>>> py3-biopython: Building community/py3-biopython 1.86-r0 (using abuild 3.16.0-r0) started Tue, 27 Jan 2026 01:37:54 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/31) Installing libbz2 (1.0.8-r6)
( 2/31) Installing libffi (3.5.2-r0)
( 3/31) Installing gdbm (1.26-r0)
( 4/31) Installing xz-libs (5.8.2-r0)
( 5/31) Installing mpdecimal (4.0.1-r0)
( 6/31) Installing libpanelw (6.6_p20251231-r0)
( 7/31) Installing sqlite-libs (3.51.2-r1)
( 8/31) Installing python3 (3.12.12-r0)
( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0)
(10/31) Installing pyc (3.12.12-r0)
(11/31) Installing py3-numpy-pyc (2.3.5-r0)
(12/31) Installing python3-pyc (3.12.12-r0)
(13/31) Installing libgfortran (15.2.0-r2)
(14/31) Installing openblas (0.3.30-r2)
(15/31) Installing py3-numpy (2.3.5-r0)
(16/31) Installing py3-numpy-tests (2.3.5-r0)
(17/31) Installing py3-installer (0.7.0-r2)
(18/31) Installing py3-installer-pyc (0.7.0-r2)
(19/31) Installing py3-gpep517 (19-r1)
(20/31) Installing py3-gpep517-pyc (19-r1)
(21/31) Installing py3-parsing (3.3.1-r0)
(22/31) Installing py3-parsing-pyc (3.3.1-r0)
(23/31) Installing py3-packaging (25.0-r0)
(24/31) Installing py3-packaging-pyc (25.0-r0)
(25/31) Installing py3-setuptools (80.9.0-r2)
(26/31) Installing py3-setuptools-pyc (80.9.0-r2)
(27/31) Installing py3-wheel (0.46.1-r0)
(28/31) Installing py3-wheel-pyc (0.46.1-r0)
(29/31) Installing py3-numpy-dev (2.3.5-r0)
(30/31) Installing python3-dev (3.12.12-r0)
(31/31) Installing .makedepends-py3-biopython (20260127.013755)
Executing busybox-1.37.0-r31.trigger
OK: 539.3 MiB in 138 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge//biopython-1.86.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
wget: server returned error: HTTP/1.1 404 Not Found
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.86.tar.gz
Connecting to files.pythonhosted.org (151.101.64.223:443)
Connecting to files.pythonhosted.org (151.101.64.223:443)
saving to '/var/cache/distfiles/edge/biopython-1.86.tar.gz.part'
biopython-1.86.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.86.tar.gz.part' saved
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge//biopython-1.86.tar.gz
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.86.tar.gz...
2026-01-27 01:37:58,053 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2026-01-27 01:37:58,071 root INFO running bdist_wheel
2026-01-27 01:37:58,084 root INFO running build
2026-01-27 01:37:58,084 root INFO running build_py
2026-01-27 01:37:58,087 root INFO creating build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,087 root INFO copying Bio/__init__.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,087 root INFO copying Bio/Seq.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,088 root INFO copying Bio/SeqFeature.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,088 root INFO copying Bio/_utils.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,088 root INFO copying Bio/File.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,088 root INFO copying Bio/pairwise2.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,089 root INFO copying Bio/bgzf.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,089 root INFO copying Bio/SeqRecord.py -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,089 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Affy
2026-01-27 01:37:58,089 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Affy
2026-01-27 01:37:58,089 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-s390x-cpython-312/Bio/Affy
2026-01-27 01:37:58,090 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/analysis.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/phylip.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/fasta.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,090 root INFO copying Bio/Align/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/nexus.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/tabular.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/bed.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/a2m.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/sam.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,091 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/maf.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/psl.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/clustal.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/msf.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/emboss.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,092 root INFO copying Bio/Align/mauve.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/hhr.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/chain.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,093 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:37:58,094 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:37:58,094 root INFO creating build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,094 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,094 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,094 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,094 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,095 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-s390x-cpython-312/Bio/AlignIO
2026-01-27 01:37:58,096 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Alphabet
2026-01-27 01:37:58,096 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Alphabet
2026-01-27 01:37:58,096 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,096 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,096 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,096 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,097 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,097 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-s390x-cpython-312/Bio/Blast
2026-01-27 01:37:58,097 root INFO creating build/lib.linux-s390x-cpython-312/Bio/CAPS
2026-01-27 01:37:58,097 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/CAPS
2026-01-27 01:37:58,097 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:37:58,097 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:37:58,097 root INFO creating build/lib.linux-s390x-cpython-312/Bio/codonalign
2026-01-27 01:37:58,098 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-s390x-cpython-312/Bio/codonalign
2026-01-27 01:37:58,098 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/codonalign
2026-01-27 01:37:58,098 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-s390x-cpython-312/Bio/codonalign
2026-01-27 01:37:58,098 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Compass
2026-01-27 01:37:58,098 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Compass
2026-01-27 01:37:58,098 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Data
2026-01-27 01:37:58,098 root INFO copying Bio/Data/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Data
2026-01-27 01:37:58,099 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-s390x-cpython-312/Bio/Data
2026-01-27 01:37:58,099 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-s390x-cpython-312/Bio/Data
2026-01-27 01:37:58,099 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-s390x-cpython-312/Bio/Data
2026-01-27 01:37:58,099 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Emboss
2026-01-27 01:37:58,099 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Emboss
2026-01-27 01:37:58,099 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-s390x-cpython-312/Bio/Emboss
2026-01-27 01:37:58,099 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-s390x-cpython-312/Bio/Emboss
2026-01-27 01:37:58,100 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Entrez
2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Entrez
2026-01-27 01:37:58,100 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-s390x-cpython-312/Bio/Entrez
2026-01-27 01:37:58,101 root INFO creating build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,101 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-s390x-cpython-312/Bio/ExPASy
2026-01-27 01:37:58,102 root INFO creating build/lib.linux-s390x-cpython-312/Bio/GenBank
2026-01-27 01:37:58,102 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/GenBank
2026-01-27 01:37:58,102 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-s390x-cpython-312/Bio/GenBank
2026-01-27 01:37:58,102 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-s390x-cpython-312/Bio/GenBank
2026-01-27 01:37:58,102 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-s390x-cpython-312/Bio/GenBank
2026-01-27 01:37:58,102 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Geo
2026-01-27 01:37:58,102 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Geo
2026-01-27 01:37:58,103 root INFO copying Bio/Geo/Record.py -> build/lib.linux-s390x-cpython-312/Bio/Geo
2026-01-27 01:37:58,103 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,103 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,103 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,103 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,103 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,103 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,104 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,104 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics
2026-01-27 01:37:58,104 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,104 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,104 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,104 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,105 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,106 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,106 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram
2026-01-27 01:37:58,106 root INFO creating build/lib.linux-s390x-cpython-312/Bio/HMM
2026-01-27 01:37:58,106 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/HMM
2026-01-27 01:37:58,106 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG
2026-01-27 01:37:58,106 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG
2026-01-27 01:37:58,107 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG
2026-01-27 01:37:58,107 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG/Compound
2026-01-27 01:37:58,107 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/Compound
2026-01-27 01:37:58,107 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG/Enzyme
2026-01-27 01:37:58,107 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/Enzyme
2026-01-27 01:37:58,107 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG/Gene
2026-01-27 01:37:58,107 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/Gene
2026-01-27 01:37:58,108 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG/Map
2026-01-27 01:37:58,108 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/Map
2026-01-27 01:37:58,108 root INFO creating build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf
2026-01-27 01:37:58,108 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf
2026-01-27 01:37:58,108 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf
2026-01-27 01:37:58,108 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf
2026-01-27 01:37:58,108 root INFO creating build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML
2026-01-27 01:37:58,108 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML
2026-01-27 01:37:58,109 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML
2026-01-27 01:37:58,109 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML
2026-01-27 01:37:58,109 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Medline
2026-01-27 01:37:58,109 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Medline
2026-01-27 01:37:58,109 root INFO creating build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,109 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/mast.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,110 root INFO copying Bio/motifs/xms.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,111 root INFO copying Bio/motifs/meme.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,111 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,111 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,111 root INFO creating build/lib.linux-s390x-cpython-312/Bio/motifs/jaspar
2026-01-27 01:37:58,111 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/motifs/jaspar
2026-01-27 01:37:58,111 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-s390x-cpython-312/Bio/motifs/jaspar
2026-01-27 01:37:58,112 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,112 root INFO creating build/lib.linux-s390x-cpython-312/Bio/NMR
2026-01-27 01:37:58,113 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/NMR
2026-01-27 01:37:58,113 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-s390x-cpython-312/Bio/NMR
2026-01-27 01:37:58,113 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-s390x-cpython-312/Bio/NMR
2026-01-27 01:37:58,113 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Pathway
2026-01-27 01:37:58,113 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Pathway
2026-01-27 01:37:58,113 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep
2026-01-27 01:37:58,113 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep
2026-01-27 01:37:58,114 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep
2026-01-27 01:37:58,114 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep
2026-01-27 01:37:58,114 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,114 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,114 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,115 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,116 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,117 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,118 root INFO copying Bio/PDB/Model.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,119 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,120 root INFO creating build/lib.linux-s390x-cpython-312/Bio/phenotype
2026-01-27 01:37:58,120 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/phenotype
2026-01-27 01:37:58,121 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-s390x-cpython-312/Bio/phenotype
2026-01-27 01:37:58,121 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-s390x-cpython-312/Bio/phenotype
2026-01-27 01:37:58,121 root INFO creating build/lib.linux-s390x-cpython-312/Bio/PopGen
2026-01-27 01:37:58,121 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/PopGen
2026-01-27 01:37:58,121 root INFO creating build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:37:58,121 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:37:58,121 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:37:58,122 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop
2026-01-27 01:37:58,122 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Restriction
2026-01-27 01:37:58,122 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Restriction
2026-01-27 01:37:58,122 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-s390x-cpython-312/Bio/Restriction
2026-01-27 01:37:58,122 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-s390x-cpython-312/Bio/Restriction
2026-01-27 01:37:58,122 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-s390x-cpython-312/Bio/Restriction
2026-01-27 01:37:58,123 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,123 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,123 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,123 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,123 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,124 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,124 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,124 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-s390x-cpython-312/Bio/SCOP
2026-01-27 01:37:58,124 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,124 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,124 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO
2026-01-27 01:37:58,125 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,125 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,126 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,126 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model
2026-01-27 01:37:58,126 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:37:58,126 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:37:58,126 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:37:58,126 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO
2026-01-27 01:37:58,127 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:37:58,127 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:37:58,127 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HHsuiteIO
2026-01-27 01:37:58,127 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,127 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,127 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,127 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO
2026-01-27 01:37:58,128 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:37:58,128 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO
2026-01-27 01:37:58,129 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,129 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO
2026-01-27 01:37:58,130 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:37:58,130 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:37:58,130 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-s390x-cpython-312/Bio/SearchIO/InterproscanIO
2026-01-27 01:37:58,130 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,130 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,130 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,131 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,132 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,133 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,134 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,134 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,134 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,134 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,134 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,134 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,135 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,135 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,135 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,135 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-s390x-cpython-312/Bio/SeqUtils
2026-01-27 01:37:58,135 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Sequencing
2026-01-27 01:37:58,135 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Sequencing
2026-01-27 01:37:58,135 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-s390x-cpython-312/Bio/Sequencing
2026-01-27 01:37:58,136 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-s390x-cpython-312/Bio/Sequencing
2026-01-27 01:37:58,136 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SVDSuperimposer
2026-01-27 01:37:58,136 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SVDSuperimposer
2026-01-27 01:37:58,136 root INFO creating build/lib.linux-s390x-cpython-312/Bio/SwissProt
2026-01-27 01:37:58,136 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/SwissProt
2026-01-27 01:37:58,136 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-s390x-cpython-312/Bio/SwissProt
2026-01-27 01:37:58,136 root INFO creating build/lib.linux-s390x-cpython-312/Bio/TogoWS
2026-01-27 01:37:58,137 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/TogoWS
2026-01-27 01:37:58,137 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,137 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,137 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,137 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,137 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,138 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo
2026-01-27 01:37:58,139 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,140 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,141 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,141 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML
2026-01-27 01:37:58,141 root INFO creating build/lib.linux-s390x-cpython-312/Bio/UniGene
2026-01-27 01:37:58,141 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/UniGene
2026-01-27 01:37:58,141 root INFO creating build/lib.linux-s390x-cpython-312/Bio/UniProt
2026-01-27 01:37:58,141 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-s390x-cpython-312/Bio/UniProt
2026-01-27 01:37:58,141 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-s390x-cpython-312/Bio/UniProt
2026-01-27 01:37:58,142 root INFO creating build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,142 root INFO copying BioSQL/__init__.py -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,142 root INFO copying BioSQL/Loader.py -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,142 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,142 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,142 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,143 root INFO running egg_info
2026-01-27 01:37:58,145 root INFO writing biopython.egg-info/PKG-INFO
2026-01-27 01:37:58,145 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-01-27 01:37:58,145 root INFO writing requirements to biopython.egg-info/requires.txt
2026-01-27 01:37:58,145 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-01-27 01:37:58,157 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-01-27 01:37:58,193 root INFO reading manifest template 'MANIFEST.in'
2026-01-27 01:37:58,243 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-01-27 01:37:58,246 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-01-27 01:37:58,249 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-01-27 01:37:58,251 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-01-27 01:37:58,253 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-01-27 01:37:58,256 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-01-27 01:37:58,260 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-01-27 01:37:58,260 root INFO adding license file 'LICENSE'
2026-01-27 01:37:58,260 root INFO adding license file 'LICENSE.rst'
2026-01-27 01:37:58,287 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2026-01-27 01:37:58,308 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,308 root INFO copying Bio/py.typed -> build/lib.linux-s390x-cpython-312/Bio
2026-01-27 01:37:58,308 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,308 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,308 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,309 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,309 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,309 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:37:58,309 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:37:58,309 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,309 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,310 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,311 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,312 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,313 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,314 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data
2026-01-27 01:37:58,314 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:37:58,314 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:37:58,314 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:37:58,314 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,314 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,315 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,316 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,317 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,318 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,319 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,319 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,319 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,319 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,319 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,320 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,321 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,321 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:37:58,342 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,342 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:37:58,342 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,342 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,342 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,343 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
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2026-01-27 01:37:58,343 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,343 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,343 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,343 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,344 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,345 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,346 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,347 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,348 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,349 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,350 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,351 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,352 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,353 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,354 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,355 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,356 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,357 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,358 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs
2026-01-27 01:37:58,358 root INFO creating build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:37:58,358 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:37:58,358 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:37:58,358 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs
2026-01-27 01:37:58,358 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:37:58,358 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:37:58,358 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,359 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,359 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:37:58,359 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:37:58,359 root INFO copying BioSQL/py.typed -> build/lib.linux-s390x-cpython-312/BioSQL
2026-01-27 01:37:58,364 root INFO running build_ext
2026-01-27 01:37:58,365 root INFO building 'Bio.Align._aligncore' extension
2026-01-27 01:37:58,366 root INFO creating build/temp.linux-s390x-cpython-312/Bio/Align
2026-01-27 01:37:58,366 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-s390x-cpython-312/Bio/Align/_aligncore.o
2026-01-27 01:37:58,547 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Align/_aligncore.cpython-312-s390x-linux-musl.so
2026-01-27 01:37:58,553 root INFO building 'Bio.Align._alignmentcounts' extension
2026-01-27 01:37:58,553 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-s390x-cpython-312/Bio/Align/_alignmentcounts.o
2026-01-27 01:37:59,074 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Align/_alignmentcounts.cpython-312-s390x-linux-musl.so
2026-01-27 01:37:59,080 root INFO building 'Bio.Align._codonaligner' extension
2026-01-27 01:37:59,080 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-s390x-cpython-312/Bio/Align/_codonaligner.o
2026-01-27 01:37:59,439 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Align/_codonaligner.cpython-312-s390x-linux-musl.so
2026-01-27 01:37:59,445 root INFO building 'Bio.Align._pairwisealigner' extension
2026-01-27 01:37:59,446 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.o
2026-01-27 01:38:04,521 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:04,529 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-01-27 01:38:04,530 root INFO creating build/temp.linux-s390x-cpython-312/Bio/Align/substitution_matrices
2026-01-27 01:38:04,530 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.o
2026-01-27 01:38:04,652 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:04,658 root INFO building 'Bio.cpairwise2' extension
2026-01-27 01:38:04,658 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-s390x-cpython-312/Bio/cpairwise2module.o
2026-01-27 01:38:04,873 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/cpairwise2.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:04,879 root INFO building 'Bio.Nexus.cnexus' extension
2026-01-27 01:38:04,879 root INFO creating build/temp.linux-s390x-cpython-312/Bio/Nexus
2026-01-27 01:38:04,879 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-s390x-cpython-312/Bio/Nexus/cnexus.o
2026-01-27 01:38:04,966 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Nexus/cnexus.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:04,972 root INFO building 'Bio.motifs._pwm' extension
2026-01-27 01:38:04,972 root INFO creating build/temp.linux-s390x-cpython-312/Bio/motifs
2026-01-27 01:38:04,972 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-s390x-cpython-312/Bio/motifs/_pwm.o
2026-01-27 01:38:05,073 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/motifs/_pwm.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:05,078 root INFO building 'Bio.Cluster._cluster' extension
2026-01-27 01:38:05,079 root INFO creating build/temp.linux-s390x-cpython-312/Bio/Cluster
2026-01-27 01:38:05,079 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-s390x-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-01-27 01:38:06,731 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-s390x-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-01-27 01:38:07,218 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/Cluster/cluster.o build/temp.linux-s390x-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/Cluster/_cluster.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:07,224 root INFO building 'Bio.PDB.ccealign' extension
2026-01-27 01:38:07,224 root INFO creating build/temp.linux-s390x-cpython-312/Bio/PDB
2026-01-27 01:38:07,224 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-s390x-cpython-312/Bio/PDB/ccealignmodule.o
2026-01-27 01:38:07,460 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/PDB/ccealign.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:07,466 root INFO building 'Bio.PDB.kdtrees' extension
2026-01-27 01:38:07,466 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-s390x-cpython-312/Bio/PDB/kdtrees.o
2026-01-27 01:38:07,749 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/PDB/kdtrees.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:07,755 root INFO building 'Bio.PDB._bcif_helper' extension
2026-01-27 01:38:07,755 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-s390x-cpython-312/Bio/PDB/bcifhelpermodule.o
2026-01-27 01:38:07,857 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/PDB/_bcif_helper.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:07,863 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-01-27 01:38:07,863 root INFO creating build/temp.linux-s390x-cpython-312/Bio/SeqIO
2026-01-27 01:38:07,863 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-s390x-cpython-312/Bio/SeqIO/_twoBitIO.o
2026-01-27 01:38:07,997 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-s390x-linux-musl.so
2026-01-27 01:38:08,008 root INFO installing to build/bdist.linux-s390x/wheel
2026-01-27 01:38:08,008 root INFO running install
2026-01-27 01:38:08,017 root INFO running install_lib
2026-01-27 01:38:08,020 root INFO creating build/bdist.linux-s390x/wheel
2026-01-27 01:38:08,020 root INFO creating build/bdist.linux-s390x/wheel/BioSQL
2026-01-27 01:38:08,020 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/__init__.py -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,020 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/Loader.py -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,020 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,020 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/py.typed -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-s390x/wheel/./BioSQL
2026-01-27 01:38:08,021 root INFO creating build/bdist.linux-s390x/wheel/Bio
2026-01-27 01:38:08,021 root INFO creating build/bdist.linux-s390x/wheel/Bio/Restriction
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Restriction
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-s390x/wheel/./Bio/Restriction
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-s390x/wheel/./Bio/Restriction
2026-01-27 01:38:08,021 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-s390x/wheel/./Bio/Restriction
2026-01-27 01:38:08,022 root INFO creating build/bdist.linux-s390x/wheel/Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,022 root INFO copying build/lib.linux-s390x-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-s390x/wheel/./Bio/ExPASy
2026-01-27 01:38:08,023 root INFO creating build/bdist.linux-s390x/wheel/Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,023 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/_pwm.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO creating build/bdist.linux-s390x/wheel/Bio/motifs/jaspar
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/motifs/jaspar
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-s390x/wheel/./Bio/motifs/jaspar
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-s390x/wheel/./Bio/motifs
2026-01-27 01:38:08,024 root INFO creating build/bdist.linux-s390x/wheel/Bio/UniGene
2026-01-27 01:38:08,024 root INFO copying build/lib.linux-s390x-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/UniGene
2026-01-27 01:38:08,025 root INFO creating build/bdist.linux-s390x/wheel/Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/ccealign.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,025 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO creating build/bdist.linux-s390x/wheel/Bio/PDB/mmtf
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/PDB/mmtf
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-s390x/wheel/./Bio/PDB/mmtf
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-s390x/wheel/./Bio/PDB/mmtf
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,026 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/kdtrees.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,027 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,028 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/_bcif_helper.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,029 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-s390x/wheel/./Bio/PDB
2026-01-27 01:38:08,030 root INFO creating build/bdist.linux-s390x/wheel/Bio/SeqUtils
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,030 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-s390x/wheel/./Bio/SeqUtils
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/__init__.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,031 root INFO creating build/bdist.linux-s390x/wheel/Bio/Phylo
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,031 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,032 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,033 root INFO creating build/bdist.linux-s390x/wheel/Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,033 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo/PAML
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-s390x/wheel/./Bio/Phylo
2026-01-27 01:38:08,034 root INFO creating build/bdist.linux-s390x/wheel/Bio/GenBank
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/GenBank
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-s390x/wheel/./Bio/GenBank
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-s390x/wheel/./Bio/GenBank
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-s390x/wheel/./Bio/GenBank
2026-01-27 01:38:08,034 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG
2026-01-27 01:38:08,034 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG
2026-01-27 01:38:08,035 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG/Compound
2026-01-27 01:38:08,035 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/Compound
2026-01-27 01:38:08,035 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG/Gene
2026-01-27 01:38:08,035 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/Gene
2026-01-27 01:38:08,035 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG/KGML
2026-01-27 01:38:08,035 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/KGML
2026-01-27 01:38:08,035 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/KGML
2026-01-27 01:38:08,035 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/KGML
2026-01-27 01:38:08,035 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG/Enzyme
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/Enzyme
2026-01-27 01:38:08,036 root INFO creating build/bdist.linux-s390x/wheel/Bio/KEGG/Map
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG/Map
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-s390x/wheel/./Bio/KEGG
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Seq.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,036 root INFO copying build/lib.linux-s390x-cpython-312/Bio/_utils.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,036 root INFO creating build/bdist.linux-s390x/wheel/Bio/Compass
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Compass
2026-01-27 01:38:08,037 root INFO creating build/bdist.linux-s390x/wheel/Bio/PopGen
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/PopGen
2026-01-27 01:38:08,037 root INFO creating build/bdist.linux-s390x/wheel/Bio/PopGen/GenePop
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/PopGen/GenePop
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-s390x/wheel/./Bio/PopGen/GenePop
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-s390x/wheel/./Bio/PopGen/GenePop
2026-01-27 01:38:08,037 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO
2026-01-27 01:38:08,037 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO
2026-01-27 01:38:08,038 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/HHsuiteIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HHsuiteIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HHsuiteIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO
2026-01-27 01:38:08,038 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/InterproscanIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InterproscanIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InterproscanIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO
2026-01-27 01:38:08,038 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO
2026-01-27 01:38:08,039 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/_model
2026-01-27 01:38:08,039 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/BlastIO
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:38:08,039 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/BlastIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO
2026-01-27 01:38:08,040 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/HmmerIO
2026-01-27 01:38:08,040 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/InfernalIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/InfernalIO
2026-01-27 01:38:08,041 root INFO creating build/bdist.linux-s390x/wheel/Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,041 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-s390x/wheel/./Bio/SearchIO/ExonerateIO
2026-01-27 01:38:08,042 root INFO creating build/bdist.linux-s390x/wheel/Bio/Entrez
2026-01-27 01:38:08,042 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Entrez
2026-01-27 01:38:08,042 root INFO creating build/bdist.linux-s390x/wheel/Bio/Entrez/XSDs
2026-01-27 01:38:08,042 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/XSDs
2026-01-27 01:38:08,042 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/XSDs
2026-01-27 01:38:08,042 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/XSDs
2026-01-27 01:38:08,042 root INFO creating build/bdist.linux-s390x/wheel/Bio/Entrez/DTDs
2026-01-27 01:38:08,042 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,043 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,044 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,045 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,046 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,047 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,048 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,049 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,050 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,051 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,052 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,053 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,054 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,055 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,056 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,057 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,058 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,059 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,060 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,061 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,062 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,063 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,064 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,065 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,066 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
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2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,067 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,068 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,069 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,070 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-s390x/wheel/./Bio/Entrez/DTDs
2026-01-27 01:38:08,071 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-s390x/wheel/./Bio/Entrez
2026-01-27 01:38:08,072 root INFO creating build/bdist.linux-s390x/wheel/Bio/Alphabet
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Alphabet
2026-01-27 01:38:08,072 root INFO creating build/bdist.linux-s390x/wheel/Bio/Emboss
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Emboss
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-s390x/wheel/./Bio/Emboss
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-s390x/wheel/./Bio/Emboss
2026-01-27 01:38:08,072 root INFO creating build/bdist.linux-s390x/wheel/Bio/SwissProt
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SwissProt
2026-01-27 01:38:08,072 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-s390x/wheel/./Bio/SwissProt
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/cpairwise2.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/py.typed -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,073 root INFO creating build/bdist.linux-s390x/wheel/Bio/codonalign
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-s390x/wheel/./Bio/codonalign
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/codonalign
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-s390x/wheel/./Bio/codonalign
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/File.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,073 root INFO creating build/bdist.linux-s390x/wheel/Bio/Data
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Data
2026-01-27 01:38:08,073 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-s390x/wheel/./Bio/Data
2026-01-27 01:38:08,074 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-s390x/wheel/./Bio/Data
2026-01-27 01:38:08,074 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-s390x/wheel/./Bio/Data
2026-01-27 01:38:08,074 root INFO creating build/bdist.linux-s390x/wheel/Bio/Medline
2026-01-27 01:38:08,074 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Medline
2026-01-27 01:38:08,074 root INFO creating build/bdist.linux-s390x/wheel/Bio/HMM
2026-01-27 01:38:08,074 root INFO copying build/lib.linux-s390x-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/HMM
2026-01-27 01:38:08,074 root INFO creating build/bdist.linux-s390x/wheel/Bio/Nexus
2026-01-27 01:38:08,074 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/cnexus.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-s390x/wheel/./Bio/Nexus
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,075 root INFO creating build/bdist.linux-s390x/wheel/Bio/Pathway
2026-01-27 01:38:08,075 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Pathway
2026-01-27 01:38:08,075 root INFO creating build/bdist.linux-s390x/wheel/Bio/Pathway/Rep
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Pathway/Rep
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-s390x/wheel/./Bio/Pathway/Rep
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-s390x/wheel/./Bio/Pathway/Rep
2026-01-27 01:38:08,076 root INFO creating build/bdist.linux-s390x/wheel/Bio/Cluster
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Cluster
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-s390x/wheel/./Bio/Cluster
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-s390x/wheel/./Bio/Cluster
2026-01-27 01:38:08,076 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Cluster/_cluster.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Cluster
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-s390x/wheel/./Bio/Cluster
2026-01-27 01:38:08,077 root INFO creating build/bdist.linux-s390x/wheel/Bio/Blast
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Blast
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-s390x/wheel/./Bio/Blast
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-s390x/wheel/./Bio/Blast
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-s390x/wheel/./Bio/Blast
2026-01-27 01:38:08,077 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-s390x/wheel/./Bio/Blast
2026-01-27 01:38:08,077 root INFO creating build/bdist.linux-s390x/wheel/Bio/CAPS
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/CAPS
2026-01-27 01:38:08,078 root INFO creating build/bdist.linux-s390x/wheel/Bio/SVDSuperimposer
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SVDSuperimposer
2026-01-27 01:38:08,078 root INFO creating build/bdist.linux-s390x/wheel/Bio/Align
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_alignmentcounts.c -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,078 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_aligncore.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.h -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/bed.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,079 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/sam.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_alignmentcounts.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/maf.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/psl.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_codonaligner.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,080 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/msf.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_pairwisealigner.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,081 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,082 root INFO creating build/bdist.linux-s390x/wheel/Bio/Align/substitution_matrices
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:38:08,082 root INFO creating build/bdist.linux-s390x/wheel/Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,082 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,083 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,084 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices/data
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/substitution_matrices/_arraycore.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/Align/substitution_matrices
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/chain.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-s390x/wheel/./Bio/Align
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/pairwise2.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,085 root INFO creating build/bdist.linux-s390x/wheel/Bio/Graphics
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,085 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,086 root INFO creating build/bdist.linux-s390x/wheel/Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,086 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics/GenomeDiagram
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,087 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-s390x/wheel/./Bio/Graphics
2026-01-27 01:38:08,087 root INFO creating build/bdist.linux-s390x/wheel/Bio/Affy
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Affy
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-s390x/wheel/./Bio/Affy
2026-01-27 01:38:08,088 root INFO creating build/bdist.linux-s390x/wheel/Bio/NMR
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/NMR
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-s390x/wheel/./Bio/NMR
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-s390x/wheel/./Bio/NMR
2026-01-27 01:38:08,088 root INFO creating build/bdist.linux-s390x/wheel/Bio/SCOP
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,088 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-s390x/wheel/./Bio/SCOP
2026-01-27 01:38:08,089 root INFO creating build/bdist.linux-s390x/wheel/Bio/Geo
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Geo
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-s390x/wheel/./Bio/Geo
2026-01-27 01:38:08,089 root INFO creating build/bdist.linux-s390x/wheel/Bio/AlignIO
2026-01-27 01:38:08,089 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,090 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-s390x/wheel/./Bio/AlignIO
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/bgzf.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,091 root INFO creating build/bdist.linux-s390x/wheel/Bio/Sequencing
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/Sequencing
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-s390x/wheel/./Bio/Sequencing
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-s390x/wheel/./Bio/Sequencing
2026-01-27 01:38:08,091 root INFO creating build/bdist.linux-s390x/wheel/Bio/phenotype
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/phenotype
2026-01-27 01:38:08,091 root INFO copying build/lib.linux-s390x-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-s390x/wheel/./Bio/phenotype
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-s390x/wheel/./Bio/phenotype
2026-01-27 01:38:08,092 root INFO creating build/bdist.linux-s390x/wheel/Bio/TogoWS
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/TogoWS
2026-01-27 01:38:08,092 root INFO creating build/bdist.linux-s390x/wheel/Bio/UniProt
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/UniProt
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-s390x/wheel/./Bio/UniProt
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-s390x/wheel/./Bio
2026-01-27 01:38:08,092 root INFO creating build/bdist.linux-s390x/wheel/Bio/SeqIO
2026-01-27 01:38:08,092 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,093 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,094 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,095 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,095 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,095 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
2026-01-27 01:38:08,095 root INFO copying build/lib.linux-s390x-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-s390x/wheel/./Bio/SeqIO
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2026-01-27 01:38:08,169 wheel INFO adding 'Bio/PDB/PDBList.py'
2026-01-27 01:38:08,169 wheel INFO adding 'Bio/PDB/PDBMLParser.py'
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2026-01-27 01:38:08,169 wheel INFO adding 'Bio/PDB/PICIO.py'
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2026-01-27 01:38:08,170 wheel INFO adding 'Bio/PDB/SASA.py'
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2026-01-27 01:38:08,170 wheel INFO adding 'Bio/PDB/Structure.py'
2026-01-27 01:38:08,170 wheel INFO adding 'Bio/PDB/StructureAlignment.py'
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2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/Superimposer.py'
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2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/_bcif_helper.cpython-312-s390x-linux-musl.so'
2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/alphafold_db.py'
2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/bcifhelpermodule.c'
2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/binary_cif.py'
2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/ccealign.cpython-312-s390x-linux-musl.so'
2026-01-27 01:38:08,171 wheel INFO adding 'Bio/PDB/ccealignmodule.c'
2026-01-27 01:38:08,172 wheel INFO adding 'Bio/PDB/cealign.py'
2026-01-27 01:38:08,172 wheel INFO adding 'Bio/PDB/ic_data.py'
2026-01-27 01:38:08,172 wheel INFO adding 'Bio/PDB/ic_rebuild.py'
2026-01-27 01:38:08,172 wheel INFO adding 'Bio/PDB/internal_coords.py'
2026-01-27 01:38:08,173 wheel INFO adding 'Bio/PDB/kdtrees.c'
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2026-01-27 01:38:08,173 wheel INFO adding 'Bio/PDB/mmcifio.py'
2026-01-27 01:38:08,173 wheel INFO adding 'Bio/PDB/parse_pdb_header.py'
2026-01-27 01:38:08,173 wheel INFO adding 'Bio/PDB/qcprot.py'
2026-01-27 01:38:08,173 wheel INFO adding 'Bio/PDB/vectors.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/PDB/mmtf/DefaultParser.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/PDB/mmtf/__init__.py'
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2026-01-27 01:38:08,174 wheel INFO adding 'Bio/Pathway/__init__.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/Pathway/Rep/Graph.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/Pathway/Rep/MultiGraph.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/Pathway/Rep/__init__.py'
2026-01-27 01:38:08,174 wheel INFO adding 'Bio/Phylo/BaseTree.py'
2026-01-27 01:38:08,175 wheel INFO adding 'Bio/Phylo/CDAO.py'
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2026-01-27 01:38:08,175 wheel INFO adding 'Bio/Phylo/Consensus.py'
2026-01-27 01:38:08,175 wheel INFO adding 'Bio/Phylo/NeXML.py'
2026-01-27 01:38:08,175 wheel INFO adding 'Bio/Phylo/NeXMLIO.py'
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2026-01-27 01:38:08,175 wheel INFO adding 'Bio/Phylo/NexusIO.py'
2026-01-27 01:38:08,176 wheel INFO adding 'Bio/Phylo/PhyloXML.py'
2026-01-27 01:38:08,176 wheel INFO adding 'Bio/Phylo/PhyloXMLIO.py'
2026-01-27 01:38:08,176 wheel INFO adding 'Bio/Phylo/TreeConstruction.py'
2026-01-27 01:38:08,176 wheel INFO adding 'Bio/Phylo/__init__.py'
2026-01-27 01:38:08,176 wheel INFO adding 'Bio/Phylo/_cdao_owl.py'
2026-01-27 01:38:08,177 wheel INFO adding 'Bio/Phylo/_io.py'
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2026-01-27 01:38:08,177 wheel INFO adding 'Bio/Phylo/PAML/__init__.py'
2026-01-27 01:38:08,177 wheel INFO adding 'Bio/Phylo/PAML/_paml.py'
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2026-01-27 01:38:08,179 wheel INFO adding 'Bio/Restriction/PrintFormat.py'
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2026-01-27 01:38:08,180 wheel INFO adding 'Bio/SCOP/Cla.py'
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2026-01-27 01:38:08,181 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py'
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2026-01-27 01:38:08,182 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py'
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2026-01-27 01:38:08,185 wheel INFO adding 'Bio/SearchIO/_model/hit.py'
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2026-01-27 01:38:08,186 wheel INFO adding 'Bio/SeqIO/AbiIO.py'
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2026-01-27 01:38:08,187 wheel INFO adding 'Bio/SeqIO/NibIO.py'
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2026-01-27 01:38:08,187 wheel INFO adding 'Bio/SeqIO/PirIO.py'
2026-01-27 01:38:08,188 wheel INFO adding 'Bio/SeqIO/QualityIO.py'
2026-01-27 01:38:08,188 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py'
2026-01-27 01:38:08,188 wheel INFO adding 'Bio/SeqIO/SffIO.py'
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2026-01-27 01:38:08,189 wheel INFO adding 'Bio/SeqIO/XdnaIO.py'
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2026-01-27 01:38:08,191 wheel INFO adding 'Bio/SeqUtils/lcc.py'
2026-01-27 01:38:08,191 wheel INFO adding 'Bio/Sequencing/Ace.py'
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2026-01-27 01:38:08,191 wheel INFO adding 'Bio/Sequencing/__init__.py'
2026-01-27 01:38:08,191 wheel INFO adding 'Bio/SwissProt/KeyWList.py'
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2026-01-27 01:38:08,191 wheel INFO adding 'Bio/TogoWS/__init__.py'
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2026-01-27 01:38:08,192 wheel INFO adding 'Bio/UniProt/GOA.py'
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2026-01-27 01:38:08,192 wheel INFO adding 'Bio/codonalign/__init__.py'
2026-01-27 01:38:08,192 wheel INFO adding 'Bio/codonalign/codonalignment.py'
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2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/__init__.py'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/_pwm.c'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-s390x-linux-musl.so'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/alignace.py'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/clusterbuster.py'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/mast.py'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/matrix.py'
2026-01-27 01:38:08,193 wheel INFO adding 'Bio/motifs/meme.py'
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2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/pfm.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/thresholds.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/transfac.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/xms.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2026-01-27 01:38:08,194 wheel INFO adding 'Bio/phenotype/__init__.py'
2026-01-27 01:38:08,195 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2026-01-27 01:38:08,195 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2026-01-27 01:38:08,195 wheel INFO adding 'BioSQL/BioSeq.py'
2026-01-27 01:38:08,195 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2026-01-27 01:38:08,195 wheel INFO adding 'BioSQL/DBUtils.py'
2026-01-27 01:38:08,196 wheel INFO adding 'BioSQL/Loader.py'
2026-01-27 01:38:08,196 wheel INFO adding 'BioSQL/__init__.py'
2026-01-27 01:38:08,196 wheel INFO adding 'BioSQL/py.typed'
2026-01-27 01:38:08,196 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE'
2026-01-27 01:38:08,196 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst'
2026-01-27 01:38:08,196 wheel INFO adding 'biopython-1.86.dist-info/METADATA'
2026-01-27 01:38:08,196 wheel INFO adding 'biopython-1.86.dist-info/WHEEL'
2026-01-27 01:38:08,196 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt'
2026-01-27 01:38:08,198 wheel INFO adding 'biopython-1.86.dist-info/RECORD'
2026-01-27 01:38:08,200 root INFO removing build/bdist.linux-s390x/wheel
2026-01-27 01:38:08,209 gpep517 INFO The backend produced .dist/biopython-1.86-cp312-cp312-linux_s390x.whl
biopython-1.86-cp312-cp312-linux_s390x.whl
>>> py3-biopython: Entering fakeroot...
libfakeroot internal error: payload not recognized!
>>> py3-biopython-pyc*: Running split function pyc...
libfakeroot internal error: payload not recognized!
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.12
>>> py3-biopython-pyc*: Package size: 5.9 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-s390x.so.1
>>> py3-biopython*: Package size: 10.8 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.86-r0.apk
>>> py3-biopython: Build complete at Tue, 27 Jan 2026 01:38:10 +0000 elapsed time 0h 0m 16s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r31.trigger
OK: 386.7 MiB in 107 packages
>>> py3-biopython: Updating the community/s390x repository index...
>>> py3-biopython: Signing the index...