>>> py3-biopython: Building community/py3-biopython 1.84-r0 (using abuild 3.14.1-r3) started Mon, 25 Nov 2024 00:08:17 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/29) Installing openblas (0.3.28-r0) (2/29) Installing libbz2 (1.0.8-r6) (3/29) Installing libffi (3.4.6-r0) (4/29) Installing gdbm (1.24-r0) (5/29) Installing xz-libs (5.6.3-r0) (6/29) Installing mpdecimal (4.0.0-r0) (7/29) Installing libpanelw (6.5_p20241006-r3) (8/29) Installing sqlite-libs (3.47.0-r0) (9/29) Installing python3 (3.12.7-r1) (10/29) Installing python3-pycache-pyc0 (3.12.7-r1) (11/29) Installing pyc (3.12.7-r1) (12/29) Installing py3-numpy-pyc (2.1.3-r0) (13/29) Installing python3-pyc (3.12.7-r1) (14/29) Installing py3-numpy (2.1.3-r0) (15/29) Installing py3-installer (0.7.0-r2) (16/29) Installing py3-installer-pyc (0.7.0-r2) (17/29) Installing py3-gpep517 (16-r0) (18/29) Installing py3-gpep517-pyc (16-r0) (19/29) Installing py3-parsing (3.1.4-r0) (20/29) Installing py3-parsing-pyc (3.1.4-r0) (21/29) Installing py3-packaging (24.2-r0) (22/29) Installing py3-packaging-pyc (24.2-r0) (23/29) Installing py3-setuptools (70.3.0-r0) (24/29) Installing py3-setuptools-pyc (70.3.0-r0) (25/29) Installing py3-wheel (0.43.0-r0) (26/29) Installing py3-wheel-pyc (0.43.0-r0) (27/29) Installing py3-numpy-dev (2.1.3-r0) (28/29) Installing python3-dev (3.12.7-r1) (29/29) Installing .makedepends-py3-biopython (20241125.000821) Executing busybox-1.37.0-r8.trigger OK: 625 MiB in 130 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.84.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.84.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 20 24.5M 20 5224k 0 0 14.6M 0 0:00:01 --:--:-- 0:00:01 14.6M 100 24.5M 100 24.5M 0 0 23.6M 0 0:00:01 0:00:01 --:--:-- 28.2M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.84.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.84.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.84.tar.gz... 2024-11-25 00:08:30,718 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-11-25 00:08:30,778 root INFO running bdist_wheel 2024-11-25 00:08:30,855 root INFO running build 2024-11-25 00:08:30,856 root INFO running build_py 2024-11-25 00:08:30,867 root INFO creating build 2024-11-25 00:08:30,868 root INFO creating build/lib.linux-riscv64-cpython-312 2024-11-25 00:08:30,868 root INFO creating build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,869 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,871 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,873 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,875 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,876 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,877 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,878 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,880 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,881 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,883 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,884 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,886 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,888 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:30,890 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-25 00:08:30,891 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-25 00:08:30,892 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-25 00:08:30,895 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,895 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,897 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,898 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,899 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,901 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,902 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,903 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,904 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,906 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,907 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,908 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,909 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,910 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,912 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,913 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,914 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,916 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,917 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,918 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,920 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,921 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,922 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,923 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,924 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:30,926 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,927 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,928 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,929 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,930 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,931 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,932 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,933 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,934 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,936 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,937 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-25 00:08:30,938 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-11-25 00:08:30,939 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-11-25 00:08:30,941 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,942 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,943 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,944 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,945 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,946 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,947 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,948 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,949 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,951 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,952 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,953 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-25 00:08:30,954 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-11-25 00:08:30,955 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-11-25 00:08:30,956 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application 2024-11-25 00:08:30,957 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application 2024-11-25 00:08:30,959 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,959 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,961 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,962 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,963 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,964 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,966 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-25 00:08:30,967 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-11-25 00:08:30,968 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-11-25 00:08:30,970 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-11-25 00:08:30,970 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-11-25 00:08:30,972 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-25 00:08:30,973 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-25 00:08:30,974 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-25 00:08:30,975 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-25 00:08:30,977 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-11-25 00:08:30,977 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-11-25 00:08:30,979 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-25 00:08:30,980 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-25 00:08:30,981 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-25 00:08:30,982 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-25 00:08:30,983 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-25 00:08:30,985 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-25 00:08:30,985 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-25 00:08:30,987 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-25 00:08:30,988 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-25 00:08:30,989 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-25 00:08:30,990 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-25 00:08:30,991 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-25 00:08:30,992 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-25 00:08:30,994 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:30,994 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:30,995 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:30,996 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:30,998 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:30,999 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:31,000 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-25 00:08:31,001 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-25 00:08:31,002 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-25 00:08:31,003 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-25 00:08:31,005 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-25 00:08:31,006 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-25 00:08:31,007 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-25 00:08:31,008 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-25 00:08:31,009 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-25 00:08:31,011 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,011 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,013 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,014 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,015 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,016 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,017 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,018 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-25 00:08:31,020 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,021 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,022 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,023 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,024 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,026 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,027 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,028 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,029 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,030 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,032 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,033 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,034 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-25 00:08:31,036 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,036 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,037 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,038 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,040 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,041 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-25 00:08:31,042 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-25 00:08:31,043 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-25 00:08:31,044 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-25 00:08:31,045 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-11-25 00:08:31,046 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-11-25 00:08:31,047 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-11-25 00:08:31,048 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-11-25 00:08:31,050 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-11-25 00:08:31,050 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-11-25 00:08:31,051 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-11-25 00:08:31,052 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-11-25 00:08:31,054 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,054 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-25 00:08:31,055 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-25 00:08:31,056 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-25 00:08:31,057 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-25 00:08:31,058 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-25 00:08:31,059 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-25 00:08:31,060 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-25 00:08:31,061 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-25 00:08:31,063 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-11-25 00:08:31,063 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-11-25 00:08:31,065 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,066 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,067 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,068 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,069 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,070 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,071 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,073 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,074 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,075 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,076 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,077 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:31,078 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-25 00:08:31,079 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-25 00:08:31,080 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-25 00:08:31,081 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-25 00:08:31,082 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-25 00:08:31,083 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-25 00:08:31,085 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,086 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,087 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,088 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,089 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,090 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:31,092 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-25 00:08:31,093 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-25 00:08:31,094 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-25 00:08:31,095 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-25 00:08:31,096 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-11-25 00:08:31,097 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-11-25 00:08:31,098 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-25 00:08:31,099 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-25 00:08:31,100 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-25 00:08:31,101 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-25 00:08:31,104 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,105 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,106 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,107 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,108 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,109 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,110 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,111 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,113 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,114 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,115 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,116 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,117 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,118 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,119 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,121 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,122 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,123 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,124 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,125 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,126 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,127 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,128 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,129 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,131 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,132 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,133 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,134 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,135 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,137 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,138 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,139 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,140 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,141 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,142 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,143 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,145 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,146 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,147 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,148 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,149 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:31,152 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-25 00:08:31,152 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-25 00:08:31,154 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-25 00:08:31,155 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-25 00:08:31,157 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-11-25 00:08:31,157 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-11-25 00:08:31,159 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,159 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,160 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,162 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,163 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,164 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-25 00:08:31,166 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-25 00:08:31,166 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-25 00:08:31,168 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-25 00:08:31,172 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-25 00:08:31,173 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-25 00:08:31,175 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,176 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,177 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,178 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,179 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,180 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,181 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,182 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-25 00:08:31,184 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,185 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,186 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,187 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,188 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,190 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-25 00:08:31,191 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,192 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,193 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,194 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,195 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,197 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-25 00:08:31,198 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-25 00:08:31,199 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-25 00:08:31,200 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-25 00:08:31,201 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-25 00:08:31,203 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-25 00:08:31,204 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-25 00:08:31,205 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-25 00:08:31,206 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,207 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,208 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,209 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,211 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,212 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,213 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-25 00:08:31,214 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,215 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,216 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,218 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,219 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,220 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-25 00:08:31,221 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-25 00:08:31,222 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-25 00:08:31,223 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-25 00:08:31,225 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,226 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,227 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,228 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,230 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,231 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,232 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,233 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,234 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,235 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,237 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,238 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,239 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,240 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,241 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,243 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,244 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,245 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,246 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,248 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,249 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,250 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,251 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,252 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:31,254 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,255 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,256 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,257 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,258 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,259 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,261 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,264 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-25 00:08:31,266 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-25 00:08:31,266 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-25 00:08:31,267 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-25 00:08:31,268 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-25 00:08:31,270 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-25 00:08:31,270 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-25 00:08:31,272 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-25 00:08:31,273 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-25 00:08:31,274 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-25 00:08:31,275 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-11-25 00:08:31,276 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-11-25 00:08:31,277 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-25 00:08:31,278 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-25 00:08:31,279 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-25 00:08:31,281 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-11-25 00:08:31,281 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-11-25 00:08:31,283 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,284 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,285 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,286 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,287 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,288 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,290 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,291 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,292 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,293 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,294 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,295 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,296 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,298 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,299 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,300 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,302 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-25 00:08:31,303 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-25 00:08:31,304 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-25 00:08:31,305 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-25 00:08:31,307 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-25 00:08:31,308 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-25 00:08:31,310 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,310 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,311 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,312 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,313 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,315 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,316 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,317 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,318 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,319 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-25 00:08:31,320 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-11-25 00:08:31,321 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-11-25 00:08:31,322 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-25 00:08:31,323 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-25 00:08:31,324 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-25 00:08:31,326 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,326 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,327 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,329 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,330 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,331 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:31,332 root INFO running egg_info 2024-11-25 00:08:31,339 root INFO writing biopython.egg-info/PKG-INFO 2024-11-25 00:08:31,341 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-11-25 00:08:31,343 root INFO writing requirements to biopython.egg-info/requires.txt 2024-11-25 00:08:31,344 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-11-25 00:08:31,397 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-11-25 00:08:31,460 root INFO reading manifest template 'MANIFEST.in' 2024-11-25 00:08:31,799 root WARNING warning: no previously-included files found matching 'Doc/_build/' 2024-11-25 00:08:31,817 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-11-25 00:08:31,826 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-11-25 00:08:31,835 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-11-25 00:08:31,845 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-11-25 00:08:31,855 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-11-25 00:08:31,877 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-11-25 00:08:31,878 root INFO adding license file 'LICENSE' 2024-11-25 00:08:31,878 root INFO adding license file 'LICENSE.rst' 2024-11-25 00:08:32,007 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-11-25 00:08:32,120 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:32,122 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:32,123 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:32,124 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:32,126 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:32,129 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,130 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,131 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,132 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,133 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,134 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,137 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,138 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,139 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,140 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,141 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,142 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,143 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,144 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,145 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,146 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,147 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,148 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,149 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,150 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,151 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,153 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,154 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,155 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,156 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,157 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,158 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,159 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,160 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,161 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-25 00:08:32,162 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,351 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,353 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,354 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,355 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,356 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,357 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,359 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,360 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,433 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,434 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,435 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,436 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,437 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,438 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,439 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,441 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,442 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,443 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,445 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,446 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,447 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,448 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,450 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,451 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,452 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,454 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,455 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,456 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,458 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,459 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,460 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,461 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,462 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,464 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,465 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,466 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,467 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,468 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,469 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,470 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,471 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,473 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,474 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,475 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,476 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,477 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,479 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,480 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,481 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,482 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,483 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,484 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,486 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,487 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,488 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,489 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,490 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,491 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,493 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,494 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,495 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,496 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,497 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,498 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,499 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,501 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,502 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,503 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,504 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,505 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,507 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,508 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,509 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,510 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-25 00:08:32,511 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-25 00:08:32,512 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-25 00:08:32,513 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-25 00:08:32,515 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-25 00:08:32,516 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:08:32,517 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:08:32,518 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:32,519 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:32,520 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:08:32,522 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:08:32,523 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-25 00:08:32,550 root INFO running build_ext 2024-11-25 00:08:32,556 root INFO building 'Bio.Align._codonaligner' extension 2024-11-25 00:08:32,557 root INFO creating build/temp.linux-riscv64-cpython-312 2024-11-25 00:08:32,557 root INFO creating build/temp.linux-riscv64-cpython-312/Bio 2024-11-25 00:08:32,558 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align 2024-11-25 00:08:32,558 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o 2024-11-25 00:08:35,333 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so 2024-11-25 00:08:35,386 root INFO building 'Bio.Align._pairwisealigner' extension 2024-11-25 00:08:35,387 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-25 00:09:10,736 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:10,956 root INFO building 'Bio.Align._aligncore' extension 2024-11-25 00:09:10,956 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o 2024-11-25 00:09:12,162 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:12,204 root INFO building 'Bio.cpairwise2' extension 2024-11-25 00:09:12,205 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-25 00:09:13,804 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:13,849 root INFO building 'Bio.Nexus.cnexus' extension 2024-11-25 00:09:13,850 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus 2024-11-25 00:09:13,850 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o 2024-11-25 00:09:14,522 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:14,562 root INFO building 'Bio.motifs._pwm' extension 2024-11-25 00:09:14,562 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs 2024-11-25 00:09:14,563 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o 2024-11-25 00:09:15,413 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:15,455 root INFO building 'Bio.Cluster._cluster' extension 2024-11-25 00:09:15,455 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster 2024-11-25 00:09:15,456 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o 2024-11-25 00:09:28,757 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o 2024-11-25 00:09:32,333 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:32,422 root INFO building 'Bio.PDB.ccealign' extension 2024-11-25 00:09:32,423 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB 2024-11-25 00:09:32,423 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o 2024-11-25 00:09:33,941 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:33,985 root INFO building 'Bio.PDB.kdtrees' extension 2024-11-25 00:09:33,985 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o 2024-11-25 00:09:36,226 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:36,275 root INFO building 'Bio.PDB._bcif_helper' extension 2024-11-25 00:09:36,276 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o 2024-11-25 00:09:37,075 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:37,116 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-11-25 00:09:37,116 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-25 00:09:37,117 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-11-25 00:09:38,077 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so 2024-11-25 00:09:38,140 root INFO installing to build/bdist.linux-riscv64/wheel 2024-11-25 00:09:38,140 root INFO running install 2024-11-25 00:09:38,184 root INFO running install_lib 2024-11-25 00:09:38,194 root INFO creating build/bdist.linux-riscv64 2024-11-25 00:09:38,195 root INFO creating build/bdist.linux-riscv64/wheel 2024-11-25 00:09:38,195 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,196 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,197 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,198 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,199 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,200 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,202 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-25 00:09:38,203 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,205 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,206 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,207 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,208 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,210 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,211 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-25 00:09:38,212 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-25 00:09:38,213 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-25 00:09:38,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-25 00:09:38,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-25 00:09:38,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-25 00:09:38,221 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-25 00:09:38,222 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-25 00:09:38,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-25 00:09:38,224 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-25 00:09:38,226 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-11-25 00:09:38,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-11-25 00:09:38,227 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,231 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-25 00:09:38,231 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-25 00:09:38,233 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-25 00:09:38,234 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,235 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,237 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-25 00:09:38,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-25 00:09:38,238 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-25 00:09:38,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,244 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,247 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-25 00:09:38,250 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,251 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-25 00:09:38,251 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-25 00:09:38,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-25 00:09:38,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-25 00:09:38,255 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,256 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,257 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,261 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-25 00:09:38,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,263 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-25 00:09:38,264 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-25 00:09:38,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-25 00:09:38,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,268 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,268 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,270 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,273 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-25 00:09:38,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,278 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-25 00:09:38,279 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-25 00:09:38,280 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-25 00:09:38,281 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-25 00:09:38,288 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-25 00:09:38,289 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,290 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,294 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,297 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,298 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,302 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,303 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,304 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,305 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,307 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,309 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,311 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,312 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,313 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,314 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-25 00:09:38,315 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-25 00:09:38,316 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-25 00:09:38,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-25 00:09:38,319 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-25 00:09:38,320 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-25 00:09:38,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,322 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,326 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-25 00:09:38,327 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-25 00:09:38,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-25 00:09:38,329 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-25 00:09:38,330 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application 2024-11-25 00:09:38,330 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Application 2024-11-25 00:09:38,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,333 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-25 00:09:38,334 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-25 00:09:38,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-25 00:09:38,337 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-25 00:09:38,338 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-25 00:09:38,339 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-25 00:09:38,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-25 00:09:38,341 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-25 00:09:38,342 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-25 00:09:38,343 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-25 00:09:38,344 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,345 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,346 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,347 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,349 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,350 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,351 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,352 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,354 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,355 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,356 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,357 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,358 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,361 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,362 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,363 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,365 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,366 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,367 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,369 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,370 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,371 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,374 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,375 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-25 00:09:38,376 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-11-25 00:09:38,377 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-25 00:09:38,378 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-25 00:09:38,379 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-25 00:09:38,380 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-25 00:09:38,381 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-11-25 00:09:38,382 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,383 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,385 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,386 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,387 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,388 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,390 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-25 00:09:38,391 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,393 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-25 00:09:38,394 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-25 00:09:38,395 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-25 00:09:38,396 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-25 00:09:38,397 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,398 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,399 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2024-11-25 00:09:38,400 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Compass 2024-11-25 00:09:38,401 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2024-11-25 00:09:38,402 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Medline 2024-11-25 00:09:38,403 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-25 00:09:38,404 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-25 00:09:38,405 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-25 00:09:38,406 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-25 00:09:38,407 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-25 00:09:38,408 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-25 00:09:38,409 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-25 00:09:38,410 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,411 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,412 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,413 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,414 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,415 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,416 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-25 00:09:38,418 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,419 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,420 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-25 00:09:38,421 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-25 00:09:38,422 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-25 00:09:38,423 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,424 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,425 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,426 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,427 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,428 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,429 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,432 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-25 00:09:38,434 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-11-25 00:09:38,434 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-11-25 00:09:38,435 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,438 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,441 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,443 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,444 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-25 00:09:38,445 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,446 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,447 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,448 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,449 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,450 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,451 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,453 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-25 00:09:38,455 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,455 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,457 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,459 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,462 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,463 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,465 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,469 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,471 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,472 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,474 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,476 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,477 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,479 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,481 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,482 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,483 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,486 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,487 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,489 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,490 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-25 00:09:38,492 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,493 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,494 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-11-25 00:09:38,495 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,496 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,497 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,498 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,499 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,500 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,501 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,502 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,503 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,504 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,505 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,506 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,507 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,508 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,509 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,510 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,511 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,512 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,514 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,515 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,516 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,518 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,519 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,520 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,521 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,522 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,523 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,525 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,526 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-25 00:09:38,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-11-25 00:09:38,529 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,531 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,533 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,534 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,535 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,537 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,538 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,539 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,542 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,543 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,545 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,546 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,547 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-25 00:09:38,548 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-25 00:09:38,549 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-25 00:09:38,550 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-25 00:09:38,552 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-25 00:09:38,554 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-25 00:09:38,555 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-11-25 00:09:38,556 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,556 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,557 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,559 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,560 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,561 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-25 00:09:38,562 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-11-25 00:09:38,564 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,565 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-11-25 00:09:38,566 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-11-25 00:09:38,567 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-25 00:09:38,567 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-25 00:09:38,569 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-25 00:09:38,569 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-25 00:09:38,571 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-25 00:09:38,572 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-25 00:09:38,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-25 00:09:38,574 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-25 00:09:38,575 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-25 00:09:38,577 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-25 00:09:38,577 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-11-25 00:09:38,578 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-11-25 00:09:38,579 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-25 00:09:38,580 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-25 00:09:38,581 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-25 00:09:38,582 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-25 00:09:38,583 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-11-25 00:09:38,584 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-11-25 00:09:38,585 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-11-25 00:09:38,586 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-11-25 00:09:38,587 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-11-25 00:09:38,588 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-11-25 00:09:38,589 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-25 00:09:38,590 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-25 00:09:38,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,592 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:38,594 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,595 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,596 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,597 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,598 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-25 00:09:38,599 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-25 00:09:38,600 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-25 00:09:38,601 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-25 00:09:38,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,604 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,605 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,606 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,607 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,609 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,611 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,613 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,615 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,618 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,619 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,621 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,624 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,625 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,627 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,628 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,629 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,630 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,632 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,633 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,634 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,638 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,639 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,640 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,641 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,643 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,644 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,645 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,647 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,648 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,650 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,653 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,655 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-25 00:09:38,657 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-25 00:09:38,658 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-25 00:09:38,659 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-25 00:09:38,660 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-25 00:09:38,661 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-25 00:09:38,662 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-25 00:09:38,663 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-25 00:09:38,664 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-25 00:09:38,665 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-25 00:09:38,667 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,668 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,671 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,672 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,673 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,676 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,677 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,678 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,679 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,681 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,682 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,684 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,685 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,686 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,687 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,689 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,690 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,691 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,694 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,695 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,696 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,698 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,699 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,700 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,702 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,703 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,704 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,705 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,707 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,709 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,710 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,826 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,827 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,830 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,832 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,833 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,834 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,839 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,840 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,843 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,845 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,846 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,847 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,850 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,851 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,852 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,853 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,855 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,857 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,858 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,859 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,860 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,863 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,865 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,866 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,868 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,869 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,870 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,872 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,873 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,874 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,875 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,877 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,878 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,879 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,880 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,881 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,882 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,883 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,885 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,886 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,887 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,888 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,889 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,890 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,891 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,893 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,894 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,895 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,896 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,898 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,899 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,900 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,901 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,902 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,904 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,905 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,906 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,907 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,908 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,910 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,911 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,912 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,913 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,914 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,916 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,917 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,918 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,920 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,921 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,922 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,923 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,924 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,925 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,926 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,928 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,929 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,930 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,931 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,933 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,934 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,935 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,936 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,937 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,939 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,940 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,941 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,942 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,943 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,945 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,946 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,947 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,948 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,949 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,951 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,952 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,954 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,955 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,957 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,958 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,959 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,960 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,961 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,962 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,963 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,965 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,966 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,967 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,968 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,969 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,970 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,972 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,973 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,974 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,975 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,976 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,978 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,979 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,980 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,981 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,982 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,984 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,985 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,986 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,987 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,988 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,989 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,991 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,992 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,993 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,995 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,996 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:38,997 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,000 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,001 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,002 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,005 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,006 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,008 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,009 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,010 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,012 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,014 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,015 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,016 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-25 00:09:39,017 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-25 00:09:39,019 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:39,020 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,021 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,023 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,026 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,030 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-25 00:09:39,031 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:39,033 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:39,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/Bio 2024-11-25 00:09:39,036 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-11-25 00:09:39,036 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-11-25 00:09:39,038 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,038 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,039 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,041 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,042 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,044 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,046 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-25 00:09:39,047 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,048 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,049 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,050 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,051 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,052 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,054 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,055 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,056 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,058 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,059 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,061 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,062 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-25 00:09:39,063 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,064 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,065 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,066 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,067 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,069 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,070 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,071 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,072 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,073 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,074 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,076 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-25 00:09:39,077 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-11-25 00:09:39,078 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-11-25 00:09:39,079 root INFO running install_egg_info 2024-11-25 00:09:39,089 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/biopython-1.84-py3.12.egg-info 2024-11-25 00:09:39,095 root INFO running install_scripts 2024-11-25 00:09:39,129 root INFO creating build/bdist.linux-riscv64/wheel/biopython-1.84.dist-info/WHEEL 2024-11-25 00:09:39,131 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.84/.dist/.tmp-u6ydmvad/biopython-1.84-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2024-11-25 00:09:39,133 wheel INFO adding 'Bio/File.py' 2024-11-25 00:09:39,135 wheel INFO adding 'Bio/LogisticRegression.py' 2024-11-25 00:09:39,136 wheel INFO adding 'Bio/MarkovModel.py' 2024-11-25 00:09:39,137 wheel INFO adding 'Bio/MaxEntropy.py' 2024-11-25 00:09:39,139 wheel INFO adding 'Bio/NaiveBayes.py' 2024-11-25 00:09:39,141 wheel INFO adding 'Bio/Seq.py' 2024-11-25 00:09:39,145 wheel INFO adding 'Bio/SeqFeature.py' 2024-11-25 00:09:39,148 wheel INFO adding 'Bio/SeqRecord.py' 2024-11-25 00:09:39,150 wheel INFO adding 'Bio/__init__.py' 2024-11-25 00:09:39,151 wheel INFO adding 'Bio/_utils.py' 2024-11-25 00:09:39,153 wheel INFO adding 'Bio/bgzf.py' 2024-11-25 00:09:39,155 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so' 2024-11-25 00:09:39,157 wheel INFO adding 'Bio/cpairwise2module.c' 2024-11-25 00:09:39,158 wheel INFO adding 'Bio/kNN.py' 2024-11-25 00:09:39,159 wheel INFO adding 'Bio/pairwise2.py' 2024-11-25 00:09:39,161 wheel INFO adding 'Bio/py.typed' 2024-11-25 00:09:39,164 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-11-25 00:09:39,165 wheel INFO adding 'Bio/Affy/__init__.py' 2024-11-25 00:09:39,167 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-11-25 00:09:39,170 wheel INFO adding 'Bio/Align/__init__.py' 2024-11-25 00:09:39,174 wheel INFO adding 'Bio/Align/_aligncore.c' 2024-11-25 00:09:39,176 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so' 2024-11-25 00:09:39,178 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-11-25 00:09:39,180 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so' 2024-11-25 00:09:39,184 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-11-25 00:09:39,193 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so' 2024-11-25 00:09:39,202 wheel INFO adding 'Bio/Align/a2m.py' 2024-11-25 00:09:39,203 wheel INFO adding 'Bio/Align/analysis.py' 2024-11-25 00:09:39,205 wheel INFO adding 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wheel INFO adding 'Bio/Align/psl.py' 2024-11-25 00:09:39,231 wheel INFO adding 'Bio/Align/sam.py' 2024-11-25 00:09:39,233 wheel INFO adding 'Bio/Align/stockholm.py' 2024-11-25 00:09:39,235 wheel INFO adding 'Bio/Align/tabular.py' 2024-11-25 00:09:39,236 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-11-25 00:09:39,238 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-11-25 00:09:39,239 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-11-25 00:09:39,241 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-11-25 00:09:39,242 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-11-25 00:09:39,243 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-11-25 00:09:39,245 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-11-25 00:09:39,247 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-11-25 00:09:39,247 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-11-25 00:09:39,249 wheel INFO adding 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'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> 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'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 6.4 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.84-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 11.0 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.84-r0.apk >>> py3-biopython: Build complete at Mon, 25 Nov 2024 00:09:53 +0000 elapsed time 0h 1m 36s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/29) Purging .makedepends-py3-biopython (20241125.000821) (2/29) Purging py3-numpy-pyc (2.1.3-r0) (3/29) Purging py3-numpy (2.1.3-r0) (4/29) Purging openblas (0.3.28-r0) (5/29) Purging py3-gpep517-pyc (16-r0) (6/29) Purging py3-gpep517 (16-r0) (7/29) Purging py3-installer-pyc (0.7.0-r2) (8/29) Purging py3-installer (0.7.0-r2) (9/29) Purging py3-setuptools-pyc (70.3.0-r0) (10/29) Purging py3-setuptools (70.3.0-r0) (11/29) Purging py3-wheel-pyc (0.43.0-r0) (12/29) Purging py3-wheel (0.43.0-r0) (13/29) Purging py3-packaging-pyc (24.2-r0) (14/29) Purging py3-packaging (24.2-r0) (15/29) Purging py3-parsing-pyc (3.1.4-r0) (16/29) Purging py3-parsing (3.1.4-r0) (17/29) Purging py3-numpy-dev (2.1.3-r0) (18/29) Purging python3-dev (3.12.7-r1) (19/29) Purging python3-pyc (3.12.7-r1) (20/29) Purging python3-pycache-pyc0 (3.12.7-r1) (21/29) Purging pyc (3.12.7-r1) (22/29) Purging python3 (3.12.7-r1) (23/29) Purging gdbm (1.24-r0) (24/29) Purging libbz2 (1.0.8-r6) (25/29) Purging libffi (3.4.6-r0) (26/29) Purging libpanelw (6.5_p20241006-r3) (27/29) Purging mpdecimal (4.0.0-r0) (28/29) Purging sqlite-libs (3.47.0-r0) (29/29) Purging xz-libs (5.6.3-r0) Executing busybox-1.37.0-r8.trigger OK: 339 MiB in 101 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...