>>> py3-bioframe: Building community/py3-bioframe 0.7.2-r0 (using abuild 3.13.0-r3) started Sat, 22 Jun 2024 20:31:08 +0000 >>> py3-bioframe: Checking sanity of /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/120) Installing libbz2 (1.0.8-r6) (2/120) Installing libffi (3.4.6-r0) (3/120) Installing gdbm (1.23-r1) (4/120) Installing xz-libs (5.6.2-r0) (5/120) Installing mpdecimal (4.0.0-r0) (6/120) Installing libpanelw (6.4_p20240420-r0) (7/120) Installing readline (8.2.10-r0) (8/120) Installing sqlite-libs (3.46.0-r0) (9/120) Installing python3 (3.12.3-r1) (10/120) Installing python3-pycache-pyc0 (3.12.3-r1) (11/120) Installing pyc (3.12.3-r1) (12/120) Installing py3-cairo-pyc (1.26.0-r1) (13/120) Installing py3-certifi (2024.2.2-r1) 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py3-packaging-pyc (24.1-r0) (36/120) Installing libpng (1.6.43-r0) (37/120) Installing freetype (2.13.2-r0) (38/120) Installing libimagequant (4.2.2-r0) (39/120) Installing libjpeg-turbo (3.0.3-r0) (40/120) Installing lcms2 (2.16-r0) (41/120) Installing openjpeg (2.5.2-r0) (42/120) Installing libsharpyuv (1.3.2-r0) (43/120) Installing libwebp (1.3.2-r0) (44/120) Installing tiff (4.6.0t-r0) (45/120) Installing libwebpdemux (1.3.2-r0) (46/120) Installing libwebpmux (1.3.2-r0) (47/120) Installing libxau (1.0.11-r4) (48/120) Installing libmd (1.1.0-r0) (49/120) Installing libbsd (0.12.2-r0) (50/120) Installing libxdmcp (1.1.5-r1) (51/120) Installing libxcb (1.16.1-r0) (52/120) Installing py3-pillow (10.3.0-r2) (53/120) Installing py3-pillow-pyc (10.3.0-r2) (54/120) Installing py3-tz (2024.1-r1) (55/120) Installing py3-tz-pyc (2024.1-r1) (56/120) Installing tzdata (2024a-r1) (57/120) Installing tcl (8.6.14-r1) (58/120) Installing libx11 (1.8.9-r1) (59/120) Installing libxrender (0.9.11-r5) 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Installing py3-charset-normalizer-pyc (3.3.2-r1) (84/120) Installing py3-idna (3.7-r0) (85/120) Installing py3-idna-pyc (3.7-r0) (86/120) Installing py3-urllib3 (1.26.18-r1) (87/120) Installing py3-urllib3-pyc (1.26.18-r1) (88/120) Installing py3-requests (2.32.3-r0) (89/120) Installing py3-requests-pyc (2.32.3-r0) (90/120) Installing py3-typing-extensions (4.11.0-r1) (91/120) Installing py3-typing-extensions-pyc (4.11.0-r1) (92/120) Installing py3-setuptools (70.1.0-r0) (93/120) Installing py3-setuptools-pyc (70.1.0-r0) (94/120) Installing py3-installer (0.7.0-r2) (95/120) Installing py3-installer-pyc (0.7.0-r2) (96/120) Installing py3-gpep517 (16-r0) (97/120) Installing py3-gpep517-pyc (16-r0) (98/120) Installing py3-editables (0.5-r2) (99/120) Installing py3-editables-pyc (0.5-r2) (100/120) Installing py3-pathspec (0.12.1-r2) (101/120) Installing py3-pathspec-pyc (0.12.1-r2) (102/120) Installing py3-pluggy (1.5.0-r0) (103/120) Installing py3-pluggy-pyc (1.5.0-r0) (104/120) Installing py3-trove-classifiers (2024.5.17-r0) (105/120) Installing py3-trove-classifiers-pyc (2024.5.17-r0) (106/120) Installing py3-hatchling (1.24.2-r0) (107/120) Installing py3-hatchling-pyc (1.24.2-r0) (108/120) Installing py3-wheel (0.42.0-r1) (109/120) Installing py3-wheel-pyc (0.42.0-r1) (110/120) Installing py3-execnet (2.1.1-r0) (111/120) Installing py3-execnet-pyc (2.1.1-r0) (112/120) Installing py3-iniconfig (2.0.0-r1) (113/120) Installing py3-iniconfig-pyc (2.0.0-r1) (114/120) Installing py3-py (1.11.0-r3) (115/120) Installing py3-py-pyc (1.11.0-r3) (116/120) Installing py3-pytest (8.2.2-r0) (117/120) Installing py3-pytest-pyc (8.2.2-r0) (118/120) Installing py3-pytest-xdist (3.6.1-r0) (119/120) Installing py3-pytest-xdist-pyc (3.6.1-r0) (120/120) Installing .makedepends-py3-bioframe (20240622.203110) Executing busybox-1.36.1-r31.trigger OK: 630 MiB in 227 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.7.2/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 406k 0 406k 0 0 570k 0 --:--:-- --:--:-- --:--:-- 570k 100 950k 0 950k 0 0 1135k 0 --:--:-- --:--:-- --:--:-- 4418k >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.7.2.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/edge/bioframe-0.7.2.tar.gz... 2024-06-22 20:31:15,499 gpep517 INFO Building wheel via backend hatchling.build 2024-06-22 20:31:15,697 gpep517 INFO The backend produced .dist/bioframe-0.7.2-py2.py3-none-any.whl bioframe-0.7.2-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.7.2 configfile: pyproject.toml plugins: xdist-3.6.1 created: 32/32 workers 32 workers [68 items] ss.......s.......................................................... [100%] =============================== warnings summary =============================== tests/test_assembly_info.py: 6 warnings tests/test_resources.py: 10 warnings /usr/lib/python3.12/site-packages/pandas/core/computation/expr.py:557: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return self.const_type(node.n, self.env) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 65 passed, 3 skipped, 16 warnings in 10.09s ================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:98: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8/test_safe_get_no_perms0 : [Errno 39] Directory not empty: 'test_safe_get_no_perms0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:98: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8/test_safe_set_no_perms0 : [Errno 39] Directory not empty: 'test_safe_set_no_perms0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:98: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8/test_safe_delete_no_perms0 : [Errno 39] Directory not empty: 'test_safe_delete_no_perms0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:98: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8/test_rmtree_errorhandler_rerai0 : [Errno 39] Directory not empty: 'test_rmtree_errorhandler_rerai0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:98: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-2f80d4c6-d881-47be-8dbc-1e32391415e8' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 348.0 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.7.2-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 328.0 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.7.2-r0.apk >>> py3-bioframe: Build complete at Sat, 22 Jun 2024 20:31:28 +0000 elapsed time 0h 0m 20s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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Executing busybox-1.36.1-r31.trigger OK: 378 MiB in 107 packages >>> py3-bioframe: Updating the community/x86_64 repository index... >>> py3-bioframe: Signing the index...