>>> py3-biopython: Building community/py3-biopython 1.87-r0 (using abuild 3.17.0_rc2-r0) started Tue, 12 May 2026 01:00:44 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.5.2-r1) ( 3/31) Installing gdbm (1.26-r0) ( 4/31) Installing xz-libs (5.8.3-r0) ( 5/31) Installing mpdecimal (4.0.1-r0) ( 6/31) Installing libpanelw (6.6_p20260502-r0) ( 7/31) Installing readline (8.3.3-r1) ( 8/31) Installing sqlite-libs (3.53.1-r0) ( 9/31) Installing python3 (3.14.3-r0) (10/31) Installing python3-pycache-pyc0 (3.14.3-r0) (11/31) Installing pyc (3.14.3-r0) (12/31) Installing py3-numpy-pyc (2.4.4-r0) (13/31) Installing python3-pyc (3.14.3-r0) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.4.4-r0) (16/31) Installing py3-numpy-tests (2.4.4-r0) (17/31) Installing py3-installer (1.0.0-r0) (18/31) Installing py3-installer-pyc (1.0.0-r0) (19/31) Installing py3-gpep517 (19-r2) (20/31) Installing py3-gpep517-pyc (19-r2) (21/31) Installing py3-parsing (3.3.2-r1) (22/31) Installing py3-parsing-pyc (3.3.2-r1) (23/31) Installing py3-packaging (26.2-r0) (24/31) Installing py3-packaging-pyc (26.2-r0) (25/31) Installing py3-setuptools (82.0.1-r1) (26/31) Installing py3-setuptools-pyc (82.0.1-r1) (27/31) Installing py3-wheel (0.47.0-r0) (28/31) Installing py3-wheel-pyc (0.47.0-r0) (29/31) Installing py3-numpy-dev (2.4.4-r0) (30/31) Installing python3-dev (3.14.3-r0) (31/31) Installing .makedepends-py3-biopython (20260512.010049) Executing busybox-1.37.0-r31.trigger OK: 759.5 MiB in 135 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.87.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/edge/biopython-1.87.tar.gz.part' biopython-1.87.tar.g 40% |************ | 7791k 0:00:01 ETA biopython-1.87.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/edge/biopython-1.87.tar.gz.part' saved /var/cache/distfiles/edge/biopython-1.87.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.87.tar.gz /var/cache/distfiles/edge/biopython-1.87.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.87.tar.gz... 2026-05-12 01:01:06,188 gpep517 INFO Building wheel via backend setuptools.build_meta /usr/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases. config = read_configuration(filepath, True, ignore_option_errors, dist) 2026-05-12 01:01:06,542 root INFO running bdist_wheel 2026-05-12 01:01:06,628 root INFO running build 2026-05-12 01:01:06,629 root INFO running build_py 2026-05-12 01:01:06,651 root INFO creating build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,653 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,657 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,662 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,665 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,668 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,671 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,674 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,676 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:06,679 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-12 01:01:06,681 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-12 01:01:06,683 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy 2026-05-12 01:01:06,686 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,688 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,690 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,693 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,695 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,698 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,702 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,704 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,706 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,708 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,711 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,713 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,715 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,718 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,720 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,722 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,725 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,727 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,729 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,732 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,734 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,737 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,739 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,741 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,744 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:06,746 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-12 01:01:06,748 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-12 01:01:06,752 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,753 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,755 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,758 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,760 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,762 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,764 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,767 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,769 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,772 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,774 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,776 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO 2026-05-12 01:01:06,779 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Alphabet 2026-05-12 01:01:06,780 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Alphabet 2026-05-12 01:01:06,783 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,784 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,786 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,789 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,792 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,794 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast 2026-05-12 01:01:06,798 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/CAPS 2026-05-12 01:01:06,799 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/CAPS 2026-05-12 01:01:06,802 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:01:06,803 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:01:06,806 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-12 01:01:06,807 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-12 01:01:06,810 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-12 01:01:06,813 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign 2026-05-12 01:01:06,816 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Compass 2026-05-12 01:01:06,817 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Compass 2026-05-12 01:01:06,820 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-12 01:01:06,821 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-12 01:01:06,824 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-12 01:01:06,826 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-12 01:01:06,829 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data 2026-05-12 01:01:06,832 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-12 01:01:06,833 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-12 01:01:06,835 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-12 01:01:06,837 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss 2026-05-12 01:01:06,840 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-12 01:01:06,841 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-12 01:01:06,844 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez 2026-05-12 01:01:06,850 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,851 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,854 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,856 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,858 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,860 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,862 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy 2026-05-12 01:01:06,865 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-12 01:01:06,867 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-12 01:01:06,869 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-12 01:01:06,873 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-12 01:01:06,875 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank 2026-05-12 01:01:06,878 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-12 01:01:06,879 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-12 01:01:06,881 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo 2026-05-12 01:01:06,884 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,885 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,888 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,890 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,892 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,894 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,897 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,899 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics 2026-05-12 01:01:06,902 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,903 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,906 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,908 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,910 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,912 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,914 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,917 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,920 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,923 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,925 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,927 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,929 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram 2026-05-12 01:01:06,932 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/HMM 2026-05-12 01:01:06,934 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/HMM 2026-05-12 01:01:06,936 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-12 01:01:06,938 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-12 01:01:06,940 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG 2026-05-12 01:01:06,943 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound 2026-05-12 01:01:06,944 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound 2026-05-12 01:01:06,947 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme 2026-05-12 01:01:06,948 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme 2026-05-12 01:01:06,952 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene 2026-05-12 01:01:06,954 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene 2026-05-12 01:01:06,956 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map 2026-05-12 01:01:06,958 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map 2026-05-12 01:01:06,960 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-12 01:01:06,962 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-12 01:01:06,964 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-12 01:01:06,966 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML 2026-05-12 01:01:06,969 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Medline 2026-05-12 01:01:06,970 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Medline 2026-05-12 01:01:06,973 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,974 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,977 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,979 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,983 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,986 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,989 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,991 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,993 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,996 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:06,998 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:07,000 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:07,003 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-12 01:01:07,004 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-12 01:01:07,007 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar 2026-05-12 01:01:07,010 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,011 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,013 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,016 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,019 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,021 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:07,024 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-12 01:01:07,025 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-12 01:01:07,028 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-12 01:01:07,030 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR 2026-05-12 01:01:07,033 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway 2026-05-12 01:01:07,034 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway 2026-05-12 01:01:07,037 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-12 01:01:07,038 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-12 01:01:07,040 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-12 01:01:07,042 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep 2026-05-12 01:01:07,047 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,048 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,050 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,053 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,056 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,058 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,061 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,064 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,066 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,068 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,070 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,073 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,075 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,077 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,079 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,082 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,084 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,086 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,088 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,091 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,093 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,095 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,098 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,100 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,102 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,105 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,107 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,109 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,112 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,114 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,116 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,118 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,121 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,123 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,126 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,128 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,130 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,132 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,136 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,139 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,141 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,143 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:07,146 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-12 01:01:07,147 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-12 01:01:07,149 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-12 01:01:07,151 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf 2026-05-12 01:01:07,154 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-12 01:01:07,155 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-12 01:01:07,157 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-12 01:01:07,160 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype 2026-05-12 01:01:07,162 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen 2026-05-12 01:01:07,163 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen 2026-05-12 01:01:07,166 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-12 01:01:07,167 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-12 01:01:07,170 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-12 01:01:07,172 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop 2026-05-12 01:01:07,175 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-12 01:01:07,176 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-12 01:01:07,178 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-12 01:01:07,181 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-12 01:01:07,188 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction 2026-05-12 01:01:07,192 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,193 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,196 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,198 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,200 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,203 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,205 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,207 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP 2026-05-12 01:01:07,210 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,211 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,214 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,216 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,219 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,221 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO 2026-05-12 01:01:07,224 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,226 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,228 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,230 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,232 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,235 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model 2026-05-12 01:01:07,238 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-12 01:01:07,239 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-12 01:01:07,242 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-12 01:01:07,244 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO 2026-05-12 01:01:07,247 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-12 01:01:07,249 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-12 01:01:07,251 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-05-12 01:01:07,254 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,255 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,258 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,260 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,262 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,265 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,267 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO 2026-05-12 01:01:07,270 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-12 01:01:07,271 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-12 01:01:07,274 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-12 01:01:07,276 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-12 01:01:07,279 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO 2026-05-12 01:01:07,282 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,283 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,285 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,288 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,290 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,293 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO 2026-05-12 01:01:07,295 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-12 01:01:07,297 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-12 01:01:07,299 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO 2026-05-12 01:01:07,303 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,304 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,307 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,309 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,312 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,314 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,317 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,320 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,322 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,325 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,328 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,330 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,333 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,335 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,338 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,341 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,343 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,345 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,348 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,350 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,353 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,355 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,358 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,360 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:07,364 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,365 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,368 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,370 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,372 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,375 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,377 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,380 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils 2026-05-12 01:01:07,382 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-12 01:01:07,384 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-12 01:01:07,386 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-12 01:01:07,388 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing 2026-05-12 01:01:07,391 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer 2026-05-12 01:01:07,392 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer 2026-05-12 01:01:07,395 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-12 01:01:07,396 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-12 01:01:07,399 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt 2026-05-12 01:01:07,402 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/TogoWS 2026-05-12 01:01:07,403 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/TogoWS 2026-05-12 01:01:07,406 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,408 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,410 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,412 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,416 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,418 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,420 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,423 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,425 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,427 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,430 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,432 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,434 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,438 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,440 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,443 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,445 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo 2026-05-12 01:01:07,448 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,450 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,452 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,454 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,456 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,458 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,461 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,463 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,466 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,468 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML 2026-05-12 01:01:07,471 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniGene 2026-05-12 01:01:07,472 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniGene 2026-05-12 01:01:07,475 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-12 01:01:07,477 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-12 01:01:07,479 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt 2026-05-12 01:01:07,482 root INFO creating build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,484 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,486 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,489 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,491 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,493 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:07,496 root INFO running egg_info 2026-05-12 01:01:07,515 root INFO writing biopython.egg-info/PKG-INFO 2026-05-12 01:01:07,519 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-05-12 01:01:07,522 root INFO writing requirements to biopython.egg-info/requires.txt 2026-05-12 01:01:07,523 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-05-12 01:01:07,659 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-05-12 01:01:07,999 root INFO reading manifest template 'MANIFEST.in' 2026-05-12 01:01:08,575 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-05-12 01:01:08,602 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-05-12 01:01:08,614 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-05-12 01:01:08,626 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-05-12 01:01:08,638 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-05-12 01:01:08,650 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-05-12 01:01:08,688 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-05-12 01:01:08,689 root INFO adding license file 'LICENSE.rst' 2026-05-12 01:01:08,873 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' 2026-05-12 01:01:09,015 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:09,018 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-314/Bio 2026-05-12 01:01:09,020 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,023 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,026 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,028 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,034 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,036 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-12 01:01:09,039 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-12 01:01:09,041 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,043 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,046 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,048 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,051 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,053 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,056 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,058 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,061 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,063 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,065 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,068 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,070 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,072 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,075 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,077 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,080 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,082 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,084 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,087 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,090 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,092 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,095 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,097 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,099 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,102 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,104 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,106 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,108 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,111 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,114 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data 2026-05-12 01:01:09,116 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:01:09,120 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:01:09,122 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:01:09,125 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,127 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,129 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,132 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,134 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,137 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,139 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,141 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,146 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,148 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,151 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,153 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,156 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,159 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,161 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,163 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,165 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,168 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,170 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,172 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,175 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,177 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,180 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,183 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,185 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,188 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,191 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,193 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,197 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,200 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,202 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,205 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,211 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,214 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,217 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,220 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,224 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,227 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,230 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,232 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,235 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,238 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,240 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,243 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,245 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,248 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,250 root INFO copying 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,272 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,275 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,277 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,279 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,282 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,285 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,287 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,290 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,292 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,294 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,296 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,299 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,301 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,304 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,306 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,308 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,311 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,314 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,316 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,318 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,321 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,323 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,326 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,328 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,331 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,333 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,335 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,338 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,341 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,343 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,345 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,348 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,350 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,353 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,355 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,357 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,360 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,362 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,364 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,367 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,369 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,372 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,374 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,376 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,378 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,381 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,383 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,385 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,388 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,390 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,393 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,395 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,397 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,400 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,402 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,404 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,407 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,409 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,412 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,414 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,417 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,419 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,421 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,424 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,426 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,428 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,430 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,433 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,435 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,437 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,439 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,442 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,444 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,446 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,449 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,451 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,453 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,456 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,458 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,461 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,463 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,465 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,467 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,469 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,472 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,474 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,476 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,479 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,481 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,483 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copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,788 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,791 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,793 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,796 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,798 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,801 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,803 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,824 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,827 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,829 root INFO copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,832 root INFO copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,835 root INFO copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,837 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,840 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,843 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,845 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,847 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,850 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs 2026-05-12 01:01:09,852 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-12 01:01:09,853 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-12 01:01:09,856 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-12 01:01:09,858 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs 2026-05-12 01:01:09,861 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:01:09,863 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:01:09,866 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:09,869 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:09,871 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:01:09,874 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:01:09,877 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-314/BioSQL 2026-05-12 01:01:09,924 root INFO running build_ext 2026-05-12 01:01:09,937 root INFO building 'Bio.Align._aligncore' extension 2026-05-12 01:01:09,939 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align 2026-05-12 01:01:09,941 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o 2026-05-12 01:01:12,181 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so 2026-05-12 01:01:12,252 root INFO building 'Bio.Align._alignmentcounts' extension 2026-05-12 01:01:12,254 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o 2026-05-12 01:01:19,157 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so 2026-05-12 01:01:19,232 root INFO building 'Bio.Align._codonaligner' extension 2026-05-12 01:01:19,233 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o 2026-05-12 01:01:24,193 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so 2026-05-12 01:01:24,254 root INFO building 'Bio.Align._pairwisealigner' extension 2026-05-12 01:01:24,256 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o 2026-05-12 01:02:12,790 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:12,948 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-05-12 01:02:12,950 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices 2026-05-12 01:02:12,952 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o 2026-05-12 01:02:14,592 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:14,662 root INFO building 'Bio.cpairwise2' extension 2026-05-12 01:02:14,664 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o 2026-05-12 01:02:18,154 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:18,225 root INFO building 'Bio.Nexus.cnexus' extension 2026-05-12 01:02:18,227 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Nexus 2026-05-12 01:02:18,229 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o 2026-05-12 01:02:19,425 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:19,493 root INFO building 'Bio.motifs._pwm' extension 2026-05-12 01:02:19,495 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/motifs 2026-05-12 01:02:19,496 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o 2026-05-12 01:02:20,830 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:20,896 root INFO building 'Bio.Cluster._cluster' extension 2026-05-12 01:02:20,898 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Cluster 2026-05-12 01:02:20,900 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-05-12 01:02:40,520 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-05-12 01:02:44,531 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:44,588 root INFO building 'Bio.PDB.ccealign' extension 2026-05-12 01:02:44,589 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/PDB 2026-05-12 01:02:44,590 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o 2026-05-12 01:02:46,453 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:46,492 root INFO building 'Bio.PDB.kdtrees' extension 2026-05-12 01:02:46,494 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o 2026-05-12 01:02:48,649 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:48,690 root INFO building 'Bio.PDB._bcif_helper' extension 2026-05-12 01:02:48,691 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o 2026-05-12 01:02:49,445 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:49,483 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-05-12 01:02:49,484 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/SeqIO 2026-05-12 01:02:49,485 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o 2026-05-12 01:02:50,460 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so 2026-05-12 01:02:50,516 root INFO installing to build/bdist.linux-riscv64/wheel 2026-05-12 01:02:50,516 root INFO running install 2026-05-12 01:02:50,555 root INFO running install_lib 2026-05-12 01:02:50,565 root INFO creating build/bdist.linux-riscv64/wheel 2026-05-12 01:02:50,566 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2026-05-12 01:02:50,567 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,569 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,570 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,571 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,573 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,574 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/./BioSQL 2026-05-12 01:02:50,576 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2026-05-12 01:02:50,577 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2026-05-12 01:02:50,578 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2026-05-12 01:02:50,579 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy 2026-05-12 01:02:50,581 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,583 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2026-05-12 01:02:50,584 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Medline 2026-05-12 01:02:50,586 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2026-05-12 01:02:50,587 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-12 01:02:50,588 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-12 01:02:50,591 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-12 01:02:50,592 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank 2026-05-12 01:02:50,594 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2026-05-12 01:02:50,595 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-12 01:02:50,596 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-12 01:02:50,598 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-12 01:02:50,599 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data 2026-05-12 01:02:50,601 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2026-05-12 01:02:50,602 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,603 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,605 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,606 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,608 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,609 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,611 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,612 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,614 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,615 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,617 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO 2026-05-12 01:02:50,618 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2026-05-12 01:02:50,619 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,621 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,622 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,623 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,625 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,627 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,628 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics 2026-05-12 01:02:50,630 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,631 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,632 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,633 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,635 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,636 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,638 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,639 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,641 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,643 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,644 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,646 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,647 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram 2026-05-12 01:02:50,649 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2026-05-12 01:02:50,650 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,652 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,653 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,655 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,657 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2026-05-12 01:02:50,658 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-12 01:02:50,659 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-12 01:02:50,661 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,662 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,663 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,664 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,666 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,667 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,668 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,669 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,671 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,672 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,673 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,675 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,676 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,677 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,679 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,680 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,681 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,682 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,684 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,685 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,686 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,687 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,689 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,690 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,691 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,693 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,694 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,696 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,697 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,698 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,700 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data 2026-05-12 01:02:50,701 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-12 01:02:50,702 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices 2026-05-12 01:02:50,704 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,705 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,707 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,709 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,711 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,713 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,716 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,718 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,719 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,721 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,722 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,724 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,725 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,727 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,729 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,730 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,731 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,733 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,734 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,736 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,738 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,739 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,741 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,743 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,745 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,747 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,748 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,750 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,752 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align 2026-05-12 01:02:50,753 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,755 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,757 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2026-05-12 01:02:50,758 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-12 01:02:50,759 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-12 01:02:50,760 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR 2026-05-12 01:02:50,762 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2026-05-12 01:02:50,763 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SVDSuperimposer 2026-05-12 01:02:50,765 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,766 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,768 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,769 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,771 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2026-05-12 01:02:50,772 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,774 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,775 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,777 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,778 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,780 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,781 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus 2026-05-12 01:02:50,783 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2026-05-12 01:02:50,784 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-12 01:02:50,786 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2026-05-12 01:02:50,787 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2026-05-12 01:02:50,788 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO 2026-05-12 01:02:50,789 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-12 01:02:50,791 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,792 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,794 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,795 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,797 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,798 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,800 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO 2026-05-12 01:02:50,801 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2026-05-12 01:02:50,802 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-12 01:02:50,804 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-12 01:02:50,805 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO 2026-05-12 01:02:50,807 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2026-05-12 01:02:50,808 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2026-05-12 01:02:50,809 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO 2026-05-12 01:02:50,811 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2026-05-12 01:02:50,812 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-12 01:02:50,813 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-12 01:02:50,814 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-12 01:02:50,816 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-12 01:02:50,818 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model 2026-05-12 01:02:50,819 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,820 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,822 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,823 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,825 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,826 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO 2026-05-12 01:02:50,828 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-12 01:02:50,829 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-12 01:02:50,831 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO 2026-05-12 01:02:50,832 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InfernalIO 2026-05-12 01:02:50,833 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-12 01:02:50,835 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-12 01:02:50,836 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-12 01:02:50,837 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO 2026-05-12 01:02:50,839 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2026-05-12 01:02:50,840 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-12 01:02:50,841 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-12 01:02:50,843 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-12 01:02:50,845 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-12 01:02:50,847 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast 2026-05-12 01:02:50,849 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2026-05-12 01:02:50,850 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2026-05-12 01:02:50,851 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo 2026-05-12 01:02:50,853 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2026-05-12 01:02:50,853 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2026-05-12 01:02:50,855 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt 2026-05-12 01:02:50,856 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/File.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,858 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/py.typed -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:50,859 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2026-05-12 01:02:50,860 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,862 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,863 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,864 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,866 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,867 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,868 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP 2026-05-12 01:02:50,870 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2026-05-12 01:02:50,871 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniGene 2026-05-12 01:02:50,873 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2026-05-12 01:02:50,873 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,875 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,877 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,878 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2026-05-12 01:02:50,879 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2026-05-12 01:02:50,881 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar 2026-05-12 01:02:50,882 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,884 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,885 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,887 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,888 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,890 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,891 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,893 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,894 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,895 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/./Bio/motifs 2026-05-12 01:02:50,897 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2026-05-12 01:02:50,898 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-12 01:02:50,899 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-12 01:02:50,900 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing 2026-05-12 01:02:50,902 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2026-05-12 01:02:50,903 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-12 01:02:50,904 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-12 01:02:50,906 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-12 01:02:50,911 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction 2026-05-12 01:02:50,914 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2026-05-12 01:02:50,914 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2026-05-12 01:02:50,916 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2026-05-12 01:02:50,917 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-12 01:02:50,919 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-12 01:02:50,920 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML 2026-05-12 01:02:50,922 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG 2026-05-12 01:02:50,924 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2026-05-12 01:02:50,925 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Enzyme 2026-05-12 01:02:50,927 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2026-05-12 01:02:50,928 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Gene 2026-05-12 01:02:50,930 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2026-05-12 01:02:50,930 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Map 2026-05-12 01:02:50,932 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2026-05-12 01:02:50,933 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Compound 2026-05-12 01:02:50,935 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2026-05-12 01:02:50,936 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-12 01:02:50,938 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-12 01:02:50,939 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype 2026-05-12 01:02:50,941 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2026-05-12 01:02:50,942 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,943 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,945 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,947 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,949 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,950 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,952 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2026-05-12 01:02:50,953 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,954 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,955 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,956 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,958 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,959 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,961 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,962 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,964 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML 2026-05-12 01:02:50,965 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,967 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,968 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,970 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,971 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,973 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,974 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,976 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,978 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,979 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo 2026-05-12 01:02:50,981 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2026-05-12 01:02:50,982 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-12 01:02:50,983 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-12 01:02:50,985 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign 2026-05-12 01:02:50,987 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2026-05-12 01:02:50,988 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM 2026-05-12 01:02:50,989 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2026-05-12 01:02:50,990 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/TogoWS 2026-05-12 01:02:50,992 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2026-05-12 01:02:50,993 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:50,994 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:50,996 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:50,997 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:50,999 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:51,000 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:51,002 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils 2026-05-12 01:02:51,004 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2026-05-12 01:02:51,004 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-12 01:02:51,006 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-12 01:02:51,008 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-12 01:02:51,009 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-12 01:02:51,012 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster 2026-05-12 01:02:51,014 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2026-05-12 01:02:51,015 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Alphabet 2026-05-12 01:02:51,017 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2026-05-12 01:02:51,018 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2026-05-12 01:02:51,019 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt 2026-05-12 01:02:51,021 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2026-05-12 01:02:51,022 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,023 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,025 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,026 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,027 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,029 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy 2026-05-12 01:02:51,030 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2026-05-12 01:02:51,031 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,033 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,035 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,036 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,038 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,040 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,041 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,043 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,044 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,046 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,048 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,050 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,051 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,052 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,054 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,056 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,057 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,059 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,061 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,062 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,064 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,065 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,066 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,068 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,069 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO 2026-05-12 01:02:51,071 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2026-05-12 01:02:51,072 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Compass 2026-05-12 01:02:51,074 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2026-05-12 01:02:51,075 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen 2026-05-12 01:02:51,077 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2026-05-12 01:02:51,077 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-12 01:02:51,079 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-12 01:02:51,080 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop 2026-05-12 01:02:51,082 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2026-05-12 01:02:51,083 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2026-05-12 01:02:51,085 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez 2026-05-12 01:02:51,087 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2026-05-12 01:02:51,088 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-12 01:02:51,089 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-12 01:02:51,090 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs 2026-05-12 01:02:51,093 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2026-05-12 01:02:51,094 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,095 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,096 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,098 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,099 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,101 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,102 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,103 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,104 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,106 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,108 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,109 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,111 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,112 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,115 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,116 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,118 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,120 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,121 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,123 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,124 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,126 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,127 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,129 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,130 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,132 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,133 root INFO 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,265 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,266 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,268 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,269 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,271 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,273 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,274 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,276 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,277 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,279 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,280 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,281 root INFO 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,292 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,293 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,294 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,296 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,297 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,299 root INFO 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build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,326 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,328 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,329 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,331 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,332 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,333 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,335 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,337 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,338 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,339 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,341 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,342 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,344 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,346 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,347 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,348 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,350 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 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build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,380 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,381 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,383 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,384 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,385 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,387 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,388 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,389 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,391 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,393 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,394 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,395 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,397 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,398 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,399 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,401 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,402 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,404 root INFO copying 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copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,414 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,416 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,417 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,419 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,420 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,422 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,423 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,425 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,426 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,428 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,430 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,431 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,433 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,434 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,436 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,437 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,438 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,440 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,441 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,442 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,443 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,445 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,446 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,448 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,449 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,451 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,452 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,454 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,455 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,457 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,458 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,460 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,461 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,462 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,464 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,465 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,467 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,468 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,470 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,471 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,473 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,475 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,476 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,478 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,479 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,481 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,482 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,484 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,485 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,487 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,488 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,489 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,491 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,493 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,494 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,495 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,497 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,498 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,500 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,501 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,502 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,504 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,506 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,507 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,509 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,510 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,511 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,513 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,514 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,516 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,517 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,518 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,520 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,521 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs 2026-05-12 01:02:51,523 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:51,525 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2026-05-12 01:02:51,526 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway 2026-05-12 01:02:51,528 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2026-05-12 01:02:51,528 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-12 01:02:51,530 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-12 01:02:51,531 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep 2026-05-12 01:02:51,533 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/./Bio 2026-05-12 01:02:51,535 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2026-05-12 01:02:51,536 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,537 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,539 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,540 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,541 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,543 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,545 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,546 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,547 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,549 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,550 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,551 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,553 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,554 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,556 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,557 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,559 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,561 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,562 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,563 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,565 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,566 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,568 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 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build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,580 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,581 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,582 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,584 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,586 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,587 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB 2026-05-12 01:02:51,589 root INFO copying 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'biopython-1.87.dist-info/METADATA' 2026-05-12 01:02:52,821 wheel INFO adding 'biopython-1.87.dist-info/WHEEL' 2026-05-12 01:02:52,821 wheel INFO adding 'biopython-1.87.dist-info/top_level.txt' 2026-05-12 01:02:52,830 wheel INFO adding 'biopython-1.87.dist-info/RECORD' 2026-05-12 01:02:52,839 root INFO removing build/bdist.linux-riscv64/wheel :18: DeprecationWarning: Invoking setup.py is deprecated and will be removed in a future release of Biopython. Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython. Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ 2026-05-12 01:02:52,918 gpep517 INFO The backend produced .dist/biopython-1.87-cp314-cp314-linux_riscv64.whl biopython-1.87-cp314-cp314-linux_riscv64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... python3~3.14 >>> py3-biopython-pyc*: Package size: 6.2 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.87-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.14 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 10.8 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.87-r0.apk >>> py3-biopython: Build complete at Tue, 12 May 2026 01:03:08 +0000 elapsed time 0h 2m 24s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... 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