>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:45:14 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/30) Installing libbz2 (1.0.8-r6)
( 2/30) Installing libffi (3.5.2-r0)
( 3/30) Installing gdbm (1.26-r0)
( 4/30) Installing xz-libs (5.8.2-r0)
( 5/30) Installing mpdecimal (4.0.1-r0)
( 6/30) Installing libpanelw (6.6_p20251231-r0)
( 7/30) Installing sqlite-libs (3.51.2-r1)
( 8/30) Installing python3 (3.12.12-r0)
( 9/30) Installing python3-pycache-pyc0 (3.12.12-r0)
(10/30) Installing pyc (3.12.12-r0)
(11/30) Installing py3-numpy-pyc (2.3.5-r0)
(12/30) Installing python3-pyc (3.12.12-r0)
(13/30) Installing openblas (0.3.30-r2)
(14/30) Installing py3-numpy (2.3.5-r0)
(15/30) Installing py3-numpy-tests (2.3.5-r0)
(16/30) Installing py3-installer (0.7.0-r2)
(17/30) Installing py3-installer-pyc (0.7.0-r2)
(18/30) Installing py3-gpep517 (19-r1)
(19/30) Installing py3-gpep517-pyc (19-r1)
(20/30) Installing py3-parsing (3.3.1-r0)
(21/30) Installing py3-parsing-pyc (3.3.1-r0)
(22/30) Installing py3-packaging (25.0-r0)
(23/30) Installing py3-packaging-pyc (25.0-r0)
(24/30) Installing py3-setuptools (80.9.0-r2)
(25/30) Installing py3-setuptools-pyc (80.9.0-r2)
(26/30) Installing py3-wheel (0.46.1-r0)
(27/30) Installing py3-wheel-pyc (0.46.1-r0)
(28/30) Installing py3-numpy-dev (2.3.5-r0)
(29/30) Installing python3-dev (3.12.12-r0)
(30/30) Installing .makedepends-py3-biopython (20260127.014517)
Executing busybox-1.37.0-r31.trigger
OK: 640.6 MiB in 133 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
wget: server returned error: HTTP/1.1 404 Not Found
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz
Connecting to files.pythonhosted.org (151.101.128.223:443)
Connecting to files.pythonhosted.org (151.101.128.223:443)
saving to '/var/cache/distfiles/edge/biopython-1.86.tar.gz.part'
biopython-1.86.tar.g  97% |******************************* | 18.4M  0:00:00 ETA
biopython-1.86.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.86.tar.gz.part' saved
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.86.tar.gz...
2026-01-27 01:45:26,756 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2026-01-27 01:45:26,887 root INFO running bdist_wheel
2026-01-27 01:45:26,979 root INFO running build
2026-01-27 01:45:26,979 root INFO running build_py
2026-01-27 01:45:27,000 root INFO creating build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,002 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,005 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,008 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,010 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,012 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,015 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,016 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,018 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:27,021 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy
2026-01-27 01:45:27,022 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
2026-01-27 01:45:27,023 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
2026-01-27 01:45:27,026 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,028 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,029 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,031 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,033 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,035 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,037 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,039 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,041 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,042 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,044 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,046 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,047 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,049 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,051 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,053 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,054 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,056 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,057 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,059 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,061 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,063 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,065 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,066 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,068 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:27,070 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:45:27,071 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:45:27,074 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,075 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,077 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,078 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,080 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,082 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,084 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,085 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,087 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,089 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,091 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,092 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2026-01-27 01:45:27,094 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet
2026-01-27 01:45:27,095 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet
2026-01-27 01:45:27,097 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,098 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,100 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,102 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,104 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,106 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2026-01-27 01:45:27,108 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS
2026-01-27 01:45:27,109 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS
2026-01-27 01:45:27,111 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:45:27,112 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:45:27,115 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign
2026-01-27 01:45:27,116 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2026-01-27 01:45:27,117 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2026-01-27 01:45:27,119 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2026-01-27 01:45:27,121 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass
2026-01-27 01:45:27,122 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass
2026-01-27 01:45:27,125 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data
2026-01-27 01:45:27,126 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2026-01-27 01:45:27,128 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2026-01-27 01:45:27,129 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2026-01-27 01:45:27,131 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2026-01-27 01:45:27,133 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss
2026-01-27 01:45:27,134 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2026-01-27 01:45:27,136 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2026-01-27 01:45:27,137 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2026-01-27 01:45:27,140 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez
2026-01-27 01:45:27,141 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
2026-01-27 01:45:27,142 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
2026-01-27 01:45:27,148 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,149 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,150 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,152 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,154 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,155 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,157 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2026-01-27 01:45:27,159 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank
2026-01-27 01:45:27,160 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2026-01-27 01:45:27,162 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2026-01-27 01:45:27,164 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2026-01-27 01:45:27,166 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2026-01-27 01:45:27,168 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo
2026-01-27 01:45:27,169 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
2026-01-27 01:45:27,170 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
2026-01-27 01:45:27,173 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,174 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,175 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,177 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,179 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,180 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,182 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,184 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2026-01-27 01:45:27,186 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,187 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,189 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,190 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,192 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,194 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,196 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,197 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,200 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,202 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,203 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,205 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,207 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:45:27,209 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM
2026-01-27 01:45:27,210 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2026-01-27 01:45:27,212 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG
2026-01-27 01:45:27,213 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
2026-01-27 01:45:27,214 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
2026-01-27 01:45:27,216 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
2026-01-27 01:45:27,218 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
2026-01-27 01:45:27,220 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
2026-01-27 01:45:27,221 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
2026-01-27 01:45:27,222 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
2026-01-27 01:45:27,224 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
2026-01-27 01:45:27,226 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
2026-01-27 01:45:27,227 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
2026-01-27 01:45:27,229 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2026-01-27 01:45:27,230 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2026-01-27 01:45:27,232 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2026-01-27 01:45:27,233 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2026-01-27 01:45:27,235 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2026-01-27 01:45:27,236 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2026-01-27 01:45:27,238 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2026-01-27 01:45:27,240 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2026-01-27 01:45:27,242 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline
2026-01-27 01:45:27,243 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline
2026-01-27 01:45:27,245 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,246 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,248 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,250 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,252 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,253 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,255 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,256 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,258 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,260 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,262 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,263 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:27,265 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2026-01-27 01:45:27,266 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2026-01-27 01:45:27,268 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2026-01-27 01:45:27,270 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,271 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,273 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,275 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,277 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,278 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:27,281 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR
2026-01-27 01:45:27,282 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2026-01-27 01:45:27,283 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2026-01-27 01:45:27,285 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2026-01-27 01:45:27,287 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway
2026-01-27 01:45:27,288 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway
2026-01-27 01:45:27,290 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2026-01-27 01:45:27,291 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2026-01-27 01:45:27,293 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2026-01-27 01:45:27,294 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2026-01-27 01:45:27,299 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,300 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,302 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,303 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,305 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,306 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,308 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,310 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,312 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,313 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,315 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,317 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,318 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,320 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,322 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,323 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,325 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,327 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,328 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,330 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,332 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,334 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,335 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,337 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,339 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,340 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,342 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,344 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,345 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,347 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,348 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,351 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,352 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,354 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,356 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,357 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,359 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,362 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,364 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,365 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,367 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:27,369 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype
2026-01-27 01:45:27,370 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2026-01-27 01:45:27,372 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2026-01-27 01:45:27,374 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2026-01-27 01:45:27,376 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen
2026-01-27 01:45:27,377 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen
2026-01-27 01:45:27,379 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:45:27,380 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:45:27,382 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:45:27,383 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:45:27,385 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction
2026-01-27 01:45:27,386 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2026-01-27 01:45:27,388 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2026-01-27 01:45:27,390 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2026-01-27 01:45:27,395 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2026-01-27 01:45:27,398 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,399 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,401 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,403 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,404 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,406 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,408 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,410 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2026-01-27 01:45:27,412 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,413 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,415 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,417 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,418 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,420 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2026-01-27 01:45:27,423 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,424 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,425 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,427 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,429 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,430 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2026-01-27 01:45:27,433 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:45:27,434 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:45:27,436 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:45:27,437 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:45:27,440 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:45:27,441 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:45:27,442 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:45:27,445 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,446 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,447 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,449 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,451 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,452 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,454 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:45:27,456 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:45:27,457 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:45:27,459 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:45:27,461 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:45:27,462 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:45:27,464 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,465 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,467 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,469 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,471 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,472 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:45:27,474 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:45:27,476 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:45:27,477 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:45:27,480 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,481 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,483 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,485 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,486 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,488 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,490 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,492 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,494 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,496 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,498 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,499 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,501 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,503 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,505 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,506 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,508 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,510 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,512 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,513 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,515 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,516 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,518 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,520 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:27,522 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,523 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,525 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,527 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,528 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,530 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,532 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,534 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2026-01-27 01:45:27,536 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2026-01-27 01:45:27,537 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2026-01-27 01:45:27,539 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2026-01-27 01:45:27,540 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2026-01-27 01:45:27,542 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
2026-01-27 01:45:27,543 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
2026-01-27 01:45:27,546 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2026-01-27 01:45:27,547 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2026-01-27 01:45:27,548 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2026-01-27 01:45:27,550 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS
2026-01-27 01:45:27,552 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS
2026-01-27 01:45:27,554 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,555 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,557 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,559 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,561 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,562 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,564 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,566 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,567 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,569 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,571 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,573 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,574 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,576 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,578 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,580 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,581 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2026-01-27 01:45:27,584 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,585 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,586 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,588 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,589 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,591 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,593 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,595 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,596 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,598 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2026-01-27 01:45:27,600 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene
2026-01-27 01:45:27,601 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene
2026-01-27 01:45:27,603 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt
2026-01-27 01:45:27,604 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
2026-01-27 01:45:27,606 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
2026-01-27 01:45:27,608 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,609 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,612 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,613 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,615 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,617 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:27,619 root INFO running egg_info
2026-01-27 01:45:27,634 root INFO writing biopython.egg-info/PKG-INFO
2026-01-27 01:45:27,637 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-01-27 01:45:27,638 root INFO writing requirements to biopython.egg-info/requires.txt
2026-01-27 01:45:27,639 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-01-27 01:45:27,729 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-01-27 01:45:27,997 root INFO reading manifest template 'MANIFEST.in'
2026-01-27 01:45:28,461 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-01-27 01:45:28,485 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-01-27 01:45:28,498 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-01-27 01:45:28,510 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-01-27 01:45:28,523 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-01-27 01:45:28,535 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-01-27 01:45:28,567 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-01-27 01:45:28,567 root INFO adding license file 'LICENSE'
2026-01-27 01:45:28,568 root INFO adding license file 'LICENSE.rst'
2026-01-27 01:45:28,757 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2026-01-27 01:45:28,904 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:28,906 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio
2026-01-27 01:45:28,907 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:28,909 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:28,911 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:28,913 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:28,917 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:28,918 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:45:28,921 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:45:28,922 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,923 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,925 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,927 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,928 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,930 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,932 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,933 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,935 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,937 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,938 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,940 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,942 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,944 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,945 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,947 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,949 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,950 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,952 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,954 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,955 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,957 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,959 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,960 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,962 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,964 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,965 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,967 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,969 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,971 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,973 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:45:28,974 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:45:28,977 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:45:28,979 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:45:28,981 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,982 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,984 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,985 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,987 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,989 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,991 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,993 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,994 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,996 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:28,998 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,000 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,001 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,003 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,005 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,007 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,008 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,010 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,012 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,013 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,015 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,017 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,019 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,020 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,022 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,024 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,026 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,028 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,030 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,033 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,034 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,332 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,335 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,337 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,339 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,340 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,342 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,344 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,354 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,366 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,370 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,373 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,375 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,377 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,378 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,380 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,382 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,384 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,385 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,387 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,389 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,391 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,393 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,395 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,397 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,399 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,401 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,403 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,405 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,406 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,408 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,412 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,414 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,416 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,418 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,420 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,422 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,424 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,425 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,427 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,429 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,431 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,432 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,434 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,436 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,438 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,445 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,446 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:45:29,454 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,455 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,457 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,459 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,461 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,462 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,464 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,466 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,468 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,470 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,472 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,473 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,475 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,477 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,478 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,480 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,482 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,483 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,485 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,487 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,488 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,490 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,492 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,494 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,496 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,498 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,499 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,501 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,503 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:45:29,505 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:45:29,506 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:45:29,507 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:45:29,509 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:45:29,511 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:45:29,513 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:45:29,514 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:29,516 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:29,518 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:45:29,520 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:45:29,522 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL
2026-01-27 01:45:29,560 root INFO running build_ext
2026-01-27 01:45:29,569 root INFO building 'Bio.Align._aligncore' extension
2026-01-27 01:45:29,571 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align
2026-01-27 01:45:29,573 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o
2026-01-27 01:45:30,865 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so
2026-01-27 01:45:30,905 root INFO building 'Bio.Align._alignmentcounts' extension
2026-01-27 01:45:30,907 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_alignmentcounts.o
2026-01-27 01:45:34,655 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-riscv64-linux-musl.so
2026-01-27 01:45:34,700 root INFO building 'Bio.Align._codonaligner' extension
2026-01-27 01:45:34,702 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o
2026-01-27 01:45:37,410 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so
2026-01-27 01:45:37,453 root INFO building 'Bio.Align._pairwisealigner' extension
2026-01-27 01:45:37,455 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o
2026-01-27 01:46:14,074 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:14,170 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-01-27 01:46:14,172 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:46:14,173 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o
2026-01-27 01:46:15,148 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:15,187 root INFO building 'Bio.cpairwise2' extension
2026-01-27 01:46:15,189 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o
2026-01-27 01:46:16,806 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:16,846 root INFO building 'Bio.Nexus.cnexus' extension
2026-01-27 01:46:16,847 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus
2026-01-27 01:46:16,848 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o
2026-01-27 01:46:17,552 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:17,591 root INFO building 'Bio.motifs._pwm' extension
2026-01-27 01:46:17,592 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs
2026-01-27 01:46:17,594 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o
2026-01-27 01:46:18,388 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:18,426 root INFO building 'Bio.Cluster._cluster' extension
2026-01-27 01:46:18,428 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster
2026-01-27 01:46:18,429 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-01-27 01:46:29,826 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-01-27 01:46:33,512 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:33,568 root INFO building 'Bio.PDB.ccealign' extension
2026-01-27 01:46:33,569 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB
2026-01-27 01:46:33,571 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o
2026-01-27 01:46:35,306 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:35,345 root INFO building 'Bio.PDB.kdtrees' extension
2026-01-27 01:46:35,347 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o
2026-01-27 01:46:37,368 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:37,409 root INFO building 'Bio.PDB._bcif_helper' extension
2026-01-27 01:46:37,411 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o
2026-01-27 01:46:38,238 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:38,276 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-01-27 01:46:38,277 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO
2026-01-27 01:46:38,278 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o
2026-01-27 01:46:39,298 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so
2026-01-27 01:46:39,374 root INFO installing to build/bdist.linux-riscv64/wheel
2026-01-27 01:46:39,374 root INFO running install
2026-01-27 01:46:39,440 root INFO running install_lib
2026-01-27 01:46:39,460 root INFO creating build/bdist.linux-riscv64/wheel
2026-01-27 01:46:39,462 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL
2026-01-27 01:46:39,463 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,465 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,466 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,467 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,468 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,469 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-01-27 01:46:39,471 root INFO creating build/bdist.linux-riscv64/wheel/Bio
2026-01-27 01:46:39,472 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy
2026-01-27 01:46:39,473 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy
2026-01-27 01:46:39,475 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy
2026-01-27 01:46:39,476 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,478 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline
2026-01-27 01:46:39,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Medline
2026-01-27 01:46:39,481 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank
2026-01-27 01:46:39,482 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-01-27 01:46:39,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-01-27 01:46:39,485 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-01-27 01:46:39,487 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-01-27 01:46:39,489 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data
2026-01-27 01:46:39,490 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-01-27 01:46:39,492 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-01-27 01:46:39,493 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-01-27 01:46:39,494 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-01-27 01:46:39,496 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO
2026-01-27 01:46:39,497 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,498 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,500 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,501 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,502 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,503 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,505 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,506 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,507 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,509 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,510 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-01-27 01:46:39,512 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics
2026-01-27 01:46:39,513 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,514 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,515 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,518 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,519 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,521 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-01-27 01:46:39,522 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,524 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,525 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,526 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,529 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,531 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,532 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,534 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,535 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,536 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,538 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:46:39,540 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align
2026-01-27 01:46:39,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,542 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,544 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,545 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,547 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices
2026-01-27 01:46:39,548 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:46:39,549 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:46:39,551 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:46:39,552 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,553 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,555 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,556 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,557 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,558 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,559 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,560 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,561 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,562 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,563 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,564 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,565 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,566 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,567 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,568 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,569 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,570 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,571 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,572 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,574 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,575 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,576 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,577 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,578 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,580 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,581 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,582 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,583 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,584 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:46:39,585 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:46:39,586 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,587 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,589 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,593 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,594 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,598 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,600 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,601 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,603 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,605 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,606 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,607 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,609 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,611 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,615 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,616 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_alignmentcounts.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,619 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,622 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,624 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,627 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,628 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-01-27 01:46:39,630 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,631 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,634 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR
2026-01-27 01:46:39,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-01-27 01:46:39,636 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-01-27 01:46:39,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-01-27 01:46:39,639 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer
2026-01-27 01:46:39,640 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SVDSuperimposer
2026-01-27 01:46:39,642 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,643 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,645 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,647 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus
2026-01-27 01:46:39,648 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,652 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,655 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,656 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-01-27 01:46:39,658 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO
2026-01-27 01:46:39,659 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-01-27 01:46:39,661 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO
2026-01-27 01:46:39,662 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO
2026-01-27 01:46:39,664 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO
2026-01-27 01:46:39,665 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-01-27 01:46:39,667 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,668 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,670 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,672 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,673 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:46:39,676 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2026-01-27 01:46:39,677 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:46:39,679 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:46:39,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:46:39,682 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO
2026-01-27 01:46:39,684 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO
2026-01-27 01:46:39,685 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO
2026-01-27 01:46:39,687 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2026-01-27 01:46:39,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-01-27 01:46:39,689 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-01-27 01:46:39,690 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-01-27 01:46:39,692 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-01-27 01:46:39,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-01-27 01:46:39,695 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,696 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,698 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,699 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,700 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,702 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:46:39,703 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-01-27 01:46:39,704 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-01-27 01:46:39,705 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-01-27 01:46:39,707 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InfernalIO
2026-01-27 01:46:39,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:46:39,710 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:46:39,711 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:46:39,712 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:46:39,714 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast
2026-01-27 01:46:39,715 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-01-27 01:46:39,716 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-01-27 01:46:39,717 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-01-27 01:46:39,719 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-01-27 01:46:39,721 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-01-27 01:46:39,722 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo
2026-01-27 01:46:39,724 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo
2026-01-27 01:46:39,725 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo
2026-01-27 01:46:39,726 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt
2026-01-27 01:46:39,727 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt
2026-01-27 01:46:39,729 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt
2026-01-27 01:46:39,730 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,732 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:39,733 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP
2026-01-27 01:46:39,734 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,735 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,736 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,737 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,739 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,740 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,741 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-01-27 01:46:39,742 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene
2026-01-27 01:46:39,743 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniGene
2026-01-27 01:46:39,745 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs
2026-01-27 01:46:39,746 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,748 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,749 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar
2026-01-27 01:46:39,750 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar
2026-01-27 01:46:39,751 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar
2026-01-27 01:46:39,753 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,754 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,755 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,757 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,758 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,759 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,760 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,762 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,763 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,764 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,765 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-01-27 01:46:39,767 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing
2026-01-27 01:46:39,768 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-01-27 01:46:39,769 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-01-27 01:46:39,770 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-01-27 01:46:39,772 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction
2026-01-27 01:46:39,773 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-01-27 01:46:39,774 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-01-27 01:46:39,776 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-01-27 01:46:39,780 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-01-27 01:46:39,783 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG
2026-01-27 01:46:39,784 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG
2026-01-27 01:46:39,786 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2026-01-27 01:46:39,787 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-01-27 01:46:39,789 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-01-27 01:46:39,790 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-01-27 01:46:39,792 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG
2026-01-27 01:46:39,794 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme
2026-01-27 01:46:39,795 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Enzyme
2026-01-27 01:46:39,797 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene
2026-01-27 01:46:39,799 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Gene
2026-01-27 01:46:39,800 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map
2026-01-27 01:46:39,802 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Map
2026-01-27 01:46:39,803 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound
2026-01-27 01:46:39,804 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Compound
2026-01-27 01:46:39,806 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype
2026-01-27 01:46:39,807 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-01-27 01:46:39,809 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-01-27 01:46:39,810 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-01-27 01:46:39,812 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo
2026-01-27 01:46:39,813 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,814 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,816 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,817 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,819 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,820 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,821 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2026-01-27 01:46:39,823 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,824 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,825 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,826 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,827 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,829 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,832 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-01-27 01:46:39,833 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,836 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,840 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,842 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,845 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-01-27 01:46:39,846 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign
2026-01-27 01:46:39,848 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-01-27 01:46:39,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-01-27 01:46:39,850 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-01-27 01:46:39,852 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM
2026-01-27 01:46:39,853 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM
2026-01-27 01:46:39,855 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS
2026-01-27 01:46:39,856 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/TogoWS
2026-01-27 01:46:39,858 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2026-01-27 01:46:39,859 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,862 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,863 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,864 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,866 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-01-27 01:46:39,869 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster
2026-01-27 01:46:39,870 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-01-27 01:46:39,871 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-01-27 01:46:39,873 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-01-27 01:46:39,874 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-01-27 01:46:39,877 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-01-27 01:46:39,879 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet
2026-01-27 01:46:39,880 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Alphabet
2026-01-27 01:46:39,881 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt
2026-01-27 01:46:39,882 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt
2026-01-27 01:46:39,884 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt
2026-01-27 01:46:39,885 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy
2026-01-27 01:46:39,886 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,888 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,889 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,890 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,891 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,892 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-01-27 01:46:39,894 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO
2026-01-27 01:46:39,895 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,897 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,898 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,899 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,901 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,903 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,904 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,905 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,906 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,908 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,909 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,910 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,912 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,913 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,914 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,915 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,917 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,918 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,919 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,921 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,922 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,923 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,924 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,926 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,927 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-01-27 01:46:39,929 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass
2026-01-27 01:46:39,930 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Compass
2026-01-27 01:46:39,932 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen
2026-01-27 01:46:39,933 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen
2026-01-27 01:46:39,935 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2026-01-27 01:46:39,936 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-01-27 01:46:39,937 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-01-27 01:46:39,938 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-01-27 01:46:39,940 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez
2026-01-27 01:46:39,941 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez
2026-01-27 01:46:39,942 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez
2026-01-27 01:46:39,944 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs
2026-01-27 01:46:39,945 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-01-27 01:46:39,947 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-01-27 01:46:39,948 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-01-27 01:46:39,951 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2026-01-27 01:46:39,952 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,953 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,954 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,955 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,957 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,958 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,959 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,961 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,962 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,963 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,964 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,965 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,967 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,968 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,970 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,971 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,972 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,974 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,975 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,977 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,978 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,979 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,980 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,982 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,983 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,984 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,985 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,986 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,987 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,988 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,990 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,991 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,992 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,994 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,995 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,996 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,997 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:39,999 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,000 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,001 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,003 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,005 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,007 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,008 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,009 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,010 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,011 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,014 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,015 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,016 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,017 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,020 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,021 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,023 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,024 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,025 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,026 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,028 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,030 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,032 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,033 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,035 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,036 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,037 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,038 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,039 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,040 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,041 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,042 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,044 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,045 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,046 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,047 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,049 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,050 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,051 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,052 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,053 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,054 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,056 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,057 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,058 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,059 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,061 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,062 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,063 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,064 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,065 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,067 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,069 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,070 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,072 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,074 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,077 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,078 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,079 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,081 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,083 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,084 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,085 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,087 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,091 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,092 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,094 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,095 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,098 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,099 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,101 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,102 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,103 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,106 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,109 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,113 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,114 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,115 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,117 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,118 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,119 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,121 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,123 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,124 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,126 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,127 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,128 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,129 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,130 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,132 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,135 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,136 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,137 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,140 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,142 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,144 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,145 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,152 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,153 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,154 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,166 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,168 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,170 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:46:40,202 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,203 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,205 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,206 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,208 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,209 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,211 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,212 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,214 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,216 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,217 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,221 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,222 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,224 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,231 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,232 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,234 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,235 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,238 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,244 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,247 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,251 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,253 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,256 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,261 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,263 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,267 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,268 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,269 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,275 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,278 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,280 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,281 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,288 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,289 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,293 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,297 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,298 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,303 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,305 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,307 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,309 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-01-27 01:46:40,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:40,312 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway
2026-01-27 01:46:40,313 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway
2026-01-27 01:46:40,315 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2026-01-27 01:46:40,316 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-01-27 01:46:40,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-01-27 01:46:40,318 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-01-27 01:46:40,320 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:40,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-01-27 01:46:40,323 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB
2026-01-27 01:46:40,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,325 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,326 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,328 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,330 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,331 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,334 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,336 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,337 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,341 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,343 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,344 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,345 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-01-27 01:46:40,347 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
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2026-01-27 01:46:41,627 wheel INFO adding 'BioSQL/py.typed'
2026-01-27 01:46:41,629 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE'
2026-01-27 01:46:41,630 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst'
2026-01-27 01:46:41,631 wheel INFO adding 'biopython-1.86.dist-info/METADATA'
2026-01-27 01:46:41,633 wheel INFO adding 'biopython-1.86.dist-info/WHEEL'
2026-01-27 01:46:41,633 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt'
2026-01-27 01:46:41,644 wheel INFO adding 'biopython-1.86.dist-info/RECORD'
2026-01-27 01:46:41,657 root INFO removing build/bdist.linux-riscv64/wheel
2026-01-27 01:46:41,744 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_riscv64.whl
biopython-1.86-cp312-cp312-linux_riscv64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.12
>>> py3-biopython-pyc*: Package size: 5.9 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-riscv64.so.1
>>> py3-biopython*: Package size: 10.7 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.86-r0.apk
>>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:46:56 +0000 elapsed time 0h 1m 42s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r31.trigger
OK: 361.7 MiB in 103 packages
>>> py3-biopython: Updating the community/riscv64 repository index...
>>> py3-biopython: Signing the index...