>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.12.0-r5) started Sat, 13 Apr 2024 19:12:16 +0000 >>> py3-kallisto: Checking sanity of /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/62) Installing libffi (3.4.6-r0) (2/62) Installing gdbm (1.23-r1) (3/62) Installing mpdecimal (4.0.0-r0) (4/62) Installing libpanelw (6.4_p20240330-r0) (5/62) Installing readline (8.2.10-r0) (6/62) Installing sqlite-libs (3.45.2-r0) (7/62) Installing python3 (3.12.3-r0) (8/62) Installing python3-pycache-pyc0 (3.12.3-r0) (9/62) Installing pyc (3.12.3-r0) (10/62) Installing python3-pyc (3.12.3-r0) (11/62) Installing py3-click (8.1.7-r2) (12/62) Installing py3-click-pyc (8.1.7-r2) (13/62) Installing libquadmath (13.2.1_git20240309-r0) (14/62) Installing libgfortran (13.2.1_git20240309-r0) (15/62) Installing openblas (0.3.27-r0) (16/62) Installing py3-numpy (1.25.2-r1) (17/62) Installing py3-numpy-pyc (1.25.2-r1) (18/62) Installing py3-parsing (3.1.2-r1) (19/62) Installing py3-parsing-pyc (3.1.2-r1) (20/62) Installing py3-packaging (24.0-r1) (21/62) Installing py3-packaging-pyc (24.0-r1) (22/62) Installing py3-platformdirs (4.2.0-r1) (23/62) Installing py3-platformdirs-pyc (4.2.0-r1) (24/62) Installing py3-certifi (2024.2.2-r1) (25/62) Installing py3-certifi-pyc (2024.2.2-r1) (26/62) Installing py3-charset-normalizer (3.3.2-r1) (27/62) Installing py3-charset-normalizer-pyc (3.3.2-r1) (28/62) Installing py3-idna (3.6-r1) (29/62) Installing py3-idna-pyc (3.6-r1) (30/62) Installing py3-urllib3 (1.26.18-r1) (31/62) Installing py3-urllib3-pyc (1.26.18-r1) (32/62) Installing py3-requests (2.31.0-r2) (33/62) Installing py3-requests-pyc (2.31.0-r2) (34/62) Installing py3-pooch (1.8.1-r1) (35/62) Installing py3-pooch-pyc (1.8.1-r1) (36/62) Installing py3-scipy (1.11.4-r1) (37/62) Installing py3-scipy-pyc (1.11.4-r1) (38/62) Installing py3-fastjsonschema (2.19.1-r2) (39/62) Installing py3-fastjsonschema-pyc (2.19.1-r2) (40/62) Installing py3-lark-parser (1.1.9-r1) (41/62) Installing py3-lark-parser-pyc (1.1.9-r1) (42/62) Installing py3-poetry-core (1.8.1-r1) (43/62) Installing py3-poetry-core-pyc (1.8.1-r1) (44/62) Installing py3-installer (0.7.0-r2) (45/62) Installing py3-installer-pyc (0.7.0-r2) (46/62) Installing py3-gpep517 (15-r2) (47/62) Installing py3-gpep517-pyc (15-r2) (48/62) Installing py3-wheel (0.42.0-r1) (49/62) Installing py3-wheel-pyc (0.42.0-r1) (50/62) Installing py3-iniconfig (2.0.0-r1) (51/62) Installing py3-iniconfig-pyc (2.0.0-r1) (52/62) Installing py3-pluggy (1.4.0-r1) (53/62) Installing py3-pluggy-pyc (1.4.0-r1) (54/62) Installing py3-py (1.11.0-r3) (55/62) Installing py3-py-pyc (1.11.0-r3) (56/62) Installing py3-pytest (8.1.1-r1) (57/62) Installing py3-pytest-pyc (8.1.1-r1) (58/62) Installing py3-setuptools (69.2.0-r2) (59/62) Installing py3-setuptools-pyc (69.2.0-r2) (60/62) Installing py3-pytest-runner (6.0.1-r1) (61/62) Installing py3-pytest-runner-pyc (6.0.1-r1) (62/62) Installing .makedepends-py3-kallisto (20240413.191219) Executing busybox-1.36.1-r25.trigger OK: 556 MiB in 175 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/edge/kallisto-1.0.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 158k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 158k 100 158k 0 0 699k 0 --:--:-- --:--:-- --:--:-- 700k >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/edge/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/edge/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2024-04-13 19:12:21,953 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2024-04-13 19:12:22,236 poetry.core.masonry.builders.wheel INFO Building wheel fatal: not a git repository (or any of the parent directories): .git 2024-04-13 19:12:22,286 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2024-04-13 19:12:22,287 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.1, pluggy-1.4.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 3.54s ============================== >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto-pyc*: Package size: 608.0 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 500.0 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Sat, 13 Apr 2024 19:12:28 +0000 elapsed time 0h 0m 12s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/62) Purging .makedepends-py3-kallisto (20240413.191219) (2/62) Purging py3-click-pyc (8.1.7-r2) (3/62) Purging py3-click (8.1.7-r2) (4/62) Purging py3-scipy-pyc (1.11.4-r1) (5/62) Purging py3-scipy (1.11.4-r1) (6/62) Purging py3-pooch-pyc (1.8.1-r1) (7/62) Purging py3-pooch (1.8.1-r1) (8/62) Purging py3-platformdirs-pyc (4.2.0-r1) (9/62) Purging py3-platformdirs (4.2.0-r1) (10/62) Purging py3-requests-pyc (2.31.0-r2) (11/62) Purging py3-requests (2.31.0-r2) (12/62) Purging py3-certifi-pyc (2024.2.2-r1) (13/62) Purging py3-certifi (2024.2.2-r1) (14/62) Purging py3-charset-normalizer-pyc (3.3.2-r1) (15/62) Purging py3-charset-normalizer (3.3.2-r1) (16/62) Purging py3-idna-pyc (3.6-r1) (17/62) Purging py3-idna (3.6-r1) (18/62) Purging py3-urllib3-pyc (1.26.18-r1) (19/62) Purging py3-urllib3 (1.26.18-r1) (20/62) Purging py3-numpy-pyc (1.25.2-r1) (21/62) Purging py3-numpy (1.25.2-r1) (22/62) Purging openblas (0.3.27-r0) (23/62) Purging py3-poetry-core-pyc (1.8.1-r1) (24/62) Purging py3-poetry-core (1.8.1-r1) (25/62) Purging py3-fastjsonschema-pyc (2.19.1-r2) (26/62) Purging py3-fastjsonschema (2.19.1-r2) (27/62) Purging py3-lark-parser-pyc (1.1.9-r1) (28/62) Purging py3-lark-parser (1.1.9-r1) (29/62) Purging py3-gpep517-pyc (15-r2) (30/62) Purging py3-gpep517 (15-r2) (31/62) Purging py3-installer-pyc (0.7.0-r2) (32/62) Purging py3-installer (0.7.0-r2) (33/62) Purging py3-wheel-pyc (0.42.0-r1) (34/62) Purging py3-wheel (0.42.0-r1) (35/62) Purging py3-pytest-runner-pyc (6.0.1-r1) (36/62) Purging py3-pytest-runner (6.0.1-r1) (37/62) Purging py3-pytest-pyc (8.1.1-r1) (38/62) Purging py3-pytest (8.1.1-r1) (39/62) Purging py3-iniconfig-pyc (2.0.0-r1) (40/62) Purging py3-iniconfig (2.0.0-r1) (41/62) Purging py3-pluggy-pyc (1.4.0-r1) (42/62) Purging py3-pluggy (1.4.0-r1) (43/62) Purging py3-py-pyc (1.11.0-r3) (44/62) Purging py3-py (1.11.0-r3) (45/62) Purging py3-setuptools-pyc (69.2.0-r2) (46/62) Purging py3-setuptools (69.2.0-r2) (47/62) Purging py3-packaging-pyc (24.0-r1) (48/62) Purging py3-packaging (24.0-r1) (49/62) Purging py3-parsing-pyc (3.1.2-r1) (50/62) Purging py3-parsing (3.1.2-r1) (51/62) Purging libgfortran (13.2.1_git20240309-r0) (52/62) Purging libquadmath (13.2.1_git20240309-r0) (53/62) Purging python3-pyc (3.12.3-r0) (54/62) Purging python3-pycache-pyc0 (3.12.3-r0) (55/62) Purging pyc (3.12.3-r0) (56/62) Purging python3 (3.12.3-r0) (57/62) Purging gdbm (1.23-r1) (58/62) Purging libffi (3.4.6-r0) (59/62) Purging libpanelw (6.4_p20240330-r0) (60/62) Purging mpdecimal (4.0.0-r0) (61/62) Purging readline (8.2.10-r0) (62/62) Purging sqlite-libs (3.45.2-r0) Executing busybox-1.36.1-r25.trigger OK: 379 MiB in 113 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...