>>> py3-biopython: Building community/py3-biopython 1.85-r0 (using abuild 3.15.0_rc3-r1) started Thu, 24 Apr 2025 08:34:44 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> WARNING: py3-biopython: No maintainer >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/28) Installing openblas (0.3.28-r0) (2/28) Installing libffi (3.4.8-r0) (3/28) Installing gdbm (1.24-r0) (4/28) Installing mpdecimal (4.0.0-r0) (5/28) Installing libpanelw (6.5_p20250412-r0) (6/28) Installing sqlite-libs (3.49.1-r0) (7/28) Installing python3 (3.12.10-r0) (8/28) Installing python3-pycache-pyc0 (3.12.10-r0) (9/28) Installing pyc (3.12.10-r0) (10/28) Installing py3-numpy-pyc (2.2.4-r0) (11/28) Installing python3-pyc (3.12.10-r0) (12/28) Installing py3-numpy (2.2.4-r0) (13/28) Installing py3-numpy-tests (2.2.4-r0) (14/28) Installing py3-installer (0.7.0-r2) (15/28) Installing py3-installer-pyc (0.7.0-r2) (16/28) Installing py3-gpep517 (16-r0) (17/28) Installing py3-gpep517-pyc (16-r0) (18/28) Installing py3-parsing (3.2.0-r0) (19/28) Installing py3-parsing-pyc (3.2.0-r0) (20/28) Installing py3-packaging (24.2-r0) (21/28) Installing py3-packaging-pyc (24.2-r0) (22/28) Installing py3-setuptools (77.0.3-r0) (23/28) Installing py3-setuptools-pyc (77.0.3-r0) (24/28) Installing py3-wheel (0.43.0-r0) (25/28) Installing py3-wheel-pyc (0.43.0-r0) (26/28) Installing py3-numpy-dev (2.2.4-r0) (27/28) Installing python3-dev (3.12.10-r0) (28/28) Installing .makedepends-py3-biopython (20250424.083448) Executing busybox-1.37.0-r16.trigger OK: 593 MiB in 138 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.85.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 18.9M 100 18.9M 0 0 22.9M 0 --:--:-- --:--:-- --:--:-- 22.9M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.85.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.85.tar.gz... 2025-04-24 08:34:57,180 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:760: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2025-04-24 08:34:57,308 root INFO running bdist_wheel 2025-04-24 08:34:57,390 root INFO running build 2025-04-24 08:34:57,390 root INFO running build_py 2025-04-24 08:34:57,410 root INFO creating build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,412 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,414 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,416 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,419 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,421 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,423 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,426 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,427 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,429 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,431 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,433 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,434 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,436 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:57,438 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy 2025-04-24 08:34:57,439 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2025-04-24 08:34:57,441 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2025-04-24 08:34:57,444 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,445 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,447 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,449 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,451 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,452 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,455 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,457 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,458 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,460 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,462 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,464 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,465 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,467 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,469 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,471 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,472 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,474 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,476 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,477 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,479 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,481 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,483 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,484 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,486 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:57,489 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,489 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,491 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,493 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,495 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,496 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,498 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,500 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,501 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,503 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,505 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2025-04-24 08:34:57,507 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2025-04-24 08:34:57,508 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2025-04-24 08:34:57,510 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,511 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,513 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,515 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,516 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,518 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,520 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,521 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,523 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,525 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,527 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,528 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2025-04-24 08:34:57,530 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2025-04-24 08:34:57,531 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2025-04-24 08:34:57,533 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application 2025-04-24 08:34:57,534 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application 2025-04-24 08:34:57,537 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,538 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,539 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,541 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,543 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,545 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,547 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2025-04-24 08:34:57,550 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS 2025-04-24 08:34:57,551 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS 2025-04-24 08:34:57,553 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster 2025-04-24 08:34:57,554 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2025-04-24 08:34:57,556 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign 2025-04-24 08:34:57,557 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2025-04-24 08:34:57,559 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2025-04-24 08:34:57,561 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2025-04-24 08:34:57,563 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass 2025-04-24 08:34:57,564 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass 2025-04-24 08:34:57,566 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data 2025-04-24 08:34:57,567 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2025-04-24 08:34:57,569 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2025-04-24 08:34:57,570 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2025-04-24 08:34:57,572 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2025-04-24 08:34:57,574 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss 2025-04-24 08:34:57,575 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2025-04-24 08:34:57,577 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2025-04-24 08:34:57,579 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2025-04-24 08:34:57,580 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2025-04-24 08:34:57,583 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez 2025-04-24 08:34:57,584 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2025-04-24 08:34:57,585 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2025-04-24 08:34:57,588 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,589 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,591 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,592 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,594 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,595 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,597 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2025-04-24 08:34:57,599 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank 2025-04-24 08:34:57,600 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2025-04-24 08:34:57,602 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2025-04-24 08:34:57,604 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2025-04-24 08:34:57,606 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2025-04-24 08:34:57,608 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo 2025-04-24 08:34:57,609 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2025-04-24 08:34:57,611 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2025-04-24 08:34:57,613 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,614 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,616 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,617 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,619 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,621 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,623 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,624 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2025-04-24 08:34:57,627 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,628 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,629 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,631 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,633 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,634 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,636 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,638 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,640 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,642 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,644 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,645 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,647 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 08:34:57,649 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,650 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,652 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,653 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,655 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,657 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2025-04-24 08:34:57,659 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG 2025-04-24 08:34:57,660 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2025-04-24 08:34:57,662 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2025-04-24 08:34:57,664 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2025-04-24 08:34:57,665 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2025-04-24 08:34:57,667 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2025-04-24 08:34:57,668 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2025-04-24 08:34:57,670 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2025-04-24 08:34:57,671 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2025-04-24 08:34:57,673 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2025-04-24 08:34:57,674 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2025-04-24 08:34:57,676 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2025-04-24 08:34:57,677 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2025-04-24 08:34:57,679 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2025-04-24 08:34:57,681 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2025-04-24 08:34:57,683 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2025-04-24 08:34:57,684 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2025-04-24 08:34:57,685 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2025-04-24 08:34:57,687 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2025-04-24 08:34:57,689 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline 2025-04-24 08:34:57,690 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline 2025-04-24 08:34:57,693 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,694 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,695 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,697 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,699 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,700 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,702 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,704 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,706 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,707 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,709 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,710 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:34:57,712 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2025-04-24 08:34:57,713 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2025-04-24 08:34:57,715 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2025-04-24 08:34:57,717 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2025-04-24 08:34:57,718 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2025-04-24 08:34:57,720 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2025-04-24 08:34:57,722 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,723 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,725 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,727 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,729 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,730 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:34:57,733 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR 2025-04-24 08:34:57,734 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2025-04-24 08:34:57,735 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2025-04-24 08:34:57,737 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2025-04-24 08:34:57,739 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway 2025-04-24 08:34:57,740 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway 2025-04-24 08:34:57,742 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2025-04-24 08:34:57,743 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2025-04-24 08:34:57,744 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2025-04-24 08:34:57,746 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2025-04-24 08:34:57,751 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,752 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,754 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,755 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,757 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,759 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,760 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,762 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,764 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,765 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,767 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,769 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,770 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,772 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,774 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,775 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,777 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,779 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,781 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,782 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,784 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,786 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,788 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,789 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,791 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,793 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,794 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,796 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,798 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,799 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,801 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,803 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,805 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,807 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,808 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,810 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,812 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,814 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,816 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,818 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,820 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:34:57,822 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype 2025-04-24 08:34:57,823 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2025-04-24 08:34:57,825 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2025-04-24 08:34:57,826 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2025-04-24 08:34:57,828 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen 2025-04-24 08:34:57,829 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen 2025-04-24 08:34:57,832 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,832 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,834 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,836 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,838 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,840 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2025-04-24 08:34:57,842 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction 2025-04-24 08:34:57,843 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2025-04-24 08:34:57,845 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2025-04-24 08:34:57,847 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2025-04-24 08:34:57,852 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2025-04-24 08:34:57,855 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,856 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,857 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,859 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,860 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,862 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,864 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,865 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2025-04-24 08:34:57,868 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,869 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,871 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,873 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,874 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,876 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2025-04-24 08:34:57,878 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,879 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,881 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,882 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,884 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,886 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2025-04-24 08:34:57,888 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 08:34:57,889 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 08:34:57,891 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 08:34:57,893 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 08:34:57,895 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 08:34:57,896 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 08:34:57,898 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 08:34:57,900 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,901 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,903 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,905 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,906 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,908 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,910 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 08:34:57,912 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,913 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,915 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,916 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,918 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,920 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 08:34:57,922 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 08:34:57,923 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 08:34:57,925 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 08:34:57,928 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,929 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,931 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,932 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,934 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,936 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,938 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,940 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,941 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,944 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,945 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,947 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,949 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,951 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,952 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,954 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,956 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,958 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,959 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,961 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,963 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,964 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,966 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,968 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:34:57,970 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,971 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,973 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,975 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,977 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,978 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,980 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,982 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2025-04-24 08:34:57,984 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2025-04-24 08:34:57,985 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2025-04-24 08:34:57,987 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2025-04-24 08:34:57,988 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2025-04-24 08:34:57,991 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2025-04-24 08:34:57,992 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2025-04-24 08:34:57,994 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2025-04-24 08:34:57,995 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2025-04-24 08:34:57,997 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2025-04-24 08:34:57,999 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2025-04-24 08:34:58,000 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2025-04-24 08:34:58,002 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2025-04-24 08:34:58,003 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2025-04-24 08:34:58,005 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2025-04-24 08:34:58,007 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2025-04-24 08:34:58,008 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2025-04-24 08:34:58,011 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,012 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,014 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,015 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,017 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,019 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,021 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,023 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,024 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,026 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,028 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,030 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,031 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,033 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,035 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,037 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,039 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2025-04-24 08:34:58,041 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2025-04-24 08:34:58,042 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2025-04-24 08:34:58,043 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2025-04-24 08:34:58,045 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2025-04-24 08:34:58,047 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2025-04-24 08:34:58,049 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,052 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,053 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,055 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,056 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,058 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,060 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,062 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,063 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,065 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2025-04-24 08:34:58,067 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene 2025-04-24 08:34:58,068 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene 2025-04-24 08:34:58,070 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt 2025-04-24 08:34:58,071 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2025-04-24 08:34:58,073 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2025-04-24 08:34:58,075 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,076 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,078 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,080 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,081 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,083 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:34:58,086 root INFO running egg_info 2025-04-24 08:34:58,101 root INFO writing biopython.egg-info/PKG-INFO 2025-04-24 08:34:58,104 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2025-04-24 08:34:58,105 root INFO writing requirements to biopython.egg-info/requires.txt 2025-04-24 08:34:58,107 root INFO writing top-level names to biopython.egg-info/top_level.txt 2025-04-24 08:34:58,196 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2025-04-24 08:34:58,466 root INFO reading manifest template 'MANIFEST.in' 2025-04-24 08:34:58,936 root WARNING warning: no previously-included files found matching 'Doc/_build' 2025-04-24 08:34:58,961 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2025-04-24 08:34:58,974 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-04-24 08:34:58,986 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-04-24 08:34:58,998 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2025-04-24 08:34:59,010 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2025-04-24 08:34:59,043 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2025-04-24 08:34:59,044 root INFO adding license file 'LICENSE' 2025-04-24 08:34:59,044 root INFO adding license file 'LICENSE.rst' 2025-04-24 08:34:59,237 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2025-04-24 08:34:59,411 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:59,413 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio 2025-04-24 08:34:59,414 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:59,416 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:59,418 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:34:59,421 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,422 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,424 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,426 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,428 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,429 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,431 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,433 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,434 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,436 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,438 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,440 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,441 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,443 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,445 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,446 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,448 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,450 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,451 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,453 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,455 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,456 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,458 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,460 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,462 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,463 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,465 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,467 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,468 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,470 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,472 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 08:34:59,474 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,925 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,926 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,928 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,930 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,932 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,933 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,935 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,937 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,939 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,940 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,942 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,944 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,946 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,948 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,949 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,951 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,953 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,955 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,956 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,958 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,960 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,962 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,964 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,966 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,967 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,969 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,971 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,972 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,974 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,976 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,978 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,979 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,981 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,983 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,984 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,986 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,988 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,990 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,992 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,994 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,996 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,997 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:34:59,999 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2025-04-24 08:35:00,001 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2025-04-24 08:35:00,002 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2025-04-24 08:35:00,003 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2025-04-24 08:35:00,005 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2025-04-24 08:35:00,007 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:35:00,009 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:35:00,010 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:35:00,012 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:35:00,014 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:35:00,016 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:35:00,018 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL 2025-04-24 08:35:00,056 root INFO running build_ext 2025-04-24 08:35:00,066 root INFO building 'Bio.Align._codonaligner' extension 2025-04-24 08:35:00,067 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align 2025-04-24 08:35:00,069 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o 2025-04-24 08:35:02,681 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:02,723 root INFO building 'Bio.Align._pairwisealigner' extension 2025-04-24 08:35:02,724 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o 2025-04-24 08:35:36,828 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:36,925 root INFO building 'Bio.Align._aligncore' extension 2025-04-24 08:35:36,926 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o 2025-04-24 08:35:38,154 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:38,193 root INFO building 'Bio.cpairwise2' extension 2025-04-24 08:35:38,195 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o 2025-04-24 08:35:39,747 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:39,787 root INFO building 'Bio.Nexus.cnexus' extension 2025-04-24 08:35:39,788 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus 2025-04-24 08:35:39,789 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o 2025-04-24 08:35:40,496 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:40,534 root INFO building 'Bio.motifs._pwm' extension 2025-04-24 08:35:40,535 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs 2025-04-24 08:35:40,536 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o 2025-04-24 08:35:41,331 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:41,369 root INFO building 'Bio.Cluster._cluster' extension 2025-04-24 08:35:41,371 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster 2025-04-24 08:35:41,372 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2025-04-24 08:35:52,004 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2025-04-24 08:35:55,279 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:55,335 root INFO building 'Bio.PDB.ccealign' extension 2025-04-24 08:35:55,337 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB 2025-04-24 08:35:55,338 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o 2025-04-24 08:35:56,968 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:57,007 root INFO building 'Bio.PDB.kdtrees' extension 2025-04-24 08:35:57,009 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o 2025-04-24 08:35:59,038 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:59,079 root INFO building 'Bio.PDB._bcif_helper' extension 2025-04-24 08:35:59,081 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o 2025-04-24 08:35:59,915 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so 2025-04-24 08:35:59,952 root INFO building 'Bio.SeqIO._twoBitIO' extension 2025-04-24 08:35:59,954 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO 2025-04-24 08:35:59,955 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o 2025-04-24 08:36:00,924 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so 2025-04-24 08:36:00,994 root INFO installing to build/bdist.linux-riscv64/wheel 2025-04-24 08:36:00,994 root INFO running install 2025-04-24 08:36:01,061 root INFO running install_lib 2025-04-24 08:36:01,079 root INFO creating build/bdist.linux-riscv64/wheel 2025-04-24 08:36:01,081 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2025-04-24 08:36:01,082 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,083 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,084 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,085 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,086 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,088 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2025-04-24 08:36:01,090 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2025-04-24 08:36:01,091 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2025-04-24 08:36:01,092 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2025-04-24 08:36:01,093 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2025-04-24 08:36:01,095 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,096 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,098 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2025-04-24 08:36:01,099 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Medline 2025-04-24 08:36:01,101 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2025-04-24 08:36:01,102 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2025-04-24 08:36:01,103 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2025-04-24 08:36:01,105 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2025-04-24 08:36:01,107 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2025-04-24 08:36:01,109 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2025-04-24 08:36:01,110 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2025-04-24 08:36:01,111 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2025-04-24 08:36:01,113 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2025-04-24 08:36:01,114 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2025-04-24 08:36:01,116 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2025-04-24 08:36:01,117 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,118 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,119 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,121 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,122 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,123 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,124 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,126 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,127 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,128 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,130 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2025-04-24 08:36:01,131 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2025-04-24 08:36:01,132 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,134 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,135 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,136 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,137 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,139 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,140 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2025-04-24 08:36:01,142 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,143 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,144 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,145 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,146 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,148 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,149 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,150 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,152 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,153 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,155 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,156 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,157 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 08:36:01,159 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2025-04-24 08:36:01,160 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,162 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,163 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,165 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2025-04-24 08:36:01,166 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2025-04-24 08:36:01,168 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,169 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,170 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,171 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,172 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,173 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,175 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,176 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,177 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,178 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,179 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,180 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,181 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,182 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,183 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,184 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,185 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,186 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,187 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,188 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,189 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,190 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,192 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,193 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,194 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,195 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,196 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,197 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,198 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,199 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,200 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 08:36:01,202 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,203 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,206 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,208 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,210 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2025-04-24 08:36:01,211 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,212 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,214 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,216 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,217 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,221 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,222 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/Applications 2025-04-24 08:36:01,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,230 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,231 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,232 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,234 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,235 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,251 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2025-04-24 08:36:01,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,257 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2025-04-24 08:36:01,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2025-04-24 08:36:01,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2025-04-24 08:36:01,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2025-04-24 08:36:01,262 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2025-04-24 08:36:01,263 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SVDSuperimposer 2025-04-24 08:36:01,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,267 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,269 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2025-04-24 08:36:01,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,273 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,275 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,278 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2025-04-24 08:36:01,281 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2025-04-24 08:36:01,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2025-04-24 08:36:01,284 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2025-04-24 08:36:01,285 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2025-04-24 08:36:01,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2025-04-24 08:36:01,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2025-04-24 08:36:01,289 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,290 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,293 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 08:36:01,297 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2025-04-24 08:36:01,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 08:36:01,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 08:36:01,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 08:36:01,303 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2025-04-24 08:36:01,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2025-04-24 08:36:01,305 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2025-04-24 08:36:01,307 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2025-04-24 08:36:01,308 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2025-04-24 08:36:01,309 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2025-04-24 08:36:01,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2025-04-24 08:36:01,311 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2025-04-24 08:36:01,313 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2025-04-24 08:36:01,314 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,315 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,318 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,319 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 08:36:01,322 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2025-04-24 08:36:01,323 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2025-04-24 08:36:01,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2025-04-24 08:36:01,326 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2025-04-24 08:36:01,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,328 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,330 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,333 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2025-04-24 08:36:01,337 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2025-04-24 08:36:01,338 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2025-04-24 08:36:01,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2025-04-24 08:36:01,340 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,341 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,343 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2025-04-24 08:36:01,344 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2025-04-24 08:36:01,345 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2025-04-24 08:36:01,346 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,348 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,349 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2025-04-24 08:36:01,350 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,352 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,353 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,354 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,355 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,356 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,357 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2025-04-24 08:36:01,359 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2025-04-24 08:36:01,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniGene 2025-04-24 08:36:01,361 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2025-04-24 08:36:01,362 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,364 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,365 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2025-04-24 08:36:01,366 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2025-04-24 08:36:01,368 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2025-04-24 08:36:01,369 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,370 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,371 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,374 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,375 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,377 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,378 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,379 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,380 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,381 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2025-04-24 08:36:01,382 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/applications 2025-04-24 08:36:01,384 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/applications 2025-04-24 08:36:01,385 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2025-04-24 08:36:01,387 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2025-04-24 08:36:01,388 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2025-04-24 08:36:01,389 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2025-04-24 08:36:01,391 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing/Applications 2025-04-24 08:36:01,392 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing/Applications 2025-04-24 08:36:01,393 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing/Applications 2025-04-24 08:36:01,395 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing/Applications 2025-04-24 08:36:01,396 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2025-04-24 08:36:01,397 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2025-04-24 08:36:01,399 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2025-04-24 08:36:01,400 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2025-04-24 08:36:01,401 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2025-04-24 08:36:01,403 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2025-04-24 08:36:01,407 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2025-04-24 08:36:01,410 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2025-04-24 08:36:01,411 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2025-04-24 08:36:01,412 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2025-04-24 08:36:01,413 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2025-04-24 08:36:01,414 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2025-04-24 08:36:01,416 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2025-04-24 08:36:01,417 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2025-04-24 08:36:01,419 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2025-04-24 08:36:01,420 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Enzyme 2025-04-24 08:36:01,422 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2025-04-24 08:36:01,423 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Gene 2025-04-24 08:36:01,424 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2025-04-24 08:36:01,425 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Map 2025-04-24 08:36:01,427 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2025-04-24 08:36:01,428 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Compound 2025-04-24 08:36:01,429 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2025-04-24 08:36:01,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2025-04-24 08:36:01,432 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2025-04-24 08:36:01,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2025-04-24 08:36:01,435 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2025-04-24 08:36:01,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,439 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,441 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,442 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,444 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2025-04-24 08:36:01,445 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,447 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,448 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,449 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,450 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,451 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,454 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,455 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2025-04-24 08:36:01,457 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2025-04-24 08:36:01,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/Applications 2025-04-24 08:36:01,459 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/Applications 2025-04-24 08:36:01,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/Applications 2025-04-24 08:36:01,461 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/Applications 2025-04-24 08:36:01,463 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,464 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,465 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,467 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,468 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,469 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,471 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,472 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,474 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,475 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2025-04-24 08:36:01,476 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2025-04-24 08:36:01,477 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2025-04-24 08:36:01,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2025-04-24 08:36:01,480 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2025-04-24 08:36:01,482 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2025-04-24 08:36:01,483 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2025-04-24 08:36:01,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2025-04-24 08:36:01,485 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2025-04-24 08:36:01,486 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2025-04-24 08:36:01,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2025-04-24 08:36:01,489 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,491 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2025-04-24 08:36:01,492 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/TogoWS 2025-04-24 08:36:01,493 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,495 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2025-04-24 08:36:01,496 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,497 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,498 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,500 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,501 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,502 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,504 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2025-04-24 08:36:01,505 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2025-04-24 08:36:01,506 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2025-04-24 08:36:01,508 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2025-04-24 08:36:01,510 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2025-04-24 08:36:01,511 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2025-04-24 08:36:01,513 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2025-04-24 08:36:01,516 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2025-04-24 08:36:01,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Alphabet 2025-04-24 08:36:01,518 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2025-04-24 08:36:01,519 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2025-04-24 08:36:01,520 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2025-04-24 08:36:01,522 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2025-04-24 08:36:01,523 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,524 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,526 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,529 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2025-04-24 08:36:01,531 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2025-04-24 08:36:01,532 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,533 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,534 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,536 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,537 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,539 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,540 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,543 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,544 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,545 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,547 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,548 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,549 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,551 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,553 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,554 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,555 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,557 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,558 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,559 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,560 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,562 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,563 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,564 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2025-04-24 08:36:01,566 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2025-04-24 08:36:01,567 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Compass 2025-04-24 08:36:01,569 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2025-04-24 08:36:01,570 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen 2025-04-24 08:36:01,572 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2025-04-24 08:36:01,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2025-04-24 08:36:01,574 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2025-04-24 08:36:01,576 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2025-04-24 08:36:01,577 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2025-04-24 08:36:01,578 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2025-04-24 08:36:01,580 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2025-04-24 08:36:01,581 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2025-04-24 08:36:01,582 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2025-04-24 08:36:01,584 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2025-04-24 08:36:01,585 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2025-04-24 08:36:01,586 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2025-04-24 08:36:01,587 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2025-04-24 08:36:01,590 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2025-04-24 08:36:01,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,592 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,593 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,594 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,596 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,597 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,598 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,599 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,600 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,603 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,604 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,606 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,607 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,611 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,615 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,618 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,619 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,622 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,624 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,625 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,627 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,628 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,629 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,630 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,631 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,632 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,634 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,636 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,638 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,640 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,641 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,642 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,644 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,645 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,647 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,648 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,652 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,653 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,655 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,656 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,658 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,660 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,662 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,663 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,664 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,665 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,667 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,668 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,670 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,671 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,673 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,675 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,676 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,677 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,678 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,679 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,681 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,683 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,684 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,685 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,687 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,690 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,691 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,692 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,694 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,696 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build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,833 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,834 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,839 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,840 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,842 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,845 root INFO copying 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INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,863 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,864 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,866 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,868 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,869 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,871 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,872 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,873 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,875 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,876 root INFO 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,884 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,886 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,887 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,888 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,889 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,890 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,891 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,892 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,894 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,895 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,897 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,898 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,899 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,901 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,902 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,903 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,904 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,905 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,907 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,908 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,909 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,911 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,913 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,914 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,915 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,916 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,918 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,919 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,921 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,922 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,923 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,924 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,925 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,926 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,928 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,929 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,930 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,932 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,933 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,934 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,935 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,936 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,938 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,939 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,940 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,942 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,943 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,944 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,945 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,947 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,948 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,949 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,951 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,952 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,953 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,955 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2025-04-24 08:36:01,956 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,958 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2025-04-24 08:36:01,959 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway 2025-04-24 08:36:01,961 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2025-04-24 08:36:01,962 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2025-04-24 08:36:01,963 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2025-04-24 08:36:01,964 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2025-04-24 08:36:01,966 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application 2025-04-24 08:36:01,967 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Application 2025-04-24 08:36:01,968 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,970 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/./Bio 2025-04-24 08:36:01,972 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2025-04-24 08:36:01,973 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,974 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,975 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,976 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,977 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,978 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,980 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,981 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,982 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,983 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,984 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,985 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,987 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,988 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,989 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,991 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,992 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,993 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,994 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,995 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,997 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,998 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:01,999 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,001 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,002 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,005 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,006 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,007 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,008 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,010 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,011 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,012 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,015 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,016 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,018 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,019 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,020 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,021 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,023 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,024 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,025 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,027 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,030 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,032 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2025-04-24 08:36:02,033 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2025-04-24 08:36:02,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2025-04-24 08:36:02,035 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2025-04-24 08:36:02,036 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB/mmtf 2025-04-24 08:36:02,038 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2025-04-24 08:36:02,039 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/CAPS 2025-04-24 08:36:02,041 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2025-04-24 08:36:02,042 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2025-04-24 08:36:02,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2025-04-24 08:36:02,044 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2025-04-24 08:36:02,046 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/./Bio/Emboss 2025-04-24 08:36:02,048 root INFO running install_egg_info 2025-04-24 08:36:02,073 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/./biopython-1.85-py3.12.egg-info 2025-04-24 08:36:02,078 root INFO running install_scripts 2025-04-24 08:36:02,114 root INFO creating build/bdist.linux-riscv64/wheel/biopython-1.85.dist-info/WHEEL 2025-04-24 08:36:02,118 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.85/.dist/.tmp-r83k_ybe/biopython-1.85-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2025-04-24 08:36:02,120 wheel INFO adding 'Bio/File.py' 2025-04-24 08:36:02,123 wheel INFO adding 'Bio/LogisticRegression.py' 2025-04-24 08:36:02,125 wheel INFO adding 'Bio/MarkovModel.py' 2025-04-24 08:36:02,127 wheel INFO adding 'Bio/MaxEntropy.py' 2025-04-24 08:36:02,129 wheel INFO adding 'Bio/NaiveBayes.py' 2025-04-24 08:36:02,131 wheel INFO adding 'Bio/Seq.py' 2025-04-24 08:36:02,136 wheel INFO adding 'Bio/SeqFeature.py' 2025-04-24 08:36:02,139 wheel INFO adding 'Bio/SeqRecord.py' 2025-04-24 08:36:02,142 wheel INFO adding 'Bio/__init__.py' 2025-04-24 08:36:02,144 wheel INFO adding 'Bio/_utils.py' 2025-04-24 08:36:02,146 wheel INFO adding 'Bio/bgzf.py' 2025-04-24 08:36:02,148 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so' 2025-04-24 08:36:02,150 wheel INFO adding 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'Bio/Align/Applications/_Probcons.py' 2025-04-24 08:36:02,253 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2025-04-24 08:36:02,254 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2025-04-24 08:36:02,256 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2025-04-24 08:36:02,257 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2025-04-24 08:36:02,259 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2025-04-24 08:36:02,260 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2025-04-24 08:36:02,261 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2025-04-24 08:36:02,262 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2025-04-24 08:36:02,264 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2025-04-24 08:36:02,265 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2025-04-24 08:36:02,266 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 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INFO adding 'Bio/motifs/transfac.py' 2025-04-24 08:36:03,315 wheel INFO adding 'Bio/motifs/xms.py' 2025-04-24 08:36:03,317 wheel INFO adding 'Bio/motifs/applications/__init__.py' 2025-04-24 08:36:03,318 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py' 2025-04-24 08:36:03,320 wheel INFO adding 'Bio/motifs/jaspar/__init__.py' 2025-04-24 08:36:03,322 wheel INFO adding 'Bio/motifs/jaspar/db.py' 2025-04-24 08:36:03,324 wheel INFO adding 'Bio/phenotype/__init__.py' 2025-04-24 08:36:03,326 wheel INFO adding 'Bio/phenotype/phen_micro.py' 2025-04-24 08:36:03,328 wheel INFO adding 'Bio/phenotype/pm_fitting.py' 2025-04-24 08:36:03,330 wheel INFO adding 'BioSQL/BioSeq.py' 2025-04-24 08:36:03,332 wheel INFO adding 'BioSQL/BioSeqDatabase.py' 2025-04-24 08:36:03,334 wheel INFO adding 'BioSQL/DBUtils.py' 2025-04-24 08:36:03,336 wheel INFO adding 'BioSQL/Loader.py' 2025-04-24 08:36:03,338 wheel INFO adding 'BioSQL/__init__.py' 2025-04-24 08:36:03,339 wheel INFO adding 'BioSQL/py.typed' 2025-04-24 08:36:03,341 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE' 2025-04-24 08:36:03,343 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE.rst' 2025-04-24 08:36:03,344 wheel INFO adding 'biopython-1.85.dist-info/METADATA' 2025-04-24 08:36:03,346 wheel INFO adding 'biopython-1.85.dist-info/WHEEL' 2025-04-24 08:36:03,347 wheel INFO adding 'biopython-1.85.dist-info/top_level.txt' 2025-04-24 08:36:03,357 wheel INFO adding 'biopython-1.85.dist-info/RECORD' 2025-04-24 08:36:03,371 root INFO removing build/bdist.linux-riscv64/wheel 2025-04-24 08:36:03,464 gpep517 INFO The backend produced .dist/biopython-1.85-cp312-cp312-linux_riscv64.whl biopython-1.85-cp312-cp312-linux_riscv64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 6.4 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.85-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 11.1 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.85-r0.apk >>> py3-biopython: Build complete at Thu, 24 Apr 2025 08:36:18 +0000 elapsed time 0h 1m 34s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/28) Purging .makedepends-py3-biopython (20250424.083448) (2/28) Purging py3-gpep517-pyc (16-r0) (3/28) Purging py3-gpep517 (16-r0) (4/28) Purging py3-installer-pyc (0.7.0-r2) (5/28) Purging py3-installer (0.7.0-r2) (6/28) Purging py3-setuptools-pyc (77.0.3-r0) (7/28) Purging py3-setuptools (77.0.3-r0) (8/28) Purging py3-wheel-pyc (0.43.0-r0) (9/28) Purging py3-wheel (0.43.0-r0) (10/28) Purging py3-packaging-pyc (24.2-r0) (11/28) Purging py3-packaging (24.2-r0) (12/28) Purging py3-parsing-pyc (3.2.0-r0) (13/28) Purging py3-parsing (3.2.0-r0) (14/28) Purging py3-numpy-dev (2.2.4-r0) (15/28) Purging py3-numpy-tests (2.2.4-r0) (16/28) Purging py3-numpy-pyc (2.2.4-r0) (17/28) Purging py3-numpy (2.2.4-r0) (18/28) Purging openblas (0.3.28-r0) (19/28) Purging python3-dev (3.12.10-r0) (20/28) Purging python3-pyc (3.12.10-r0) (21/28) Purging python3-pycache-pyc0 (3.12.10-r0) (22/28) Purging pyc (3.12.10-r0) (23/28) Purging python3 (3.12.10-r0) (24/28) Purging gdbm (1.24-r0) (25/28) Purging libffi (3.4.8-r0) (26/28) Purging libpanelw (6.5_p20250412-r0) (27/28) Purging mpdecimal (4.0.0-r0) (28/28) Purging sqlite-libs (3.49.1-r0) Executing busybox-1.37.0-r16.trigger OK: 343 MiB in 110 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...