>>> py3-biopython: Building community/py3-biopython 1.82-r1 (using abuild 3.13.0-r0) started Fri, 19 Apr 2024 04:36:56 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/30) Installing openblas (0.3.27-r0) (2/30) Installing libbz2 (1.0.8-r6) (3/30) Installing libffi (3.4.6-r0) (4/30) Installing gdbm (1.23-r1) (5/30) Installing xz-libs (5.6.1-r3) (6/30) Installing mpdecimal (4.0.0-r0) (7/30) Installing libpanelw (6.4_p20240330-r0) (8/30) Installing readline (8.2.10-r0) (9/30) Installing sqlite-libs (3.45.3-r0) (10/30) Installing python3 (3.12.3-r1) (11/30) Installing python3-pycache-pyc0 (3.12.3-r1) (12/30) Installing pyc (3.12.3-r1) (13/30) Installing py3-numpy-pyc (1.25.2-r1) (14/30) Installing python3-pyc (3.12.3-r1) (15/30) Installing py3-numpy (1.25.2-r1) (16/30) Installing py3-installer (0.7.0-r2) (17/30) Installing py3-installer-pyc (0.7.0-r2) (18/30) Installing py3-gpep517 (15-r2) (19/30) Installing py3-gpep517-pyc (15-r2) (20/30) Installing py3-parsing (3.1.2-r1) (21/30) Installing py3-parsing-pyc (3.1.2-r1) (22/30) Installing py3-packaging (24.0-r1) (23/30) Installing py3-packaging-pyc (24.0-r1) (24/30) Installing py3-setuptools (69.5.1-r0) (25/30) Installing py3-setuptools-pyc (69.5.1-r0) (26/30) Installing py3-wheel (0.42.0-r1) (27/30) Installing py3-wheel-pyc (0.42.0-r1) (28/30) Installing py3-numpy-dev (1.25.2-r1) (29/30) Installing python3-dev (3.12.3-r1) (30/30) Installing .makedepends-py3-biopython (20240419.043701) Executing busybox-1.36.1-r25.trigger OK: 519 MiB in 132 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 9 18.5M 9 1743k 0 0 7168k 0 0:00:02 --:--:-- 0:00:02 7176k 100 18.5M 100 18.5M 0 0 19.8M 0 --:--:-- --:--:-- --:--:-- 19.8M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.82.tar.gz... 2024-04-19 04:37:10,168 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-04-19 04:37:10,286 root INFO running bdist_wheel 2024-04-19 04:37:10,357 root INFO running build 2024-04-19 04:37:10,357 root INFO running build_py 2024-04-19 04:37:10,368 root INFO creating build 2024-04-19 04:37:10,369 root INFO creating build/lib.linux-riscv64-cpython-312 2024-04-19 04:37:10,369 root INFO creating build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,370 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,372 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,374 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,375 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,376 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,378 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,379 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,380 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,381 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,383 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,384 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,385 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,387 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:10,389 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-19 04:37:10,390 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-19 04:37:10,391 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-04-19 04:37:10,393 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,394 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,395 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,396 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,397 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,398 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,400 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,401 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,402 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,403 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,403 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,404 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,405 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,406 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,408 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,409 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,410 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,412 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,413 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,414 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,415 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,416 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,417 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,418 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,419 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:10,421 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,421 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,422 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,424 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,424 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,425 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,426 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,427 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,428 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,429 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,430 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-04-19 04:37:10,432 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-04-19 04:37:10,432 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-04-19 04:37:10,434 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,435 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,436 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,437 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,438 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,439 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,440 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,440 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,441 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,442 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,443 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,444 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-04-19 04:37:10,446 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-04-19 04:37:10,446 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-04-19 04:37:10,448 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application 2024-04-19 04:37:10,448 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application 2024-04-19 04:37:10,450 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,450 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,452 root INFO copying Bio/Blast/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,452 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,453 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,454 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-04-19 04:37:10,456 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-04-19 04:37:10,456 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-04-19 04:37:10,457 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:10,458 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:10,460 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-19 04:37:10,460 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-19 04:37:10,461 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-19 04:37:10,462 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-04-19 04:37:10,464 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-04-19 04:37:10,464 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-04-19 04:37:10,466 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-19 04:37:10,466 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-19 04:37:10,468 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-19 04:37:10,469 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-19 04:37:10,470 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-04-19 04:37:10,471 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-19 04:37:10,472 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-19 04:37:10,473 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-19 04:37:10,474 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-19 04:37:10,475 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-04-19 04:37:10,476 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-19 04:37:10,477 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-19 04:37:10,478 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-04-19 04:37:10,480 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,480 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,481 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,482 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,483 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,484 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,485 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-04-19 04:37:10,486 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-19 04:37:10,487 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-19 04:37:10,488 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-19 04:37:10,489 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-19 04:37:10,490 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-04-19 04:37:10,492 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-19 04:37:10,492 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-19 04:37:10,493 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-04-19 04:37:10,495 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,495 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,496 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,497 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,498 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,499 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,500 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,501 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-04-19 04:37:10,502 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,503 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,504 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,505 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,506 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,507 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,508 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,509 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,510 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,511 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,512 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,514 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,514 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-19 04:37:10,516 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,517 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,518 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,518 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,520 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,520 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-04-19 04:37:10,522 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-19 04:37:10,523 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-19 04:37:10,523 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-04-19 04:37:10,525 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-04-19 04:37:10,525 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-04-19 04:37:10,527 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-04-19 04:37:10,527 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-04-19 04:37:10,529 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-04-19 04:37:10,529 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-04-19 04:37:10,531 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-04-19 04:37:10,531 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-04-19 04:37:10,532 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,533 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-19 04:37:10,534 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-19 04:37:10,534 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-19 04:37:10,535 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-04-19 04:37:10,537 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-19 04:37:10,537 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-19 04:37:10,539 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-19 04:37:10,540 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-04-19 04:37:10,541 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-04-19 04:37:10,541 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-04-19 04:37:10,543 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,544 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,544 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,545 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,546 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,547 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,548 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,549 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,550 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,551 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,552 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,553 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:10,554 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-19 04:37:10,555 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-19 04:37:10,556 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-04-19 04:37:10,557 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-19 04:37:10,558 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-19 04:37:10,559 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-04-19 04:37:10,560 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,561 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,562 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,563 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,564 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,565 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:10,567 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-19 04:37:10,568 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-19 04:37:10,569 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-19 04:37:10,570 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-04-19 04:37:10,571 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-04-19 04:37:10,571 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-04-19 04:37:10,573 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-19 04:37:10,574 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-19 04:37:10,574 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-19 04:37:10,575 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-04-19 04:37:10,578 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,579 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,580 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,581 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,582 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,583 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,583 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,584 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,585 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,586 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,587 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,588 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,589 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,590 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,591 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,592 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,593 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,594 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,595 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,596 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,597 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,598 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,599 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,600 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,601 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,602 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,603 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,604 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,605 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,606 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,607 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,608 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,609 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,610 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,611 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,612 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,613 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,613 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:10,616 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-19 04:37:10,617 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-19 04:37:10,618 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-19 04:37:10,619 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-04-19 04:37:10,620 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-04-19 04:37:10,620 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-04-19 04:37:10,622 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,622 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,623 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,624 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,625 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,626 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-04-19 04:37:10,628 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-19 04:37:10,628 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-19 04:37:10,630 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-19 04:37:10,634 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-19 04:37:10,635 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-04-19 04:37:10,637 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,638 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,639 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,640 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,641 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,642 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,643 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,644 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-04-19 04:37:10,646 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,647 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,648 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,649 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,650 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,652 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-04-19 04:37:10,653 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,654 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,655 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,656 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,657 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,658 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-04-19 04:37:10,659 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-19 04:37:10,660 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-19 04:37:10,661 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-19 04:37:10,662 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-04-19 04:37:10,663 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-19 04:37:10,664 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-19 04:37:10,665 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-19 04:37:10,666 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,667 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,668 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,669 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,670 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,671 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,672 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-19 04:37:10,674 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,674 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,675 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,676 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,677 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,678 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-19 04:37:10,679 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-19 04:37:10,680 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-19 04:37:10,681 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-19 04:37:10,683 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,684 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,685 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,686 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,687 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,688 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,689 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,690 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,691 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,692 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,693 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,694 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,696 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,697 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,698 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,699 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,700 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,701 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,702 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,704 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,704 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,706 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,706 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:10,708 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,709 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,710 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,711 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,712 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,713 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,714 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,715 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-04-19 04:37:10,716 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-19 04:37:10,717 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-19 04:37:10,718 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-19 04:37:10,719 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-04-19 04:37:10,720 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-19 04:37:10,721 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-19 04:37:10,722 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-19 04:37:10,723 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-19 04:37:10,724 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-04-19 04:37:10,725 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-04-19 04:37:10,726 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-04-19 04:37:10,727 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-19 04:37:10,728 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-19 04:37:10,729 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-04-19 04:37:10,730 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-04-19 04:37:10,731 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-04-19 04:37:10,733 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,733 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,735 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,735 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,737 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,737 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,739 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,740 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,741 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,741 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,742 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,743 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,745 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,746 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,747 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,748 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,749 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-04-19 04:37:10,751 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-19 04:37:10,751 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-19 04:37:10,752 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-19 04:37:10,754 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-19 04:37:10,755 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-04-19 04:37:10,756 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,757 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,758 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,759 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,760 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,761 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,762 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,763 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,764 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,765 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-04-19 04:37:10,766 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-04-19 04:37:10,767 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-04-19 04:37:10,768 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-19 04:37:10,769 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-19 04:37:10,770 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-04-19 04:37:10,771 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,772 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,773 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,774 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,775 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,776 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:10,777 root INFO running egg_info 2024-04-19 04:37:10,784 root INFO writing biopython.egg-info/PKG-INFO 2024-04-19 04:37:10,787 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-04-19 04:37:10,788 root INFO writing requirements to biopython.egg-info/requires.txt 2024-04-19 04:37:10,789 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-04-19 04:37:10,845 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-04-19 04:37:10,908 root INFO reading manifest template 'MANIFEST.in' 2024-04-19 04:37:11,294 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-04-19 04:37:11,304 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-04-19 04:37:11,313 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-04-19 04:37:11,323 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-04-19 04:37:11,334 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-04-19 04:37:11,357 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-04-19 04:37:11,358 root INFO adding license file 'LICENSE' 2024-04-19 04:37:11,358 root INFO adding license file 'LICENSE.rst' 2024-04-19 04:37:11,498 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-04-19 04:37:11,622 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:11,623 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:11,624 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:11,625 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:11,627 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,628 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,629 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,630 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,631 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,631 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,632 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,633 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,634 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,635 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,636 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,637 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,637 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,638 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,639 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,640 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,641 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,642 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,643 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,644 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,645 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,645 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,646 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,647 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,648 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,649 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,650 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,651 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,652 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,653 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,654 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-19 04:37:11,655 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:11,657 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:11,658 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:11,659 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,660 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,661 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,662 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,663 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,664 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,665 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,666 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,667 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,668 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,669 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,670 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,671 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,672 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,673 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,674 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,675 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,676 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,677 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,678 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,679 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,680 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,681 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,682 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,683 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,684 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,686 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,687 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,688 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,690 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,691 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,692 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,693 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,696 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,697 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,699 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,700 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,702 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,703 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,704 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,705 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,706 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,708 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,709 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,710 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,711 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,712 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,713 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,714 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,715 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,717 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,718 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,719 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,720 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,721 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,722 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,723 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,724 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,725 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,727 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,727 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,728 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,729 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,730 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,731 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,732 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,733 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,734 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,735 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,736 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,737 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,738 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,739 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,740 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,740 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,741 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,742 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,744 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,744 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,746 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,746 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,747 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,748 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,749 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,750 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,751 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,752 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,753 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,754 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,755 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,756 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,757 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,758 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,759 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,760 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,760 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,762 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,763 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,764 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,764 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,765 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,766 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,767 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,768 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,769 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,770 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,771 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,772 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,773 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,773 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> 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root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,796 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,797 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,798 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,799 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,800 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,801 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,802 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,832 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,833 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,834 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,835 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,836 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,837 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,838 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 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2024-04-19 04:37:11,886 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,887 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,888 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,889 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,890 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,891 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,893 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,894 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,895 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,896 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,897 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,898 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,899 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,901 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,902 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,903 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,904 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,905 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,906 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,908 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,909 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,910 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,910 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,911 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,912 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,913 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,914 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,915 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,916 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,917 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,918 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,919 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,920 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,921 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,922 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,923 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,924 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,925 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,926 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,927 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,928 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,929 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,930 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,932 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,933 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,934 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,935 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,935 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,936 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,937 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,938 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,939 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,940 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,941 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,942 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,943 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,943 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,944 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,945 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,947 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,948 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,949 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,950 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,951 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-04-19 04:37:11,952 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-04-19 04:37:11,952 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-04-19 04:37:11,953 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:11,954 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:11,955 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:11,956 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:37:11,957 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:37:11,959 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-04-19 04:37:11,987 root INFO running build_ext 2024-04-19 04:37:11,995 root INFO building 'Bio.Align._codonaligner' extension 2024-04-19 04:37:11,996 root INFO creating build/temp.linux-riscv64-cpython-312 2024-04-19 04:37:11,996 root INFO creating build/temp.linux-riscv64-cpython-312/Bio 2024-04-19 04:37:11,997 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align 2024-04-19 04:37:11,997 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o 2024-04-19 04:37:14,486 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so 2024-04-19 04:37:14,534 root INFO building 'Bio.Align._pairwisealigner' extension 2024-04-19 04:37:14,534 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-19 04:37:43,269 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so 2024-04-19 04:37:43,485 root INFO building 'Bio.cpairwise2' extension 2024-04-19 04:37:43,485 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-19 04:37:44,906 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so 2024-04-19 04:37:44,949 root INFO building 'Bio.Nexus.cnexus' extension 2024-04-19 04:37:44,950 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus 2024-04-19 04:37:44,950 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o 2024-04-19 04:37:45,522 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so 2024-04-19 04:37:45,560 root INFO building 'Bio.motifs._pwm' extension 2024-04-19 04:37:45,561 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs 2024-04-19 04:37:45,561 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o 2024-04-19 04:37:46,318 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so 2024-04-19 04:37:46,358 root INFO building 'Bio.Cluster._cluster' extension 2024-04-19 04:37:46,358 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster 2024-04-19 04:37:46,359 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o 2024-04-19 04:37:56,702 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o 2024-04-19 04:37:59,966 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so 2024-04-19 04:38:00,053 root INFO building 'Bio.PDB.kdtrees' extension 2024-04-19 04:38:00,054 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB 2024-04-19 04:38:00,054 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o 2024-04-19 04:38:02,010 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so 2024-04-19 04:38:02,058 root INFO building 'Bio.PDB.ccealign' extension 2024-04-19 04:38:02,059 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o 2024-04-19 04:38:03,713 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so 2024-04-19 04:38:03,755 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-04-19 04:38:03,756 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO 2024-04-19 04:38:03,756 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-04-19 04:38:04,628 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so 2024-04-19 04:38:04,687 wheel INFO installing to build/bdist.linux-riscv64/wheel 2024-04-19 04:38:04,687 root INFO running install 2024-04-19 04:38:04,731 root INFO running install_lib 2024-04-19 04:38:04,741 root INFO creating build/bdist.linux-riscv64 2024-04-19 04:38:04,741 root INFO creating build/bdist.linux-riscv64/wheel 2024-04-19 04:38:04,742 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,743 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,744 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,744 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,745 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,746 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,747 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-04-19 04:38:04,748 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,749 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,751 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,752 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,753 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,754 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,755 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,756 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-04-19 04:38:04,757 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-19 04:38:04,758 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-19 04:38:04,759 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-19 04:38:04,763 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-19 04:38:04,764 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-04-19 04:38:04,765 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-19 04:38:04,766 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-19 04:38:04,767 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-19 04:38:04,768 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-04-19 04:38:04,769 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-04-19 04:38:04,769 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-04-19 04:38:04,770 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,771 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,772 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,773 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-19 04:38:04,774 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-19 04:38:04,775 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-04-19 04:38:04,776 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,777 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,778 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-19 04:38:04,779 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-19 04:38:04,780 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-04-19 04:38:04,781 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,782 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,783 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,784 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,785 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,786 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,787 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,788 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,788 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-04-19 04:38:04,789 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,790 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-19 04:38:04,791 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-19 04:38:04,792 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-19 04:38:04,793 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-04-19 04:38:04,794 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,795 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,796 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,797 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,797 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,798 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-04-19 04:38:04,799 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,800 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-19 04:38:04,801 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-19 04:38:04,802 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-04-19 04:38:04,803 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,804 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,805 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,806 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,807 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,808 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,809 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,810 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-04-19 04:38:04,811 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,812 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,813 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-19 04:38:04,814 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-19 04:38:04,815 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-19 04:38:04,816 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,816 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,817 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,818 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,819 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,820 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-04-19 04:38:04,821 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-04-19 04:38:04,822 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,823 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,824 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,825 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,826 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,827 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,829 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,830 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,830 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,832 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,834 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,835 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,836 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,839 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,840 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,842 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,843 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-04-19 04:38:04,844 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-19 04:38:04,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-19 04:38:04,845 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-19 04:38:04,847 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-19 04:38:04,848 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-04-19 04:38:04,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,851 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,852 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-04-19 04:38:04,853 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-19 04:38:04,854 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-19 04:38:04,855 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-04-19 04:38:04,856 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application 2024-04-19 04:38:04,856 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Application 2024-04-19 04:38:04,857 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,859 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-19 04:38:04,859 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-19 04:38:04,860 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-19 04:38:04,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-19 04:38:04,862 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-04-19 04:38:04,863 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-19 04:38:04,864 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-19 04:38:04,865 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-19 04:38:04,866 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-19 04:38:04,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-04-19 04:38:04,867 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,868 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,869 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,870 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,871 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,873 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,874 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,875 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,876 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,877 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,878 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,879 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,880 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,881 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,882 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,883 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,884 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,885 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,886 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,887 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,889 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,890 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,891 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,892 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,893 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-04-19 04:38:04,894 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-04-19 04:38:04,895 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-19 04:38:04,895 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-19 04:38:04,896 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-19 04:38:04,897 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-04-19 04:38:04,898 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-04-19 04:38:04,899 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,900 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,901 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,902 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,903 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,903 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-04-19 04:38:04,904 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,906 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-19 04:38:04,906 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-19 04:38:04,907 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-19 04:38:04,908 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-04-19 04:38:04,910 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,911 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,912 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2024-04-19 04:38:04,912 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Compass 2024-04-19 04:38:04,913 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2024-04-19 04:38:04,914 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Medline 2024-04-19 04:38:04,915 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-19 04:38:04,915 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-19 04:38:04,916 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-19 04:38:04,917 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-04-19 04:38:04,918 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-19 04:38:04,919 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-19 04:38:04,920 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-04-19 04:38:04,921 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,921 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,922 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,923 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,924 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,924 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,925 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-04-19 04:38:04,926 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,928 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,928 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-19 04:38:04,929 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-19 04:38:04,930 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-04-19 04:38:04,931 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,932 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,932 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,933 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,934 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,935 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,936 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,938 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,938 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-04-19 04:38:04,940 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-04-19 04:38:04,940 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-04-19 04:38:04,941 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,942 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,943 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,944 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,945 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,946 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,947 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,948 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-04-19 04:38:04,949 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:04,950 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,950 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,951 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,952 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,953 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,954 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,955 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,956 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-04-19 04:38:04,957 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,958 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,959 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,960 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,961 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,962 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,963 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,964 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,966 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,970 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,972 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,973 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,974 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,975 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,975 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,977 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,978 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,979 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,979 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,980 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,981 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,982 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,983 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,984 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-04-19 04:38:04,986 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,987 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:04,988 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-04-19 04:38:04,989 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,989 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,990 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,991 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,992 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,993 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,993 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,994 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,995 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,996 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,996 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,997 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,998 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,999 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:04,999 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,000 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,001 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,002 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,003 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,005 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,006 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,007 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,007 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,008 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,009 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,010 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,011 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,012 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-04-19 04:38:05,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-04-19 04:38:05,015 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,016 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,018 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,019 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,020 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,021 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,022 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,024 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,025 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,026 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,027 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,028 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-04-19 04:38:05,031 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-19 04:38:05,031 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-19 04:38:05,032 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-19 04:38:05,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-19 04:38:05,035 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-04-19 04:38:05,036 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-04-19 04:38:05,037 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,037 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,038 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,040 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,040 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,042 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-04-19 04:38:05,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-04-19 04:38:05,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,045 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-04-19 04:38:05,045 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-04-19 04:38:05,046 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-19 04:38:05,047 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-19 04:38:05,048 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-19 04:38:05,048 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-19 04:38:05,050 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-19 04:38:05,051 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-19 04:38:05,052 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-04-19 04:38:05,053 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-19 04:38:05,053 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-04-19 04:38:05,055 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-19 04:38:05,055 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-04-19 04:38:05,056 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-04-19 04:38:05,057 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-19 04:38:05,057 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-19 04:38:05,059 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-19 04:38:05,059 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-04-19 04:38:05,060 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-04-19 04:38:05,061 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-04-19 04:38:05,062 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-04-19 04:38:05,063 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-04-19 04:38:05,064 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-04-19 04:38:05,064 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-04-19 04:38:05,065 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-19 04:38:05,066 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-04-19 04:38:05,067 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,068 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,070 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,070 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,072 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,072 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,073 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-19 04:38:05,074 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-19 04:38:05,075 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-19 04:38:05,076 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-04-19 04:38:05,077 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,078 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,079 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,079 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,080 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,081 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,082 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,083 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,084 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,085 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,086 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,087 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,088 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,089 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,090 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,092 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,093 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,094 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,095 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,096 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,097 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,098 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,099 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,100 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,101 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,102 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,103 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,104 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,105 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,106 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,107 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,108 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,109 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,110 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,111 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,111 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,112 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,113 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,114 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-04-19 04:38:05,116 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-19 04:38:05,117 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-19 04:38:05,119 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-04-19 04:38:05,120 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-19 04:38:05,121 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-04-19 04:38:05,121 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-04-19 04:38:05,122 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-19 04:38:05,125 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,126 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,127 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,128 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,129 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,130 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,131 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,132 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,132 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,133 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,134 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,135 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,136 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,137 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,138 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,139 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,140 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,141 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,142 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,143 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,143 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,144 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,145 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,146 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,147 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,148 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,150 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,151 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,151 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,153 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,154 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,155 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,156 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,157 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,158 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,159 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,160 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,161 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,162 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,163 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,164 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,165 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,166 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,167 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,168 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,169 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,170 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,171 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,172 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,173 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,174 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,175 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,181 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,182 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,183 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,184 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,185 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,186 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,187 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,188 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,190 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,191 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,192 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,193 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,195 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,195 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,197 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,198 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,199 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,200 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,201 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,202 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,203 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,205 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,222 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,224 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,225 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,229 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,238 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,244 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,247 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,250 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,251 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,253 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,256 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,257 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,261 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,263 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,264 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,267 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,268 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,269 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,270 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,273 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,275 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,278 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,279 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,281 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,285 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,288 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,289 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,290 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,293 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,294 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,297 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,298 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,298 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,302 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,303 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,305 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,307 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,308 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,309 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,312 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,313 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,314 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,315 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,316 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,318 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,319 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,320 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,322 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,323 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,325 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,326 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,326 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,328 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,329 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,330 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,331 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,333 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,334 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,336 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,337 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,340 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,347 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,347 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,348 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,349 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,350 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,351 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,352 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,353 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,354 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,355 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,356 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,357 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,359 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,361 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,363 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,363 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,370 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,371 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,372 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,374 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,375 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,376 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,377 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,378 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,380 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,381 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,381 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,388 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,389 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,390 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,391 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,392 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,394 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,396 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,397 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,398 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,399 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,400 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,402 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,402 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,403 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,404 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,405 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,406 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,407 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,408 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,409 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-04-19 04:38:05,410 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-04-19 04:38:05,411 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,412 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,413 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,415 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,416 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,419 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,421 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-04-19 04:38:05,422 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,423 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,424 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/Bio 2024-04-19 04:38:05,425 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-04-19 04:38:05,426 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-04-19 04:38:05,427 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,428 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,428 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,430 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,430 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,432 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-04-19 04:38:05,434 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,435 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,438 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,439 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,442 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,443 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,444 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,445 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,446 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-04-19 04:38:05,447 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,448 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,448 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,449 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,451 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,453 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,455 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,456 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,457 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-04-19 04:38:05,459 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-04-19 04:38:05,459 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-04-19 04:38:05,461 root INFO running install_egg_info 2024-04-19 04:38:05,472 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/biopython-1.82-py3.12.egg-info 2024-04-19 04:38:05,477 root INFO running install_scripts 2024-04-19 04:38:05,495 wheel INFO creating build/bdist.linux-riscv64/wheel/biopython-1.82.dist-info/WHEEL 2024-04-19 04:38:05,497 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-dbwuyfdd/biopython-1.82-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2024-04-19 04:38:05,499 wheel INFO adding 'Bio/File.py' 2024-04-19 04:38:05,501 wheel INFO adding 'Bio/LogisticRegression.py' 2024-04-19 04:38:05,502 wheel INFO adding 'Bio/MarkovModel.py' 2024-04-19 04:38:05,504 wheel INFO adding 'Bio/MaxEntropy.py' 2024-04-19 04:38:05,505 wheel INFO adding 'Bio/NaiveBayes.py' 2024-04-19 04:38:05,507 wheel INFO adding 'Bio/Seq.py' 2024-04-19 04:38:05,511 wheel INFO adding 'Bio/SeqFeature.py' 2024-04-19 04:38:05,514 wheel INFO adding 'Bio/SeqRecord.py' 2024-04-19 04:38:05,516 wheel INFO adding 'Bio/__init__.py' 2024-04-19 04:38:05,517 wheel INFO adding 'Bio/_utils.py' 2024-04-19 04:38:05,518 wheel INFO adding 'Bio/bgzf.py' 2024-04-19 04:38:05,521 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so' 2024-04-19 04:38:05,523 wheel INFO adding 'Bio/cpairwise2module.c' 2024-04-19 04:38:05,524 wheel INFO adding 'Bio/kNN.py' 2024-04-19 04:38:05,525 wheel INFO adding 'Bio/pairwise2.py' 2024-04-19 04:38:05,528 wheel INFO adding 'Bio/py.typed' 2024-04-19 04:38:05,530 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-04-19 04:38:05,531 wheel INFO adding 'Bio/Affy/__init__.py' 2024-04-19 04:38:05,533 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-04-19 04:38:05,536 wheel INFO adding 'Bio/Align/__init__.py' 2024-04-19 04:38:05,540 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-04-19 04:38:05,543 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so' 2024-04-19 04:38:05,547 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-04-19 04:38:05,555 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so' 2024-04-19 04:38:05,565 wheel INFO adding 'Bio/Align/a2m.py' 2024-04-19 04:38:05,566 wheel INFO adding 'Bio/Align/analysis.py' 2024-04-19 04:38:05,568 wheel INFO adding 'Bio/Align/bed.py' 2024-04-19 04:38:05,570 wheel INFO adding 'Bio/Align/bigbed.py' 2024-04-19 04:38:05,573 wheel INFO adding 'Bio/Align/bigmaf.py' 2024-04-19 04:38:05,574 wheel INFO adding 'Bio/Align/bigpsl.py' 2024-04-19 04:38:05,576 wheel INFO adding 'Bio/Align/chain.py' 2024-04-19 04:38:05,577 wheel INFO adding 'Bio/Align/clustal.py' 2024-04-19 04:38:05,579 wheel INFO adding 'Bio/Align/emboss.py' 2024-04-19 04:38:05,580 wheel INFO adding 'Bio/Align/exonerate.py' 2024-04-19 04:38:05,582 wheel INFO adding 'Bio/Align/fasta.py' 2024-04-19 04:38:05,583 wheel INFO adding 'Bio/Align/hhr.py' 2024-04-19 04:38:05,584 wheel INFO adding 'Bio/Align/interfaces.py' 2024-04-19 04:38:05,586 wheel INFO adding 'Bio/Align/maf.py' 2024-04-19 04:38:05,587 wheel INFO adding 'Bio/Align/mauve.py' 2024-04-19 04:38:05,588 wheel INFO adding 'Bio/Align/msf.py' 2024-04-19 04:38:05,590 wheel INFO adding 'Bio/Align/nexus.py' 2024-04-19 04:38:05,591 wheel INFO adding 'Bio/Align/phylip.py' 2024-04-19 04:38:05,592 wheel INFO adding 'Bio/Align/psl.py' 2024-04-19 04:38:05,594 wheel INFO adding 'Bio/Align/sam.py' 2024-04-19 04:38:05,596 wheel INFO adding 'Bio/Align/stockholm.py' 2024-04-19 04:38:05,598 wheel INFO adding 'Bio/Align/tabular.py' 2024-04-19 04:38:05,599 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-04-19 04:38:05,601 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-04-19 04:38:05,602 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-04-19 04:38:05,604 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-04-19 04:38:05,605 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-04-19 04:38:05,607 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-04-19 04:38:05,609 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-04-19 04:38:05,610 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-04-19 04:38:05,611 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-04-19 04:38:05,612 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2024-04-19 04:38:05,613 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2024-04-19 04:38:05,615 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2024-04-19 04:38:05,616 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2024-04-19 04:38:05,616 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2024-04-19 04:38:05,617 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2024-04-19 04:38:05,618 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2024-04-19 04:38:05,619 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2024-04-19 04:38:05,620 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2024-04-19 04:38:05,621 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 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biopython-1.82-cp312-cp312-linux_riscv64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 7.3 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r1.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 12.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r1.apk >>> py3-biopython: Build complete at Fri, 19 Apr 2024 04:38:19 +0000 elapsed time 0h 1m 23s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/30) Purging .makedepends-py3-biopython (20240419.043701) (2/30) Purging py3-gpep517-pyc (15-r2) (3/30) Purging py3-gpep517 (15-r2) (4/30) Purging py3-installer-pyc (0.7.0-r2) (5/30) Purging py3-installer (0.7.0-r2) (6/30) Purging py3-setuptools-pyc (69.5.1-r0) (7/30) Purging py3-setuptools (69.5.1-r0) (8/30) Purging py3-wheel-pyc (0.42.0-r1) (9/30) Purging py3-wheel (0.42.0-r1) (10/30) Purging py3-packaging-pyc (24.0-r1) (11/30) Purging py3-packaging (24.0-r1) (12/30) Purging py3-parsing-pyc (3.1.2-r1) (13/30) Purging py3-parsing (3.1.2-r1) (14/30) Purging py3-numpy-dev (1.25.2-r1) (15/30) Purging py3-numpy-pyc (1.25.2-r1) (16/30) Purging py3-numpy (1.25.2-r1) (17/30) Purging openblas (0.3.27-r0) (18/30) Purging python3-dev (3.12.3-r1) (19/30) Purging python3-pyc (3.12.3-r1) (20/30) Purging python3-pycache-pyc0 (3.12.3-r1) (21/30) Purging pyc (3.12.3-r1) (22/30) Purging python3 (3.12.3-r1) (23/30) Purging gdbm (1.23-r1) (24/30) Purging libbz2 (1.0.8-r6) (25/30) Purging libffi (3.4.6-r0) (26/30) Purging libpanelw (6.4_p20240330-r0) (27/30) Purging mpdecimal (4.0.0-r0) (28/30) Purging readline (8.2.10-r0) (29/30) Purging sqlite-libs (3.45.3-r0) (30/30) Purging xz-libs (5.6.1-r3) Executing busybox-1.36.1-r25.trigger OK: 227 MiB in 102 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...