:19,705 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_150101.dtd' 2026-01-27 01:38:19,705 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180101.dtd' 2026-01-27 01:38:19,706 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180601.dtd' 2026-01-27 01:38:19,706 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_190101.dtd' 2026-01-27 01:38:19,707 wheel INFO adding 'Bio/Entrez/DTDs/references.ent' 2026-01-27 01:38:19,707 wheel INFO adding 'Bio/Entrez/DTDs/section.ent' 2026-01-27 01:38:19,708 wheel INFO adding 'Bio/Entrez/DTDs/taxon.dtd' 2026-01-27 01:38:19,708 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-inlstyle-1.mod' 2026-01-27 01:38:19,709 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-table-1.mod' 2026-01-27 01:38:19,709 wheel INFO adding 'Bio/Entrez/DTDs/xmlspecchars.ent' 2026-01-27 01:38:19,710 wheel INFO adding 'Bio/Entrez/XSDs/IPGReportSet.xsd' 2026-01-27 01:38:19,710 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd' 2026-01-27 01:38:19,710 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd' 2026-01-27 01:38:19,711 wheel INFO adding 'Bio/ExPASy/Enzyme.py' 2026-01-27 01:38:19,711 wheel INFO adding 'Bio/ExPASy/Prodoc.py' 2026-01-27 01:38:19,712 wheel INFO adding 'Bio/ExPASy/Prosite.py' 2026-01-27 01:38:19,712 wheel INFO adding 'Bio/ExPASy/ScanProsite.py' 2026-01-27 01:38:19,712 wheel INFO adding 'Bio/ExPASy/__init__.py' 2026-01-27 01:38:19,713 wheel INFO adding 'Bio/ExPASy/cellosaurus.py' 2026-01-27 01:38:19,713 wheel INFO adding 'Bio/GenBank/Record.py' 2026-01-27 01:38:19,714 wheel INFO adding 'Bio/GenBank/Scanner.py' 2026-01-27 01:38:19,715 wheel INFO adding 'Bio/GenBank/__init__.py' 2026-01-27 01:38:19,716 wheel INFO adding 'Bio/GenBank/utils.py' 2026-01-27 01:38:19,716 wheel INFO adding 'Bio/Geo/Record.py' 2026-01-27 01:38:19,716 wheel INFO adding 'Bio/Geo/__init__.py' 2026-01-27 01:38:19,717 wheel INFO adding 'Bio/Graphics/BasicChromosome.py' 2026-01-27 01:38:19,717 wheel INFO adding 'Bio/Graphics/ColorSpiral.py' 2026-01-27 01:38:19,718 wheel INFO adding 'Bio/Graphics/Comparative.py' 2026-01-27 01:38:19,718 wheel INFO adding 'Bio/Graphics/DisplayRepresentation.py' 2026-01-27 01:38:19,719 wheel INFO adding 'Bio/Graphics/Distribution.py' 2026-01-27 01:38:19,719 wheel INFO adding 'Bio/Graphics/KGML_vis.py' 2026-01-27 01:38:19,720 wheel INFO adding 'Bio/Graphics/__init__.py' 2026-01-27 01:38:19,720 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_AbstractDrawer.py' 2026-01-27 01:38:19,721 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CircularDrawer.py' 2026-01-27 01:38:19,722 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Colors.py' 2026-01-27 01:38:19,722 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CrossLink.py' 2026-01-27 01:38:19,722 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Diagram.py' 2026-01-27 01:38:19,723 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Feature.py' 2026-01-27 01:38:19,723 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_FeatureSet.py' 2026-01-27 01:38:19,724 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Graph.py' 2026-01-27 01:38:19,724 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_GraphSet.py' 2026-01-27 01:38:19,725 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_LinearDrawer.py' 2026-01-27 01:38:19,725 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Track.py' 2026-01-27 01:38:19,726 wheel INFO adding 'Bio/Graphics/GenomeDiagram/__init__.py' 2026-01-27 01:38:19,726 wheel INFO adding 'Bio/HMM/__init__.py' 2026-01-27 01:38:19,727 wheel INFO adding 'Bio/KEGG/REST.py' 2026-01-27 01:38:19,727 wheel INFO adding 'Bio/KEGG/__init__.py' 2026-01-27 01:38:19,727 wheel INFO adding 'Bio/KEGG/Compound/__init__.py' 2026-01-27 01:38:19,728 wheel INFO adding 'Bio/KEGG/Enzyme/__init__.py' 2026-01-27 01:38:19,728 wheel INFO adding 'Bio/KEGG/Gene/__init__.py' 2026-01-27 01:38:19,729 wheel INFO adding 'Bio/KEGG/KGML/KGML_parser.py' 2026-01-27 01:38:19,729 wheel INFO adding 'Bio/KEGG/KGML/KGML_pathway.py' 2026-01-27 01:38:19,730 wheel INFO adding 'Bio/KEGG/KGML/__init__.py' 2026-01-27 01:38:19,730 wheel INFO adding 'Bio/KEGG/Map/__init__.py' 2026-01-27 01:38:19,731 wheel INFO adding 'Bio/Medline/__init__.py' 2026-01-27 01:38:19,731 wheel INFO adding 'Bio/NMR/NOEtools.py' 2026-01-27 01:38:19,731 wheel INFO adding 'Bio/NMR/__init__.py' 2026-01-27 01:38:19,732 wheel INFO adding 'Bio/NMR/xpktools.py' 2026-01-27 01:38:19,732 wheel INFO adding 'Bio/Nexus/Nexus.py' 2026-01-27 01:38:19,733 wheel INFO adding 'Bio/Nexus/Nodes.py' 2026-01-27 01:38:19,734 wheel INFO adding 'Bio/Nexus/StandardData.py' 2026-01-27 01:38:19,734 wheel INFO adding 'Bio/Nexus/Trees.py' 2026-01-27 01:38:19,735 wheel INFO adding 'Bio/Nexus/__init__.py' 2026-01-27 01:38:19,735 wheel INFO adding 'Bio/Nexus/cnexus.c' 2026-01-27 01:38:19,736 wheel INFO adding 'Bio/Nexus/cnexus.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,737 wheel INFO adding 'Bio/PDB/AbstractPropertyMap.py' 2026-01-27 01:38:19,737 wheel INFO adding 'Bio/PDB/Atom.py' 2026-01-27 01:38:19,738 wheel INFO adding 'Bio/PDB/Chain.py' 2026-01-27 01:38:19,738 wheel INFO adding 'Bio/PDB/DSSP.py' 2026-01-27 01:38:19,738 wheel INFO adding 'Bio/PDB/Dice.py' 2026-01-27 01:38:19,739 wheel INFO adding 'Bio/PDB/Entity.py' 2026-01-27 01:38:19,739 wheel INFO adding 'Bio/PDB/FragmentMapper.py' 2026-01-27 01:38:19,740 wheel INFO adding 'Bio/PDB/HSExposure.py' 2026-01-27 01:38:19,740 wheel INFO adding 'Bio/PDB/MMCIF2Dict.py' 2026-01-27 01:38:19,741 wheel INFO adding 'Bio/PDB/MMCIFParser.py' 2026-01-27 01:38:19,741 wheel INFO adding 'Bio/PDB/Model.py' 2026-01-27 01:38:19,741 wheel INFO adding 'Bio/PDB/NACCESS.py' 2026-01-27 01:38:19,742 wheel INFO adding 'Bio/PDB/NeighborSearch.py' 2026-01-27 01:38:19,742 wheel INFO adding 'Bio/PDB/PDBExceptions.py' 2026-01-27 01:38:19,743 wheel INFO adding 'Bio/PDB/PDBIO.py' 2026-01-27 01:38:19,743 wheel INFO adding 'Bio/PDB/PDBList.py' 2026-01-27 01:38:19,744 wheel INFO adding 'Bio/PDB/PDBMLParser.py' 2026-01-27 01:38:19,744 wheel INFO adding 'Bio/PDB/PDBParser.py' 2026-01-27 01:38:19,745 wheel INFO adding 'Bio/PDB/PICIO.py' 2026-01-27 01:38:19,745 wheel INFO adding 'Bio/PDB/PSEA.py' 2026-01-27 01:38:19,746 wheel INFO adding 'Bio/PDB/Polypeptide.py' 2026-01-27 01:38:19,746 wheel INFO adding 'Bio/PDB/Residue.py' 2026-01-27 01:38:19,747 wheel INFO adding 'Bio/PDB/ResidueDepth.py' 2026-01-27 01:38:19,747 wheel INFO adding 'Bio/PDB/SASA.py' 2026-01-27 01:38:19,748 wheel INFO adding 'Bio/PDB/SCADIO.py' 2026-01-27 01:38:19,748 wheel INFO adding 'Bio/PDB/Selection.py' 2026-01-27 01:38:19,749 wheel INFO adding 'Bio/PDB/Structure.py' 2026-01-27 01:38:19,749 wheel INFO adding 'Bio/PDB/StructureAlignment.py' 2026-01-27 01:38:19,749 wheel INFO adding 'Bio/PDB/StructureBuilder.py' 2026-01-27 01:38:19,750 wheel INFO adding 'Bio/PDB/Superimposer.py' 2026-01-27 01:38:19,750 wheel INFO adding 'Bio/PDB/__init__.py' 2026-01-27 01:38:19,751 wheel INFO adding 'Bio/PDB/_bcif_helper.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,751 wheel INFO adding 'Bio/PDB/alphafold_db.py' 2026-01-27 01:38:19,752 wheel INFO adding 'Bio/PDB/bcifhelpermodule.c' 2026-01-27 01:38:19,752 wheel INFO adding 'Bio/PDB/binary_cif.py' 2026-01-27 01:38:19,753 wheel INFO adding 'Bio/PDB/ccealign.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,754 wheel INFO adding 'Bio/PDB/ccealignmodule.c' 2026-01-27 01:38:19,754 wheel INFO adding 'Bio/PDB/cealign.py' 2026-01-27 01:38:19,755 wheel INFO adding 'Bio/PDB/ic_data.py' 2026-01-27 01:38:19,756 wheel INFO adding 'Bio/PDB/ic_rebuild.py' 2026-01-27 01:38:19,756 wheel INFO adding 'Bio/PDB/internal_coords.py' 2026-01-27 01:38:19,758 wheel INFO adding 'Bio/PDB/kdtrees.c' 2026-01-27 01:38:19,759 wheel INFO adding 'Bio/PDB/kdtrees.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,760 wheel INFO adding 'Bio/PDB/mmcifio.py' 2026-01-27 01:38:19,760 wheel INFO adding 'Bio/PDB/parse_pdb_header.py' 2026-01-27 01:38:19,761 wheel INFO adding 'Bio/PDB/qcprot.py' 2026-01-27 01:38:19,761 wheel INFO adding 'Bio/PDB/vectors.py' 2026-01-27 01:38:19,762 wheel INFO adding 'Bio/PDB/mmtf/DefaultParser.py' 2026-01-27 01:38:19,762 wheel INFO adding 'Bio/PDB/mmtf/__init__.py' 2026-01-27 01:38:19,763 wheel INFO adding 'Bio/PDB/mmtf/mmtfio.py' 2026-01-27 01:38:19,763 wheel INFO adding 'Bio/Pathway/__init__.py' 2026-01-27 01:38:19,764 wheel INFO adding 'Bio/Pathway/Rep/Graph.py' 2026-01-27 01:38:19,764 wheel INFO adding 'Bio/Pathway/Rep/MultiGraph.py' 2026-01-27 01:38:19,764 wheel INFO adding 'Bio/Pathway/Rep/__init__.py' 2026-01-27 01:38:19,765 wheel INFO adding 'Bio/Phylo/BaseTree.py' 2026-01-27 01:38:19,766 wheel INFO adding 'Bio/Phylo/CDAO.py' 2026-01-27 01:38:19,766 wheel INFO adding 'Bio/Phylo/CDAOIO.py' 2026-01-27 01:38:19,767 wheel INFO adding 'Bio/Phylo/Consensus.py' 2026-01-27 01:38:19,767 wheel INFO adding 'Bio/Phylo/NeXML.py' 2026-01-27 01:38:19,767 wheel INFO adding 'Bio/Phylo/NeXMLIO.py' 2026-01-27 01:38:19,768 wheel INFO adding 'Bio/Phylo/Newick.py' 2026-01-27 01:38:19,768 wheel INFO adding 'Bio/Phylo/NewickIO.py' 2026-01-27 01:38:19,769 wheel INFO adding 'Bio/Phylo/NexusIO.py' 2026-01-27 01:38:19,769 wheel INFO adding 'Bio/Phylo/PhyloXML.py' 2026-01-27 01:38:19,770 wheel INFO adding 'Bio/Phylo/PhyloXMLIO.py' 2026-01-27 01:38:19,771 wheel INFO adding 'Bio/Phylo/TreeConstruction.py' 2026-01-27 01:38:19,771 wheel INFO adding 'Bio/Phylo/__init__.py' 2026-01-27 01:38:19,772 wheel INFO adding 'Bio/Phylo/_cdao_owl.py' 2026-01-27 01:38:19,773 wheel INFO adding 'Bio/Phylo/_io.py' 2026-01-27 01:38:19,773 wheel INFO adding 'Bio/Phylo/_utils.py' 2026-01-27 01:38:19,774 wheel INFO adding 'Bio/Phylo/PAML/__init__.py' 2026-01-27 01:38:19,774 wheel INFO adding 'Bio/Phylo/PAML/_paml.py' 2026-01-27 01:38:19,775 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py' 2026-01-27 01:38:19,775 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py' 2026-01-27 01:38:19,776 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py' 2026-01-27 01:38:19,776 wheel INFO adding 'Bio/Phylo/PAML/baseml.py' 2026-01-27 01:38:19,776 wheel INFO adding 'Bio/Phylo/PAML/chi2.py' 2026-01-27 01:38:19,777 wheel INFO adding 'Bio/Phylo/PAML/codeml.py' 2026-01-27 01:38:19,777 wheel INFO adding 'Bio/Phylo/PAML/yn00.py' 2026-01-27 01:38:19,778 wheel INFO adding 'Bio/PopGen/__init__.py' 2026-01-27 01:38:19,778 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py' 2026-01-27 01:38:19,778 wheel INFO adding 'Bio/PopGen/GenePop/LargeFileParser.py' 2026-01-27 01:38:19,779 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py' 2026-01-27 01:38:19,779 wheel INFO adding 'Bio/Restriction/PrintFormat.py' 2026-01-27 01:38:19,780 wheel INFO adding 'Bio/Restriction/Restriction.py' 2026-01-27 01:38:19,782 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py' 2026-01-27 01:38:19,786 wheel INFO adding 'Bio/Restriction/__init__.py' 2026-01-27 01:38:19,786 wheel INFO adding 'Bio/SCOP/Cla.py' 2026-01-27 01:38:19,787 wheel INFO adding 'Bio/SCOP/Des.py' 2026-01-27 01:38:19,787 wheel INFO adding 'Bio/SCOP/Dom.py' 2026-01-27 01:38:19,787 wheel INFO adding 'Bio/SCOP/Hie.py' 2026-01-27 01:38:19,788 wheel INFO adding 'Bio/SCOP/Raf.py' 2026-01-27 01:38:19,788 wheel INFO adding 'Bio/SCOP/Residues.py' 2026-01-27 01:38:19,789 wheel INFO adding 'Bio/SCOP/__init__.py' 2026-01-27 01:38:19,789 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py' 2026-01-27 01:38:19,790 wheel INFO adding 'Bio/SearchIO/BlatIO.py' 2026-01-27 01:38:19,790 wheel INFO adding 'Bio/SearchIO/FastaIO.py' 2026-01-27 01:38:19,791 wheel INFO adding 'Bio/SearchIO/__init__.py' 2026-01-27 01:38:19,792 wheel INFO adding 'Bio/SearchIO/_index.py' 2026-01-27 01:38:19,792 wheel INFO adding 'Bio/SearchIO/_utils.py' 2026-01-27 01:38:19,793 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py' 2026-01-27 01:38:19,793 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py' 2026-01-27 01:38:19,794 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py' 2026-01-27 01:38:19,795 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py' 2026-01-27 01:38:19,795 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py' 2026-01-27 01:38:19,796 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py' 2026-01-27 01:38:19,796 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py' 2026-01-27 01:38:19,796 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py' 2026-01-27 01:38:19,797 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py' 2026-01-27 01:38:19,797 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py' 2026-01-27 01:38:19,798 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py' 2026-01-27 01:38:19,798 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py' 2026-01-27 01:38:19,799 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py' 2026-01-27 01:38:19,799 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py' 2026-01-27 01:38:19,800 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py' 2026-01-27 01:38:19,800 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py' 2026-01-27 01:38:19,801 wheel INFO adding 'Bio/SearchIO/InfernalIO/__init__.py' 2026-01-27 01:38:19,801 wheel INFO adding 'Bio/SearchIO/InfernalIO/_base.py' 2026-01-27 01:38:19,802 wheel INFO adding 'Bio/SearchIO/InfernalIO/infernal_tab.py' 2026-01-27 01:38:19,802 wheel INFO adding 'Bio/SearchIO/InfernalIO/infernal_text.py' 2026-01-27 01:38:19,803 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py' 2026-01-27 01:38:19,803 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py' 2026-01-27 01:38:19,803 wheel INFO adding 'Bio/SearchIO/_model/__init__.py' 2026-01-27 01:38:19,804 wheel INFO adding 'Bio/SearchIO/_model/_base.py' 2026-01-27 01:38:19,804 wheel INFO adding 'Bio/SearchIO/_model/hit.py' 2026-01-27 01:38:19,805 wheel INFO adding 'Bio/SearchIO/_model/hsp.py' 2026-01-27 01:38:19,806 wheel INFO adding 'Bio/SearchIO/_model/query.py' 2026-01-27 01:38:19,806 wheel INFO adding 'Bio/SeqIO/AbiIO.py' 2026-01-27 01:38:19,807 wheel INFO adding 'Bio/SeqIO/AceIO.py' 2026-01-27 01:38:19,807 wheel INFO adding 'Bio/SeqIO/FastaIO.py' 2026-01-27 01:38:19,808 wheel INFO adding 'Bio/SeqIO/GckIO.py' 2026-01-27 01:38:19,808 wheel INFO adding 'Bio/SeqIO/GfaIO.py' 2026-01-27 01:38:19,809 wheel INFO adding 'Bio/SeqIO/IgIO.py' 2026-01-27 01:38:19,809 wheel INFO adding 'Bio/SeqIO/InsdcIO.py' 2026-01-27 01:38:19,810 wheel INFO adding 'Bio/SeqIO/Interfaces.py' 2026-01-27 01:38:19,810 wheel INFO adding 'Bio/SeqIO/NibIO.py' 2026-01-27 01:38:19,811 wheel INFO adding 'Bio/SeqIO/PdbIO.py' 2026-01-27 01:38:19,811 wheel INFO adding 'Bio/SeqIO/PhdIO.py' 2026-01-27 01:38:19,812 wheel INFO adding 'Bio/SeqIO/PirIO.py' 2026-01-27 01:38:19,812 wheel INFO adding 'Bio/SeqIO/QualityIO.py' 2026-01-27 01:38:19,813 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py' 2026-01-27 01:38:19,814 wheel INFO adding 'Bio/SeqIO/SffIO.py' 2026-01-27 01:38:19,815 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py' 2026-01-27 01:38:19,815 wheel INFO adding 'Bio/SeqIO/SwissIO.py' 2026-01-27 01:38:19,816 wheel INFO adding 'Bio/SeqIO/TabIO.py' 2026-01-27 01:38:19,816 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py' 2026-01-27 01:38:19,817 wheel INFO adding 'Bio/SeqIO/UniprotIO.py' 2026-01-27 01:38:19,817 wheel INFO adding 'Bio/SeqIO/XdnaIO.py' 2026-01-27 01:38:19,818 wheel INFO adding 'Bio/SeqIO/__init__.py' 2026-01-27 01:38:19,818 wheel INFO adding 'Bio/SeqIO/_index.py' 2026-01-27 01:38:19,819 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c' 2026-01-27 01:38:19,820 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,820 wheel INFO adding 'Bio/SeqUtils/CheckSum.py' 2026-01-27 01:38:19,821 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py' 2026-01-27 01:38:19,821 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py' 2026-01-27 01:38:19,822 wheel INFO adding 'Bio/SeqUtils/ProtParam.py' 2026-01-27 01:38:19,823 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py' 2026-01-27 01:38:19,823 wheel INFO adding 'Bio/SeqUtils/__init__.py' 2026-01-27 01:38:19,824 wheel INFO adding 'Bio/SeqUtils/lcc.py' 2026-01-27 01:38:19,824 wheel INFO adding 'Bio/Sequencing/Ace.py' 2026-01-27 01:38:19,825 wheel INFO adding 'Bio/Sequencing/Phd.py' 2026-01-27 01:38:19,825 wheel INFO adding 'Bio/Sequencing/__init__.py' 2026-01-27 01:38:19,825 wheel INFO adding 'Bio/SwissProt/KeyWList.py' 2026-01-27 01:38:19,826 wheel INFO adding 'Bio/SwissProt/__init__.py' 2026-01-27 01:38:19,826 wheel INFO adding 'Bio/TogoWS/__init__.py' 2026-01-27 01:38:19,827 wheel INFO adding 'Bio/UniGene/__init__.py' 2026-01-27 01:38:19,827 wheel INFO adding 'Bio/UniProt/GOA.py' 2026-01-27 01:38:19,828 wheel INFO adding 'Bio/UniProt/__init__.py' 2026-01-27 01:38:19,828 wheel INFO adding 'Bio/codonalign/__init__.py' 2026-01-27 01:38:19,829 wheel INFO adding 'Bio/codonalign/codonalignment.py' 2026-01-27 01:38:19,830 wheel INFO adding 'Bio/codonalign/codonseq.py' 2026-01-27 01:38:19,830 wheel INFO adding 'Bio/motifs/__init__.py' 2026-01-27 01:38:19,831 wheel INFO adding 'Bio/motifs/_pwm.c' 2026-01-27 01:38:19,832 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so' 2026-01-27 01:38:19,832 wheel INFO adding 'Bio/motifs/alignace.py' 2026-01-27 01:38:19,833 wheel INFO adding 'Bio/motifs/clusterbuster.py' 2026-01-27 01:38:19,833 wheel INFO adding 'Bio/motifs/mast.py' 2026-01-27 01:38:19,834 wheel INFO adding 'Bio/motifs/matrix.py' 2026-01-27 01:38:19,834 wheel INFO adding 'Bio/motifs/meme.py' 2026-01-27 01:38:19,834 wheel INFO adding 'Bio/motifs/minimal.py' 2026-01-27 01:38:19,835 wheel INFO adding 'Bio/motifs/pfm.py' 2026-01-27 01:38:19,835 wheel INFO adding 'Bio/motifs/thresholds.py' 2026-01-27 01:38:19,836 wheel INFO adding 'Bio/motifs/transfac.py' 2026-01-27 01:38:19,836 wheel INFO adding 'Bio/motifs/xms.py' 2026-01-27 01:38:19,837 wheel INFO adding 'Bio/motifs/jaspar/__init__.py' 2026-01-27 01:38:19,837 wheel INFO adding 'Bio/motifs/jaspar/db.py' 2026-01-27 01:38:19,838 wheel INFO adding 'Bio/phenotype/__init__.py' 2026-01-27 01:38:19,838 wheel INFO adding 'Bio/phenotype/phen_micro.py' 2026-01-27 01:38:19,839 wheel INFO adding 'Bio/phenotype/pm_fitting.py' 2026-01-27 01:38:19,839 wheel INFO adding 'BioSQL/BioSeq.py' 2026-01-27 01:38:19,840 wheel INFO adding 'BioSQL/BioSeqDatabase.py' 2026-01-27 01:38:19,841 wheel INFO adding 'BioSQL/DBUtils.py' 2026-01-27 01:38:19,841 wheel INFO adding 'BioSQL/Loader.py' 2026-01-27 01:38:19,842 wheel INFO adding 'BioSQL/__init__.py' 2026-01-27 01:38:19,842 wheel INFO adding 'BioSQL/py.typed' 2026-01-27 01:38:19,843 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE' 2026-01-27 01:38:19,843 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst' 2026-01-27 01:38:19,843 wheel INFO adding 'biopython-1.86.dist-info/METADATA' 2026-01-27 01:38:19,844 wheel INFO adding 'biopython-1.86.dist-info/WHEEL' 2026-01-27 01:38:19,844 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt' 2026-01-27 01:38:19,848 wheel INFO adding 'biopython-1.86.dist-info/RECORD' 2026-01-27 01:38:19,851 root INFO removing build/bdist.linux-loongarch64/wheel 2026-01-27 01:38:19,884 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_loongarch64.whl biopython-1.86-cp312-cp312-linux_loongarch64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.12 >>> py3-biopython-pyc*: Package size: 5.9 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-loongarch64.so.1 >>> py3-biopython*: Package size: 11.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.86-r0.apk >>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:38:24 +0000 elapsed time 0h 0m 31s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20260127.013754) ( 2/31) Purging py3-gpep517-pyc (19-r1) ( 3/31) Purging py3-gpep517 (19-r1) ( 4/31) Purging py3-installer-pyc (0.7.0-r2) ( 5/31) Purging py3-installer (0.7.0-r2) ( 6/31) Purging py3-setuptools-pyc (80.9.0-r2) ( 7/31) Purging py3-setuptools (80.9.0-r2) ( 8/31) Purging py3-wheel-pyc (0.46.1-r0) ( 9/31) Purging py3-wheel (0.46.1-r0) (10/31) Purging py3-packaging-pyc (25.0-r0) (11/31) Purging py3-packaging (25.0-r0) (12/31) Purging py3-parsing-pyc (3.3.1-r0) (13/31) Purging py3-parsing (3.3.1-r0) (14/31) Purging py3-numpy-dev (2.3.5-r0) (15/31) Purging py3-numpy-tests (2.3.5-r0) (16/31) Purging py3-numpy-pyc (2.3.5-r0) (17/31) Purging py3-numpy (2.3.5-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.12.12-r0) (20/31) Purging python3-pyc (3.12.12-r0) (21/31) Purging python3-pycache-pyc0 (3.12.12-r0) (22/31) Purging pyc (3.12.12-r0) (23/31) Purging python3 (3.12.12-r0) (24/31) Purging gdbm (1.26-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.5.2-r0) (27/31) Purging libgfortran (15.2.0-r2) (28/31) Purging libpanelw (6.6_p20251231-r0) (29/31) Purging mpdecimal (4.0.1-r0) (30/31) Purging sqlite-libs (3.51.2-r1) (31/31) Purging xz-libs (5.8.2-r0) Executing busybox-1.37.0-r31.trigger OK: 269.3 MiB in 103 packages >>> py3-biopython: Updating the community/loongarch64 repository index... >>> py3-biopython: Signing the index...