>>> py3-bioframe: Building community/py3-bioframe 0.7.2-r1 (using abuild 3.13.0-r5) started Tue, 01 Oct 2024 10:27:02 +0000 >>> py3-bioframe: Checking sanity of /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/118) Installing libbz2 (1.0.8-r6) (2/118) Installing libffi (3.4.6-r0) (3/118) Installing gdbm (1.24-r0) (4/118) Installing xz-libs (5.6.2-r0) (5/118) Installing mpdecimal (4.0.0-r0) (6/118) Installing libpanelw (6.5_p20240601-r1) (7/118) Installing sqlite-libs (3.46.1-r0) (8/118) Installing python3 (3.12.6-r0) (9/118) Installing python3-pycache-pyc0 (3.12.6-r0) (10/118) Installing pyc (3.12.6-r0) (11/118) Installing py3-cairo-pyc (1.27.0-r0) (12/118) Installing py3-certifi (2024.8.30-r0) (13/118) Installing py3-certifi-pyc (2024.8.30-r0) (14/118) Installing libgfortran (14.2.0-r3) (15/118) Installing openblas (0.3.28-r0) (16/118) Installing py3-numpy (1.25.2-r1) (17/118) Installing py3-numpy-pyc (1.25.2-r1) (18/118) Installing py3-contourpy (1.3.0-r0) (19/118) Installing py3-contourpy-pyc (1.3.0-r0) (20/118) Installing py3-cycler (0.12.1-r1) (21/118) Installing py3-cycler-pyc (0.12.1-r1) (22/118) Installing py3-six (1.16.0-r9) (23/118) Installing py3-six-pyc (1.16.0-r9) (24/118) Installing py3-dateutil (2.9.0-r1) (25/118) Installing py3-dateutil-pyc (2.9.0-r1) (26/118) Installing py3-fonttools (4.53.1-r0) (27/118) Installing py3-fonttools-pyc (4.53.1-r0) (28/118) Installing py3-kiwisolver (1.4.5-r1) (29/118) Installing py3-kiwisolver-pyc (1.4.5-r1) (30/118) Installing py3-parsing (3.1.4-r0) (31/118) Installing py3-parsing-pyc (3.1.4-r0) (32/118) Installing py3-packaging (24.1-r0) (33/118) Installing py3-packaging-pyc (24.1-r0) (34/118) Installing libpng (1.6.44-r0) (35/118) Installing freetype (2.13.3-r0) (36/118) Installing libimagequant (4.2.2-r0) (37/118) Installing libjpeg-turbo (3.0.4-r0) (38/118) Installing lcms2 (2.16-r0) (39/118) Installing openjpeg (2.5.2-r0) (40/118) Installing libsharpyuv (1.4.0-r0) (41/118) Installing libwebp (1.4.0-r0) (42/118) Installing tiff (4.6.0t-r0) (43/118) Installing libwebpdemux (1.4.0-r0) (44/118) Installing libwebpmux (1.4.0-r0) (45/118) Installing libxau (1.0.11-r4) (46/118) Installing libmd (1.1.0-r0) (47/118) Installing libbsd (0.12.2-r0) (48/118) Installing libxdmcp (1.1.5-r1) (49/118) Installing libxcb (1.16.1-r0) (50/118) Installing py3-pillow (10.4.0-r0) (51/118) Installing py3-pillow-pyc (10.4.0-r0) (52/118) Installing py3-tz (2024.2-r0) (53/118) Installing py3-tz-pyc (2024.2-r0) (54/118) Installing tzdata (2024b-r1) (55/118) Installing tcl (8.6.15-r0) (56/118) Installing libx11 (1.8.10-r0) (57/118) Installing libxrender (0.9.11-r5) (58/118) Installing fontconfig (2.15.0-r1) (59/118) Installing libxft (2.3.8-r3) (60/118) 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(83/118) Installing py3-idna-pyc (3.10-r0) (84/118) Installing py3-urllib3 (1.26.20-r0) (85/118) Installing py3-urllib3-pyc (1.26.20-r0) (86/118) Installing py3-requests (2.32.3-r0) (87/118) Installing py3-requests-pyc (2.32.3-r0) (88/118) Installing py3-typing-extensions (4.12.2-r0) (89/118) Installing py3-typing-extensions-pyc (4.12.2-r0) (90/118) Installing py3-setuptools (70.3.0-r0) (91/118) Installing py3-setuptools-pyc (70.3.0-r0) (92/118) Installing py3-installer (0.7.0-r2) (93/118) Installing py3-installer-pyc (0.7.0-r2) (94/118) Installing py3-gpep517 (16-r0) (95/118) Installing py3-gpep517-pyc (16-r0) (96/118) Installing py3-editables (0.5-r2) (97/118) Installing py3-editables-pyc (0.5-r2) (98/118) Installing py3-pathspec (0.12.1-r2) (99/118) Installing py3-pathspec-pyc (0.12.1-r2) (100/118) Installing py3-pluggy (1.5.0-r0) (101/118) Installing py3-pluggy-pyc (1.5.0-r0) (102/118) Installing py3-trove-classifiers (2024.9.12-r0) (103/118) Installing py3-trove-classifiers-pyc (2024.9.12-r0) (104/118) Installing py3-hatchling (1.25.0-r0) (105/118) Installing py3-hatchling-pyc (1.25.0-r0) (106/118) Installing py3-wheel (0.43.0-r0) (107/118) Installing py3-wheel-pyc (0.43.0-r0) (108/118) Installing py3-execnet (2.1.1-r0) (109/118) Installing py3-execnet-pyc (2.1.1-r0) (110/118) Installing py3-iniconfig (2.0.0-r1) (111/118) Installing py3-iniconfig-pyc (2.0.0-r1) (112/118) Installing py3-py (1.11.0-r4) (113/118) Installing py3-py-pyc (1.11.0-r4) (114/118) Installing py3-pytest (8.3.3-r0) (115/118) Installing py3-pytest-pyc (8.3.3-r0) (116/118) Installing py3-pytest-xdist (3.6.1-r0) (117/118) Installing py3-pytest-xdist-pyc (3.6.1-r0) (118/118) Installing .makedepends-py3-bioframe (20241001.102703) Executing busybox-1.36.1-r32.trigger OK: 601 MiB in 225 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge//bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.7.2/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 224k 0 224k 0 0 175k 0 --:--:-- 0:00:01 --:--:-- 175k 100 950k 0 950k 0 0 630k 0 --:--:-- 0:00:01 --:--:-- 3185k >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge//bioframe-0.7.2.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.7.2.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/edge/bioframe-0.7.2.tar.gz... 2024-10-01 10:27:08,032 gpep517 INFO Building wheel via backend hatchling.build 2024-10-01 10:27:08,092 gpep517 INFO The backend produced .dist/bioframe-0.7.2-py2.py3-none-any.whl bioframe-0.7.2-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.7.2 configfile: pyproject.toml plugins: xdist-3.6.1 created: 8/8 workers 8 workers [68 items] .........................s...s..s................................... [100%] =============================== warnings summary =============================== tests/test_assembly_info.py: 6 warnings tests/test_resources.py: 10 warnings /usr/lib/python3.12/site-packages/pandas/core/computation/expr.py:557: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return self.const_type(node.n, self.env) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 65 passed, 3 skipped, 16 warnings in 4.99s ================== >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 32.0 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.7.2-r1.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 348.0 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.7.2-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 328.0 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.7.2-r1.apk >>> py3-bioframe: Build complete at Tue, 01 Oct 2024 10:27:15 +0000 elapsed time 0h 0m 13s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/118) Purging .makedepends-py3-bioframe (20241001.102703) (2/118) Purging py3-matplotlib-pyc (3.7.3-r2) (3/118) Purging py3-matplotlib (3.7.3-r2) (4/118) Purging py3-cairo-pyc (1.27.0-r0) (5/118) Purging py3-cairo (1.27.0-r0) (6/118) Purging py3-contourpy-pyc (1.3.0-r0) (7/118) Purging py3-contourpy (1.3.0-r0) (8/118) Purging py3-cycler-pyc (0.12.1-r1) (9/118) Purging py3-cycler (0.12.1-r1) (10/118) Purging py3-fonttools-pyc (4.53.1-r0) (11/118) Purging py3-fonttools (4.53.1-r0) (12/118) Purging py3-kiwisolver-pyc (1.4.5-r1) (13/118) Purging py3-kiwisolver (1.4.5-r1) (14/118) Purging py3-pillow-pyc (10.4.0-r0) (15/118) Purging py3-pillow (10.4.0-r0) (16/118) Purging python3-tkinter-pyc (3.12.5-r0) (17/118) Purging python3-tkinter (3.12.5-r0) (18/118) Purging py3-pandas-pyc (2.0.3-r2) (19/118) Purging py3-pandas (2.0.3-r2) (20/118) Purging py3-dateutil-pyc (2.9.0-r1) (21/118) Purging py3-dateutil (2.9.0-r1) (22/118) Purging py3-six-pyc (1.16.0-r9) (23/118) Purging py3-six (1.16.0-r9) 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openjpeg (2.5.2-r0) (95/118) Purging pixman (0.43.4-r0) (96/118) Purging qhull (2020.2-r3) (97/118) Purging sqlite-libs (3.46.1-r0) (98/118) Purging tiff (4.6.0t-r0) (99/118) Purging tk (8.6.15-r0) (100/118) Purging xz-libs (5.6.2-r0) (101/118) Purging yaml (0.2.5-r2) (102/118) Purging libxft (2.3.8-r3) (103/118) Purging fontconfig (2.15.0-r1) (104/118) Purging freetype (2.13.3-r0) (105/118) Purging libxrender (0.9.11-r5) (106/118) Purging libx11 (1.8.10-r0) (107/118) Purging libxcb (1.16.1-r0) (108/118) Purging libxdmcp (1.1.5-r1) (109/118) Purging libbsd (0.12.2-r0) (110/118) Purging libbz2 (1.0.8-r6) (111/118) Purging libjpeg-turbo (3.0.4-r0) (112/118) Purging libmd (1.1.0-r0) (113/118) Purging libpng (1.6.44-r0) (114/118) Purging libwebp (1.4.0-r0) (115/118) Purging libsharpyuv (1.4.0-r0) (116/118) Purging libxau (1.0.11-r4) (117/118) Purging tcl (8.6.15-r0) (118/118) Purging tzdata (2024b-r1) Executing busybox-1.36.1-r32.trigger OK: 368 MiB in 107 packages >>> py3-bioframe: Updating the community/s390x repository index... >>> py3-bioframe: Signing the index...