>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:37:59 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r0) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.2-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20251231-r0) ( 7/31) Installing sqlite-libs (3.51.2-r1) ( 8/31) Installing python3 (3.12.12-r0) ( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0) (10/31) Installing pyc (3.12.12-r0) (11/31) Installing py3-numpy-pyc (2.3.5-r0) (12/31) Installing python3-pyc (3.12.12-r0) (13/31) Installing libgfortran (15.2.0-r2) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.3.5-r0) (16/31) Installing py3-numpy-tests (2.3.5-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (19-r1) (20/31) Installing py3-gpep517-pyc (19-r1) (21/31) Installing py3-parsing (3.3.1-r0) (22/31) Installing py3-parsing-pyc (3.3.1-r0) (23/31) Installing py3-packaging (25.0-r0) (24/31) Installing py3-packaging-pyc (25.0-r0) (25/31) Installing py3-setuptools (80.9.0-r2) (26/31) Installing py3-setuptools-pyc (80.9.0-r2) (27/31) Installing py3-wheel (0.46.1-r0) (28/31) Installing py3-wheel-pyc (0.46.1-r0) (29/31) Installing py3-numpy-dev (2.3.5-r0) (30/31) Installing python3-dev (3.12.12-r0) (31/31) Installing .makedepends-py3-biopython (20260127.013800) Executing busybox-1.37.0-r31.trigger OK: 450.5 MiB in 137 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz Connecting to files.pythonhosted.org (151.101.192.223:443) Connecting to files.pythonhosted.org (151.101.192.223:443) saving to '/var/cache/distfiles/biopython-1.86.tar.gz.part' biopython-1.86.tar.g 0% | | 16384 0:20:09 ETA biopython-1.86.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/biopython-1.86.tar.gz.part' saved /var/cache/distfiles/biopython-1.86.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz /var/cache/distfiles/biopython-1.86.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.86.tar.gz... 2026-01-27 01:38:04,804 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2026-01-27 01:38:04,842 root INFO running bdist_wheel 2026-01-27 01:38:04,874 root INFO running build 2026-01-27 01:38:04,874 root INFO running build_py 2026-01-27 01:38:04,881 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,881 root INFO copying Bio/pairwise2.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,882 root INFO copying Bio/bgzf.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,882 root INFO copying Bio/File.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,882 root INFO copying Bio/SeqFeature.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,883 root INFO copying Bio/SeqRecord.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,883 root INFO copying Bio/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,883 root INFO copying Bio/_utils.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,884 root INFO copying Bio/Seq.py -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:04,884 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Affy 2026-01-27 01:38:04,884 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-ppc64le-cpython-312/Bio/Affy 2026-01-27 01:38:04,885 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Affy 2026-01-27 01:38:04,886 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,886 root INFO copying Bio/Align/msf.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,886 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,886 root INFO copying Bio/Align/tabular.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,887 root INFO copying Bio/Align/psl.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,887 root INFO copying Bio/Align/chain.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,887 root INFO copying Bio/Align/phylip.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,888 root INFO copying Bio/Align/maf.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,888 root INFO copying Bio/Align/clustal.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,888 root INFO copying Bio/Align/mauve.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,889 root INFO copying Bio/Align/nexus.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,889 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,889 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,890 root INFO copying Bio/Align/fasta.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,890 root INFO copying Bio/Align/analysis.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,890 root INFO copying Bio/Align/bed.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,891 root INFO copying Bio/Align/a2m.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,891 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,891 root INFO copying Bio/Align/sam.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,892 root INFO copying Bio/Align/hhr.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,892 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,892 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,893 root INFO copying Bio/Align/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,893 root INFO copying Bio/Align/emboss.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,893 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:04,894 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:04,894 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:04,895 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,895 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,895 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,896 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,896 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,896 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,897 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,897 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,897 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,898 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,898 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,898 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/AlignIO 2026-01-27 01:38:04,899 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Alphabet 2026-01-27 01:38:04,899 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Alphabet 2026-01-27 01:38:04,899 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,900 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,900 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,900 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,901 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,901 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-ppc64le-cpython-312/Bio/Blast 2026-01-27 01:38:04,901 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/CAPS 2026-01-27 01:38:04,901 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/CAPS 2026-01-27 01:38:04,902 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:04,902 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:04,903 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/codonalign 2026-01-27 01:38:04,903 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-ppc64le-cpython-312/Bio/codonalign 2026-01-27 01:38:04,903 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-ppc64le-cpython-312/Bio/codonalign 2026-01-27 01:38:04,903 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/codonalign 2026-01-27 01:38:04,904 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Compass 2026-01-27 01:38:04,904 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Compass 2026-01-27 01:38:04,905 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Data 2026-01-27 01:38:04,905 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-ppc64le-cpython-312/Bio/Data 2026-01-27 01:38:04,905 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-ppc64le-cpython-312/Bio/Data 2026-01-27 01:38:04,905 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-ppc64le-cpython-312/Bio/Data 2026-01-27 01:38:04,906 root INFO copying Bio/Data/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Data 2026-01-27 01:38:04,906 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Emboss 2026-01-27 01:38:04,906 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-ppc64le-cpython-312/Bio/Emboss 2026-01-27 01:38:04,907 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-ppc64le-cpython-312/Bio/Emboss 2026-01-27 01:38:04,907 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Emboss 2026-01-27 01:38:04,907 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Entrez 2026-01-27 01:38:04,908 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez 2026-01-27 01:38:04,908 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez 2026-01-27 01:38:04,910 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,910 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,910 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,910 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,911 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,911 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,911 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/ExPASy 2026-01-27 01:38:04,912 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/GenBank 2026-01-27 01:38:04,912 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-ppc64le-cpython-312/Bio/GenBank 2026-01-27 01:38:04,912 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/GenBank 2026-01-27 01:38:04,913 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-ppc64le-cpython-312/Bio/GenBank 2026-01-27 01:38:04,913 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-ppc64le-cpython-312/Bio/GenBank 2026-01-27 01:38:04,914 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Geo 2026-01-27 01:38:04,914 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Geo 2026-01-27 01:38:04,914 root INFO copying Bio/Geo/Record.py -> build/lib.linux-ppc64le-cpython-312/Bio/Geo 2026-01-27 01:38:04,915 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,915 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,915 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,915 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,916 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,916 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,916 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,917 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics 2026-01-27 01:38:04,917 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,918 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,918 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,918 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,919 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,919 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,919 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,920 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,920 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,920 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,921 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,921 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,921 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:04,922 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/HMM 2026-01-27 01:38:04,922 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/HMM 2026-01-27 01:38:04,922 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG 2026-01-27 01:38:04,922 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG 2026-01-27 01:38:04,923 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG 2026-01-27 01:38:04,923 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Compound 2026-01-27 01:38:04,923 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Compound 2026-01-27 01:38:04,924 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:38:04,924 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Enzyme 2026-01-27 01:38:04,924 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Gene 2026-01-27 01:38:04,925 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Gene 2026-01-27 01:38:04,925 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Map 2026-01-27 01:38:04,925 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Map 2026-01-27 01:38:04,926 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf 2026-01-27 01:38:04,926 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf 2026-01-27 01:38:04,926 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf 2026-01-27 01:38:04,927 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf 2026-01-27 01:38:04,927 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML 2026-01-27 01:38:04,927 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML 2026-01-27 01:38:04,928 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML 2026-01-27 01:38:04,928 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML 2026-01-27 01:38:04,928 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Medline 2026-01-27 01:38:04,929 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Medline 2026-01-27 01:38:04,929 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,929 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,930 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,930 root INFO copying Bio/motifs/mast.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,930 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,931 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,931 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,931 root INFO copying Bio/motifs/meme.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,932 root INFO copying Bio/motifs/xms.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,932 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,932 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,933 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:04,933 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/motifs/jaspar 2026-01-27 01:38:04,933 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs/jaspar 2026-01-27 01:38:04,933 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/motifs/jaspar 2026-01-27 01:38:04,934 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,934 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,935 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,935 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,935 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,936 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:04,936 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/NMR 2026-01-27 01:38:04,936 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-ppc64le-cpython-312/Bio/NMR 2026-01-27 01:38:04,937 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-ppc64le-cpython-312/Bio/NMR 2026-01-27 01:38:04,937 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/NMR 2026-01-27 01:38:04,937 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Pathway 2026-01-27 01:38:04,937 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Pathway 2026-01-27 01:38:04,938 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep 2026-01-27 01:38:04,938 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep 2026-01-27 01:38:04,938 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep 2026-01-27 01:38:04,939 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep 2026-01-27 01:38:04,940 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,940 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,941 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,941 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,941 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,942 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,942 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,942 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,943 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,943 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,943 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,944 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,944 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,944 root INFO copying Bio/PDB/Model.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,945 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,945 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,945 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,946 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,946 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,946 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,947 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,947 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,947 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,948 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,948 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,948 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,949 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,949 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,949 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,950 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,950 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,950 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,950 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,951 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,951 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,951 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,952 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,952 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,952 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,953 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,953 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:04,953 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/phenotype 2026-01-27 01:38:04,954 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-ppc64le-cpython-312/Bio/phenotype 2026-01-27 01:38:04,954 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-ppc64le-cpython-312/Bio/phenotype 2026-01-27 01:38:04,954 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/phenotype 2026-01-27 01:38:04,955 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/PopGen 2026-01-27 01:38:04,955 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/PopGen 2026-01-27 01:38:04,955 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:38:04,956 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:38:04,956 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:38:04,956 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop 2026-01-27 01:38:04,957 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Restriction 2026-01-27 01:38:04,957 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-ppc64le-cpython-312/Bio/Restriction 2026-01-27 01:38:04,957 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-ppc64le-cpython-312/Bio/Restriction 2026-01-27 01:38:04,958 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-ppc64le-cpython-312/Bio/Restriction 2026-01-27 01:38:04,958 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Restriction 2026-01-27 01:38:04,959 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,959 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,959 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,960 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,960 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,960 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,961 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,961 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SCOP 2026-01-27 01:38:04,962 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,962 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,962 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,962 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,963 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,963 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO 2026-01-27 01:38:04,964 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,964 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,964 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,964 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,965 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,965 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model 2026-01-27 01:38:04,966 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:38:04,966 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:38:04,966 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:38:04,966 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO 2026-01-27 01:38:04,967 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:04,967 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:04,967 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:04,968 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,968 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,968 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,969 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,969 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,969 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,970 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO 2026-01-27 01:38:04,970 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:38:04,970 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:38:04,971 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:38:04,971 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:38:04,971 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO 2026-01-27 01:38:04,972 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,972 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,972 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,973 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,973 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,973 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:04,974 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:04,974 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:04,974 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:04,975 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,975 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,976 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,976 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,976 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,977 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,977 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,977 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,978 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,978 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,978 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,979 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,979 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,979 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,980 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,980 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,980 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,981 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,981 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,981 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,982 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,982 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,982 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,983 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:04,983 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,983 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,984 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,984 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,984 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,985 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,985 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,985 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils 2026-01-27 01:38:04,986 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Sequencing 2026-01-27 01:38:04,986 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-ppc64le-cpython-312/Bio/Sequencing 2026-01-27 01:38:04,986 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-ppc64le-cpython-312/Bio/Sequencing 2026-01-27 01:38:04,986 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Sequencing 2026-01-27 01:38:04,987 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:38:04,987 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SVDSuperimposer 2026-01-27 01:38:04,988 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/SwissProt 2026-01-27 01:38:04,988 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-ppc64le-cpython-312/Bio/SwissProt 2026-01-27 01:38:04,988 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/SwissProt 2026-01-27 01:38:04,988 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/TogoWS 2026-01-27 01:38:04,989 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/TogoWS 2026-01-27 01:38:04,989 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,990 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,990 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,990 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,991 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,991 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,991 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,992 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,992 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,992 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,992 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,993 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,993 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,993 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,994 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,994 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,994 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo 2026-01-27 01:38:04,995 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,995 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,996 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,996 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,996 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,997 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,997 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,997 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,998 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,998 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML 2026-01-27 01:38:04,998 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/UniGene 2026-01-27 01:38:04,998 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/UniGene 2026-01-27 01:38:04,999 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/UniProt 2026-01-27 01:38:04,999 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-ppc64le-cpython-312/Bio/UniProt 2026-01-27 01:38:04,999 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-ppc64le-cpython-312/Bio/UniProt 2026-01-27 01:38:05,000 root INFO creating build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,000 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,001 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,001 root INFO copying BioSQL/Loader.py -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,001 root INFO copying BioSQL/__init__.py -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,002 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,002 root INFO running egg_info 2026-01-27 01:38:05,008 root INFO writing biopython.egg-info/PKG-INFO 2026-01-27 01:38:05,008 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-01-27 01:38:05,009 root INFO writing requirements to biopython.egg-info/requires.txt 2026-01-27 01:38:05,009 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-01-27 01:38:05,042 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-01-27 01:38:05,140 root INFO reading manifest template 'MANIFEST.in' 2026-01-27 01:38:05,305 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-01-27 01:38:05,316 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-01-27 01:38:05,324 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-01-27 01:38:05,330 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-01-27 01:38:05,337 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-01-27 01:38:05,344 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-01-27 01:38:05,358 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-01-27 01:38:05,358 root INFO adding license file 'LICENSE' 2026-01-27 01:38:05,358 root INFO adding license file 'LICENSE.rst' 2026-01-27 01:38:05,453 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2026-01-27 01:38:05,520 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:05,520 root INFO copying Bio/py.typed -> build/lib.linux-ppc64le-cpython-312/Bio 2026-01-27 01:38:05,520 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,521 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,521 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,521 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,522 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,522 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:05,523 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:05,523 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,523 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,524 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,524 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,524 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,525 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,525 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,525 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,526 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,526 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,526 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,527 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,527 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,527 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,528 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,528 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,528 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,529 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,529 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,529 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,530 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,530 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,530 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,531 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,531 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,531 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,532 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,532 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,532 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,533 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,533 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data 2026-01-27 01:38:05,533 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:05,534 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:05,534 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:05,534 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,535 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,535 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,535 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,536 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,536 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,536 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,537 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,537 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,537 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,538 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,538 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,538 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,539 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,539 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,539 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,540 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,540 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,540 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,541 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,541 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,541 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,542 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,542 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,542 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,543 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,543 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,543 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,544 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,544 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,544 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,545 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,545 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,546 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,546 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,546 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,547 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,547 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,548 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,548 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,548 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,549 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,549 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,549 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,550 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,550 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,550 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,551 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,551 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,551 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,552 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,552 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,552 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,553 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,553 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,553 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,554 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,554 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,554 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,555 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,555 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,555 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,556 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,556 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,556 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,557 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,557 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,557 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,558 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,558 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,558 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,559 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,559 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,559 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,560 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,560 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,560 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,561 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,561 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,561 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,562 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,562 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,562 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,563 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,563 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,563 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,564 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,564 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,564 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,565 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,565 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,565 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,566 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,566 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,566 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,567 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,567 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,567 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,568 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,568 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,568 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,569 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,569 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,569 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,570 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,570 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,570 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,571 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,571 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,571 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,572 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,572 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,572 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,573 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,573 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,573 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,574 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,574 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,574 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,575 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,575 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,575 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,576 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,576 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,576 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,577 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,577 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,577 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,578 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,578 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,578 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,579 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,579 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,579 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,580 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 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build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,619 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,619 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,619 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,620 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,620 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,620 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,621 root INFO copying 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Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,623 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,624 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,624 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,624 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,625 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,625 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,626 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,626 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,626 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,627 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,627 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,627 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,627 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,628 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,628 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,628 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,629 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,629 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,629 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,630 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,630 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,631 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,631 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,631 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,632 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs 2026-01-27 01:38:05,632 root INFO creating build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:38:05,632 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:38:05,632 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:38:05,633 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs 2026-01-27 01:38:05,633 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:05,633 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:05,634 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:05,634 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:05,634 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:05,635 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:05,635 root INFO copying BioSQL/py.typed -> build/lib.linux-ppc64le-cpython-312/BioSQL 2026-01-27 01:38:05,651 root INFO running build_ext 2026-01-27 01:38:05,654 root INFO building 'Bio.Align._aligncore' extension 2026-01-27 01:38:05,654 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/Align 2026-01-27 01:38:05,655 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-ppc64le-cpython-312/Bio/Align/_aligncore.o 2026-01-27 01:38:05,897 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Align/_aligncore.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:05,917 root INFO building 'Bio.Align._alignmentcounts' extension 2026-01-27 01:38:05,917 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-ppc64le-cpython-312/Bio/Align/_alignmentcounts.o 2026-01-27 01:38:06,622 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Align/_alignmentcounts.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:06,644 root INFO building 'Bio.Align._codonaligner' extension 2026-01-27 01:38:06,645 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-ppc64le-cpython-312/Bio/Align/_codonaligner.o 2026-01-27 01:38:07,166 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Align/_codonaligner.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:07,187 root INFO building 'Bio.Align._pairwisealigner' extension 2026-01-27 01:38:07,188 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.o 2026-01-27 01:38:14,669 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:14,689 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-01-27 01:38:14,689 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices 2026-01-27 01:38:14,690 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.o 2026-01-27 01:38:14,871 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:14,890 root INFO building 'Bio.cpairwise2' extension 2026-01-27 01:38:14,891 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-ppc64le-cpython-312/Bio/cpairwise2module.o 2026-01-27 01:38:15,209 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/cpairwise2.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:15,229 root INFO building 'Bio.Nexus.cnexus' extension 2026-01-27 01:38:15,229 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/Nexus 2026-01-27 01:38:15,230 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-ppc64le-cpython-312/Bio/Nexus/cnexus.o 2026-01-27 01:38:15,356 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Nexus/cnexus.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:15,374 root INFO building 'Bio.motifs._pwm' extension 2026-01-27 01:38:15,374 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/motifs 2026-01-27 01:38:15,375 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-ppc64le-cpython-312/Bio/motifs/_pwm.o 2026-01-27 01:38:15,520 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/motifs/_pwm.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:15,538 root INFO building 'Bio.Cluster._cluster' extension 2026-01-27 01:38:15,539 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/Cluster 2026-01-27 01:38:15,539 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-ppc64le-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:17,971 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-ppc64le-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-01-27 01:38:18,715 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/Cluster/cluster.o build/temp.linux-ppc64le-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/Cluster/_cluster.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:18,739 root INFO building 'Bio.PDB.ccealign' extension 2026-01-27 01:38:18,740 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/PDB 2026-01-27 01:38:18,741 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-ppc64le-cpython-312/Bio/PDB/ccealignmodule.o 2026-01-27 01:38:19,087 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/PDB/ccealign.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:19,106 root INFO building 'Bio.PDB.kdtrees' extension 2026-01-27 01:38:19,106 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-ppc64le-cpython-312/Bio/PDB/kdtrees.o 2026-01-27 01:38:19,541 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/PDB/kdtrees.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:19,559 root INFO building 'Bio.PDB._bcif_helper' extension 2026-01-27 01:38:19,560 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-ppc64le-cpython-312/Bio/PDB/bcifhelpermodule.o 2026-01-27 01:38:19,704 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/PDB/_bcif_helper.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:19,721 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-01-27 01:38:19,722 root INFO creating build/temp.linux-ppc64le-cpython-312/Bio/SeqIO 2026-01-27 01:38:19,722 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-ppc64le-cpython-312/Bio/SeqIO/_twoBitIO.o 2026-01-27 01:38:19,898 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-ppc64le-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-powerpc64le-linux-musl.so 2026-01-27 01:38:19,934 root INFO installing to build/bdist.linux-ppc64le/wheel 2026-01-27 01:38:19,934 root INFO running install 2026-01-27 01:38:19,968 root INFO running install_lib 2026-01-27 01:38:19,974 root INFO creating build/bdist.linux-ppc64le/wheel 2026-01-27 01:38:19,975 root INFO creating build/bdist.linux-ppc64le/wheel/BioSQL 2026-01-27 01:38:19,975 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,975 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,975 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/Loader.py -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,976 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/py.typed -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,976 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/__init__.py -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,976 root INFO copying build/lib.linux-ppc64le-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-ppc64le/wheel/./BioSQL 2026-01-27 01:38:19,976 root INFO creating build/bdist.linux-ppc64le/wheel/Bio 2026-01-27 01:38:19,977 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Pathway 2026-01-27 01:38:19,977 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Pathway/Rep 2026-01-27 01:38:19,977 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-ppc64le/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,977 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-ppc64le/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,978 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Pathway/Rep 2026-01-27 01:38:19,978 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Pathway 2026-01-27 01:38:19,978 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/codonalign 2026-01-27 01:38:19,978 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-ppc64le/wheel/./Bio/codonalign 2026-01-27 01:38:19,979 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-ppc64le/wheel/./Bio/codonalign 2026-01-27 01:38:19,979 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/codonalign 2026-01-27 01:38:19,979 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/pairwise2.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:19,979 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/cpairwise2.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:19,980 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Nexus 2026-01-27 01:38:19,980 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,980 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,981 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/cnexus.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,981 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,981 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,981 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,982 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-ppc64le/wheel/./Bio/Nexus 2026-01-27 01:38:19,982 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/phenotype 2026-01-27 01:38:19,982 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-ppc64le/wheel/./Bio/phenotype 2026-01-27 01:38:19,982 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-ppc64le/wheel/./Bio/phenotype 2026-01-27 01:38:19,983 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/phenotype 2026-01-27 01:38:19,983 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Align 2026-01-27 01:38:19,983 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/msf.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,983 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,984 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,984 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,984 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,985 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,985 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/psl.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,985 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,985 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/chain.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,986 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,986 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/maf.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,986 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,986 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,987 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,987 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,987 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,987 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,988 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,988 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_aligncore.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,988 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/bed.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,988 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,989 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Align/substitution_matrices 2026-01-27 01:38:19,989 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,989 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,989 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,990 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,990 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,990 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,990 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,991 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,991 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,991 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,991 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,992 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,992 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,992 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,992 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,992 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,993 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,993 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,993 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,993 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,994 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,994 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,994 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,994 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,994 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,995 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,995 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,995 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,995 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,996 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,996 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,996 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,996 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,996 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices/data 2026-01-27 01:38:19,997 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align/substitution_matrices 2026-01-27 01:38:19,997 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_codonaligner.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,997 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,997 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/sam.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,998 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,998 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,998 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,998 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,999 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,999 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,999 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:19,999 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:20,000 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Align/_alignmentcounts.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Align 2026-01-27 01:38:20,000 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO 2026-01-27 01:38:20,000 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,001 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,001 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,001 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,001 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,002 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,002 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HmmerIO 2026-01-27 01:38:20,002 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:20,002 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:20,003 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/HHsuiteIO 2026-01-27 01:38:20,003 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/InterproscanIO 2026-01-27 01:38:20,003 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:20,003 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InterproscanIO 2026-01-27 01:38:20,004 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/_model 2026-01-27 01:38:20,004 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:20,004 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:20,004 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:20,005 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:20,005 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/_model 2026-01-27 01:38:20,005 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/BlastIO 2026-01-27 01:38:20,005 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:20,006 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:20,006 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/BlastIO 2026-01-27 01:38:20,006 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO 2026-01-27 01:38:20,006 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO 2026-01-27 01:38:20,007 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/InfernalIO 2026-01-27 01:38:20,007 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:20,007 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:20,007 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:20,008 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/InfernalIO 2026-01-27 01:38:20,008 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,008 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,008 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,009 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,009 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,009 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO/ExonerateIO 2026-01-27 01:38:20,009 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO 2026-01-27 01:38:20,010 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO 2026-01-27 01:38:20,010 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-ppc64le/wheel/./Bio/SearchIO 2026-01-27 01:38:20,010 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/bgzf.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,010 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/UniProt 2026-01-27 01:38:20,011 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-ppc64le/wheel/./Bio/UniProt 2026-01-27 01:38:20,011 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/UniProt 2026-01-27 01:38:20,011 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Compass 2026-01-27 01:38:20,011 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Compass 2026-01-27 01:38:20,012 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/ExPASy 2026-01-27 01:38:20,012 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,012 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,012 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,013 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,013 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,013 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/ExPASy 2026-01-27 01:38:20,013 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Emboss 2026-01-27 01:38:20,014 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-ppc64le/wheel/./Bio/Emboss 2026-01-27 01:38:20,014 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-ppc64le/wheel/./Bio/Emboss 2026-01-27 01:38:20,014 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Emboss 2026-01-27 01:38:20,014 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/motifs 2026-01-27 01:38:20,015 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,015 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,015 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,015 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,016 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/motifs/jaspar 2026-01-27 01:38:20,016 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:20,016 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs/jaspar 2026-01-27 01:38:20,016 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,016 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,017 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,017 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/_pwm.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,017 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,017 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,018 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,018 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,018 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-ppc64le/wheel/./Bio/motifs 2026-01-27 01:38:20,018 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Medline 2026-01-27 01:38:20,019 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Medline 2026-01-27 01:38:20,019 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Geo 2026-01-27 01:38:20,019 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Geo 2026-01-27 01:38:20,019 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-ppc64le/wheel/./Bio/Geo 2026-01-27 01:38:20,020 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/HMM 2026-01-27 01:38:20,020 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/HMM 2026-01-27 01:38:20,020 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/GenBank 2026-01-27 01:38:20,021 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-ppc64le/wheel/./Bio/GenBank 2026-01-27 01:38:20,021 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/GenBank 2026-01-27 01:38:20,021 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-ppc64le/wheel/./Bio/GenBank 2026-01-27 01:38:20,021 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-ppc64le/wheel/./Bio/GenBank 2026-01-27 01:38:20,022 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/AlignIO 2026-01-27 01:38:20,022 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,022 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,022 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,023 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,023 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,023 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,023 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,023 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,024 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,024 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,024 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/AlignIO 2026-01-27 01:38:20,025 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SCOP 2026-01-27 01:38:20,025 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,025 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,025 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,025 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,026 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,026 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,026 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SCOP 2026-01-27 01:38:20,026 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Blast 2026-01-27 01:38:20,027 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-ppc64le/wheel/./Bio/Blast 2026-01-27 01:38:20,027 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-ppc64le/wheel/./Bio/Blast 2026-01-27 01:38:20,027 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-ppc64le/wheel/./Bio/Blast 2026-01-27 01:38:20,027 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Blast 2026-01-27 01:38:20,028 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-ppc64le/wheel/./Bio/Blast 2026-01-27 01:38:20,028 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Cluster 2026-01-27 01:38:20,028 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-ppc64le/wheel/./Bio/Cluster 2026-01-27 01:38:20,028 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-ppc64le/wheel/./Bio/Cluster 2026-01-27 01:38:20,029 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Cluster/_cluster.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/Cluster 2026-01-27 01:38:20,029 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-ppc64le/wheel/./Bio/Cluster 2026-01-27 01:38:20,029 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Cluster 2026-01-27 01:38:20,030 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/File.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,030 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/PDB 2026-01-27 01:38:20,030 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,031 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,031 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,031 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,031 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,031 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/ccealign.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,032 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,032 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,032 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,032 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,033 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,033 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,033 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,033 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,034 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,034 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,034 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,034 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,035 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,035 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,035 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/PDB/mmtf 2026-01-27 01:38:20,035 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:20,036 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:20,036 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB/mmtf 2026-01-27 01:38:20,036 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,036 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,037 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,037 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/_bcif_helper.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,037 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,037 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,038 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,038 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,038 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,038 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,038 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,039 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,039 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,039 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,039 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,040 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,040 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,040 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,040 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/kdtrees.cpython-312-powerpc64le-linux-musl.so -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,041 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,041 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,041 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,041 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,042 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,042 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,042 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,042 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-ppc64le/wheel/./Bio/PDB 2026-01-27 01:38:20,043 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Alphabet 2026-01-27 01:38:20,043 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Alphabet 2026-01-27 01:38:20,043 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,043 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/NMR 2026-01-27 01:38:20,044 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-ppc64le/wheel/./Bio/NMR 2026-01-27 01:38:20,044 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-ppc64le/wheel/./Bio/NMR 2026-01-27 01:38:20,044 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/NMR 2026-01-27 01:38:20,044 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Entrez 2026-01-27 01:38:20,045 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Entrez/DTDs 2026-01-27 01:38:20,045 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,045 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,046 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,046 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,046 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,046 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,047 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,047 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,047 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,047 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,048 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,048 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,048 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,048 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,048 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,049 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,049 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,049 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,049 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,050 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,050 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,050 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,050 root INFO 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INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,052 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,052 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,052 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,053 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,053 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,053 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,053 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,054 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,054 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,054 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,054 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,055 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,055 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,055 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,055 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,055 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,056 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,056 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,056 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,056 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,057 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,057 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,057 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,057 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,058 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,058 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,058 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,058 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,059 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,059 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,059 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,059 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,060 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,060 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,060 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,060 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,061 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,061 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,061 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,061 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,061 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,062 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,062 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,062 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,062 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,063 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,063 root INFO 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build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,108 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,108 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,109 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,109 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,109 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,109 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,110 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,110 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,110 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,110 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,111 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,111 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,111 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,111 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,112 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,112 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,112 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,112 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,112 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,113 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/DTDs 2026-01-27 01:38:20,113 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez 2026-01-27 01:38:20,113 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez 2026-01-27 01:38:20,114 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Entrez/XSDs 2026-01-27 01:38:20,114 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:20,114 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:20,114 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-ppc64le/wheel/./Bio/Entrez/XSDs 2026-01-27 01:38:20,115 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SeqUtils 2026-01-27 01:38:20,115 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,115 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,115 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,116 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,116 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,116 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,116 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqUtils 2026-01-27 01:38:20,117 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Data 2026-01-27 01:38:20,117 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-ppc64le/wheel/./Bio/Data 2026-01-27 01:38:20,117 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-ppc64le/wheel/./Bio/Data 2026-01-27 01:38:20,117 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-ppc64le/wheel/./Bio/Data 2026-01-27 01:38:20,118 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Data 2026-01-27 01:38:20,118 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,118 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG 2026-01-27 01:38:20,118 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG/Map 2026-01-27 01:38:20,119 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/Map 2026-01-27 01:38:20,119 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG/KGML 2026-01-27 01:38:20,119 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:20,119 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:20,120 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/KGML 2026-01-27 01:38:20,120 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG 2026-01-27 01:38:20,120 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG/Gene 2026-01-27 01:38:20,120 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/Gene 2026-01-27 01:38:20,121 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG/Enzyme 2026-01-27 01:38:20,121 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/Enzyme 2026-01-27 01:38:20,121 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG 2026-01-27 01:38:20,121 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/KEGG/Compound 2026-01-27 01:38:20,122 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/KEGG/Compound 2026-01-27 01:38:20,122 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/UniGene 2026-01-27 01:38:20,122 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/UniGene 2026-01-27 01:38:20,123 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Graphics 2026-01-27 01:38:20,123 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,123 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,123 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,123 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,124 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,124 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,124 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,124 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,125 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,125 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,125 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,125 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,126 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,126 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,126 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,126 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,127 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,127 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics/GenomeDiagram 2026-01-27 01:38:20,127 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,127 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Graphics 2026-01-27 01:38:20,128 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/TogoWS 2026-01-27 01:38:20,128 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/TogoWS 2026-01-27 01:38:20,128 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Affy 2026-01-27 01:38:20,128 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-ppc64le/wheel/./Bio/Affy 2026-01-27 01:38:20,129 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Affy 2026-01-27 01:38:20,129 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/CAPS 2026-01-27 01:38:20,129 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/CAPS 2026-01-27 01:38:20,129 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,130 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Sequencing 2026-01-27 01:38:20,130 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-ppc64le/wheel/./Bio/Sequencing 2026-01-27 01:38:20,130 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-ppc64le/wheel/./Bio/Sequencing 2026-01-27 01:38:20,130 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Sequencing 2026-01-27 01:38:20,131 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/py.typed -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,131 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Restriction 2026-01-27 01:38:20,131 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-ppc64le/wheel/./Bio/Restriction 2026-01-27 01:38:20,131 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-ppc64le/wheel/./Bio/Restriction 2026-01-27 01:38:20,132 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-ppc64le/wheel/./Bio/Restriction 2026-01-27 01:38:20,132 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Restriction 2026-01-27 01:38:20,133 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SVDSuperimposer 2026-01-27 01:38:20,133 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SVDSuperimposer 2026-01-27 01:38:20,133 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SwissProt 2026-01-27 01:38:20,133 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-ppc64le/wheel/./Bio/SwissProt 2026-01-27 01:38:20,134 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SwissProt 2026-01-27 01:38:20,134 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,134 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Phylo 2026-01-27 01:38:20,134 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,135 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,135 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,135 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,135 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,136 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,136 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,136 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,136 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,136 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,137 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,137 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,137 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/Phylo/PAML 2026-01-27 01:38:20,138 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,138 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,138 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,138 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,138 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,139 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,139 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,139 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,139 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo/PAML 2026-01-27 01:38:20,140 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,140 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,140 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,140 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-ppc64le/wheel/./Bio/Phylo 2026-01-27 01:38:20,141 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/_utils.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,141 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/Seq.py -> build/bdist.linux-ppc64le/wheel/./Bio 2026-01-27 01:38:20,141 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/PopGen 2026-01-27 01:38:20,142 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/PopGen/GenePop 2026-01-27 01:38:20,142 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:20,142 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-ppc64le/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:20,142 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/PopGen/GenePop 2026-01-27 01:38:20,142 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/PopGen 2026-01-27 01:38:20,143 root INFO creating build/bdist.linux-ppc64le/wheel/Bio/SeqIO 2026-01-27 01:38:20,143 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,143 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,143 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,144 root INFO 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build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,145 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,146 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,146 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,146 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,146 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,147 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,147 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,147 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,147 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,147 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,148 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,148 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,148 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,148 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,149 root INFO copying build/lib.linux-ppc64le-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-ppc64le/wheel/./Bio/SeqIO 2026-01-27 01:38:20,149 root INFO running install_egg_info 2026-01-27 01:38:20,156 root INFO Copying biopython.egg-info to build/bdist.linux-ppc64le/wheel/./biopython-1.86-py3.12.egg-info 2026-01-27 01:38:20,157 root INFO running install_scripts 2026-01-27 01:38:20,166 root INFO creating build/bdist.linux-ppc64le/wheel/biopython-1.86.dist-info/WHEEL 2026-01-27 01:38:20,166 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.86/.dist/.tmp-3f_fqsqe/biopython-1.86-cp312-cp312-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it 2026-01-27 01:38:20,167 wheel INFO adding 'Bio/File.py' 2026-01-27 01:38:20,167 wheel INFO adding 'Bio/Seq.py' 2026-01-27 01:38:20,168 wheel 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2026-01-27 01:38:20,368 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c' 2026-01-27 01:38:20,368 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-powerpc64le-linux-musl.so' 2026-01-27 01:38:20,369 wheel INFO adding 'Bio/SeqUtils/CheckSum.py' 2026-01-27 01:38:20,369 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py' 2026-01-27 01:38:20,369 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py' 2026-01-27 01:38:20,370 wheel INFO adding 'Bio/SeqUtils/ProtParam.py' 2026-01-27 01:38:20,370 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py' 2026-01-27 01:38:20,370 wheel INFO adding 'Bio/SeqUtils/__init__.py' 2026-01-27 01:38:20,371 wheel INFO adding 'Bio/SeqUtils/lcc.py' 2026-01-27 01:38:20,371 wheel INFO adding 'Bio/Sequencing/Ace.py' 2026-01-27 01:38:20,371 wheel INFO adding 'Bio/Sequencing/Phd.py' 2026-01-27 01:38:20,372 wheel INFO adding 'Bio/Sequencing/__init__.py' 2026-01-27 01:38:20,372 wheel INFO adding 'Bio/SwissProt/KeyWList.py' 2026-01-27 01:38:20,372 wheel INFO adding 'Bio/SwissProt/__init__.py' 2026-01-27 01:38:20,373 wheel INFO adding 'Bio/TogoWS/__init__.py' 2026-01-27 01:38:20,373 wheel INFO adding 'Bio/UniGene/__init__.py' 2026-01-27 01:38:20,373 wheel INFO adding 'Bio/UniProt/GOA.py' 2026-01-27 01:38:20,374 wheel INFO adding 'Bio/UniProt/__init__.py' 2026-01-27 01:38:20,374 wheel INFO adding 'Bio/codonalign/__init__.py' 2026-01-27 01:38:20,374 wheel INFO adding 'Bio/codonalign/codonalignment.py' 2026-01-27 01:38:20,375 wheel INFO adding 'Bio/codonalign/codonseq.py' 2026-01-27 01:38:20,375 wheel INFO adding 'Bio/motifs/__init__.py' 2026-01-27 01:38:20,375 wheel INFO adding 'Bio/motifs/_pwm.c' 2026-01-27 01:38:20,376 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-powerpc64le-linux-musl.so' 2026-01-27 01:38:20,376 wheel INFO adding 'Bio/motifs/alignace.py' 2026-01-27 01:38:20,376 wheel INFO adding 'Bio/motifs/clusterbuster.py' 2026-01-27 01:38:20,377 wheel INFO adding 'Bio/motifs/mast.py' 2026-01-27 01:38:20,377 wheel INFO adding 'Bio/motifs/matrix.py' 2026-01-27 01:38:20,377 wheel INFO adding 'Bio/motifs/meme.py' 2026-01-27 01:38:20,378 wheel INFO adding 'Bio/motifs/minimal.py' 2026-01-27 01:38:20,378 wheel INFO adding 'Bio/motifs/pfm.py' 2026-01-27 01:38:20,378 wheel INFO adding 'Bio/motifs/thresholds.py' 2026-01-27 01:38:20,378 wheel INFO adding 'Bio/motifs/transfac.py' 2026-01-27 01:38:20,379 wheel INFO adding 'Bio/motifs/xms.py' 2026-01-27 01:38:20,379 wheel INFO adding 'Bio/motifs/jaspar/__init__.py' 2026-01-27 01:38:20,379 wheel INFO adding 'Bio/motifs/jaspar/db.py' 2026-01-27 01:38:20,380 wheel INFO adding 'Bio/phenotype/__init__.py' 2026-01-27 01:38:20,380 wheel INFO adding 'Bio/phenotype/phen_micro.py' 2026-01-27 01:38:20,380 wheel INFO adding 'Bio/phenotype/pm_fitting.py' 2026-01-27 01:38:20,381 wheel INFO adding 'BioSQL/BioSeq.py' 2026-01-27 01:38:20,381 wheel INFO adding 'BioSQL/BioSeqDatabase.py' 2026-01-27 01:38:20,381 wheel INFO adding 'BioSQL/DBUtils.py' 2026-01-27 01:38:20,382 wheel INFO adding 'BioSQL/Loader.py' 2026-01-27 01:38:20,382 wheel INFO adding 'BioSQL/__init__.py' 2026-01-27 01:38:20,382 wheel INFO adding 'BioSQL/py.typed' 2026-01-27 01:38:20,383 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE' 2026-01-27 01:38:20,383 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst' 2026-01-27 01:38:20,383 wheel INFO adding 'biopython-1.86.dist-info/METADATA' 2026-01-27 01:38:20,384 wheel INFO adding 'biopython-1.86.dist-info/WHEEL' 2026-01-27 01:38:20,384 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt' 2026-01-27 01:38:20,388 wheel INFO adding 'biopython-1.86.dist-info/RECORD' 2026-01-27 01:38:20,394 root INFO removing build/bdist.linux-ppc64le/wheel 2026-01-27 01:38:20,419 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_ppc64le.whl biopython-1.86-cp312-cp312-linux_ppc64le.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.12 >>> py3-biopython-pyc*: Package size: 5.9 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-ppc64le.so.1 >>> py3-biopython*: Package size: 11.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.86-r0.apk >>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:38:24 +0000 elapsed time 0h 0m 25s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20260127.013800) ( 2/31) Purging py3-gpep517-pyc (19-r1) ( 3/31) Purging py3-gpep517 (19-r1) ( 4/31) Purging py3-installer-pyc (0.7.0-r2) ( 5/31) Purging py3-installer (0.7.0-r2) ( 6/31) Purging py3-setuptools-pyc (80.9.0-r2) ( 7/31) Purging py3-setuptools (80.9.0-r2) ( 8/31) Purging py3-wheel-pyc (0.46.1-r0) ( 9/31) Purging py3-wheel (0.46.1-r0) (10/31) Purging py3-packaging-pyc (25.0-r0) (11/31) Purging py3-packaging (25.0-r0) (12/31) Purging py3-parsing-pyc (3.3.1-r0) (13/31) Purging py3-parsing (3.3.1-r0) (14/31) Purging py3-numpy-dev (2.3.5-r0) (15/31) Purging py3-numpy-tests (2.3.5-r0) (16/31) Purging py3-numpy-pyc (2.3.5-r0) (17/31) Purging py3-numpy (2.3.5-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.12.12-r0) (20/31) Purging python3-pyc (3.12.12-r0) (21/31) Purging python3-pycache-pyc0 (3.12.12-r0) (22/31) Purging pyc (3.12.12-r0) (23/31) Purging python3 (3.12.12-r0) (24/31) Purging gdbm (1.26-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.5.2-r0) (27/31) Purging libgfortran (15.2.0-r2) (28/31) Purging libpanelw (6.6_p20251231-r0) (29/31) Purging mpdecimal (4.0.1-r0) (30/31) Purging sqlite-libs (3.51.2-r1) (31/31) Purging xz-libs (5.8.2-r0) Executing busybox-1.37.0-r31.trigger OK: 288.7 MiB in 106 packages >>> py3-biopython: Updating the community/ppc64le repository index... >>> py3-biopython: Signing the index...