>>> py3-bioframe: Building community/py3-bioframe 0.7.2-r1 (using abuild 3.13.0-r5) started Tue, 01 Oct 2024 10:27:00 +0000 >>> py3-bioframe: Checking sanity of /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/117) Installing libffi (3.4.6-r0) (2/117) Installing gdbm (1.24-r0) (3/117) Installing mpdecimal (4.0.0-r0) (4/117) Installing libpanelw (6.5_p20240601-r1) (5/117) Installing sqlite-libs (3.46.1-r0) (6/117) Installing python3 (3.12.6-r0) (7/117) Installing python3-pycache-pyc0 (3.12.6-r0) (8/117) Installing pyc (3.12.6-r0) (9/117) Installing py3-cairo-pyc (1.27.0-r0) (10/117) Installing py3-certifi (2024.8.30-r0) (11/117) Installing py3-certifi-pyc (2024.8.30-r0) (12/117) Installing libquadmath (14.2.0-r3) (13/117) Installing 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(4.2.2-r0) (36/117) Installing libjpeg-turbo (3.0.4-r0) (37/117) Installing lcms2 (2.16-r0) (38/117) Installing openjpeg (2.5.2-r0) (39/117) Installing libsharpyuv (1.4.0-r0) (40/117) Installing libwebp (1.4.0-r0) (41/117) Installing tiff (4.6.0t-r0) (42/117) Installing libwebpdemux (1.4.0-r0) (43/117) Installing libwebpmux (1.4.0-r0) (44/117) Installing libxau (1.0.11-r4) (45/117) Installing libmd (1.1.0-r0) (46/117) Installing libbsd (0.12.2-r0) (47/117) Installing libxdmcp (1.1.5-r1) (48/117) Installing libxcb (1.16.1-r0) (49/117) Installing py3-pillow (10.4.0-r0) (50/117) Installing py3-pillow-pyc (10.4.0-r0) (51/117) Installing py3-tz (2024.2-r0) (52/117) Installing py3-tz-pyc (2024.2-r0) (53/117) Installing tzdata (2024b-r1) (54/117) Installing tcl (8.6.15-r0) (55/117) Installing libx11 (1.8.10-r0) (56/117) Installing libxrender (0.9.11-r5) (57/117) Installing fontconfig (2.15.0-r1) (58/117) Installing libxft (2.3.8-r3) (59/117) Installing tk (8.6.15-r0) (60/117) Installing python3-tkinter (3.12.5-r0) (61/117) Installing python3-tkinter-pyc (3.12.5-r0) (62/117) Installing py3-matplotlib-pyc (3.7.3-r2) (63/117) Installing python3-pyc (3.12.6-r0) (64/117) Installing libxext (1.3.6-r2) (65/117) Installing pixman (0.43.4-r0) (66/117) Installing cairo (1.18.2-r0) (67/117) Installing py3-cairo (1.27.0-r0) (68/117) Installing qhull (2020.2-r3) (69/117) Installing py3-matplotlib (3.7.3-r2) (70/117) Installing py3-attrs (24.2.0-r0) (71/117) Installing py3-attrs-pyc (24.2.0-r0) (72/117) Installing py3-tzdata (2024.2-r0) (73/117) Installing py3-tzdata-pyc (2024.2-r0) (74/117) Installing py3-pandas (2.0.3-r2) (75/117) Installing py3-pandas-pyc (2.0.3-r2) (76/117) Installing yaml (0.2.5-r2) (77/117) Installing py3-yaml (6.0.2-r0) (78/117) Installing py3-yaml-pyc (6.0.2-r0) (79/117) Installing py3-charset-normalizer (3.3.2-r1) (80/117) Installing py3-charset-normalizer-pyc (3.3.2-r1) (81/117) Installing py3-idna (3.10-r0) (82/117) Installing py3-idna-pyc (3.10-r0) (83/117) Installing py3-urllib3 (1.26.20-r0) (84/117) Installing py3-urllib3-pyc (1.26.20-r0) (85/117) Installing py3-requests (2.32.3-r0) (86/117) Installing py3-requests-pyc (2.32.3-r0) (87/117) Installing py3-typing-extensions (4.12.2-r0) (88/117) Installing py3-typing-extensions-pyc (4.12.2-r0) (89/117) Installing py3-setuptools (70.3.0-r0) (90/117) Installing py3-setuptools-pyc (70.3.0-r0) (91/117) Installing py3-installer (0.7.0-r2) (92/117) Installing py3-installer-pyc (0.7.0-r2) (93/117) Installing py3-gpep517 (16-r0) (94/117) Installing py3-gpep517-pyc (16-r0) (95/117) Installing py3-editables (0.5-r2) (96/117) Installing py3-editables-pyc (0.5-r2) (97/117) Installing py3-pathspec (0.12.1-r2) (98/117) Installing py3-pathspec-pyc (0.12.1-r2) (99/117) Installing py3-pluggy (1.5.0-r0) (100/117) Installing py3-pluggy-pyc (1.5.0-r0) (101/117) Installing py3-trove-classifiers (2024.9.12-r0) (102/117) Installing py3-trove-classifiers-pyc (2024.9.12-r0) (103/117) Installing py3-hatchling (1.25.0-r0) (104/117) Installing py3-hatchling-pyc (1.25.0-r0) (105/117) Installing py3-wheel (0.43.0-r0) (106/117) Installing py3-wheel-pyc (0.43.0-r0) (107/117) Installing py3-execnet (2.1.1-r0) (108/117) Installing py3-execnet-pyc (2.1.1-r0) (109/117) Installing py3-iniconfig (2.0.0-r1) (110/117) Installing py3-iniconfig-pyc (2.0.0-r1) (111/117) Installing py3-py (1.11.0-r4) (112/117) Installing py3-py-pyc (1.11.0-r4) (113/117) Installing py3-pytest (8.3.3-r0) (114/117) Installing py3-pytest-pyc (8.3.3-r0) (115/117) Installing py3-pytest-xdist (3.6.1-r0) (116/117) Installing py3-pytest-xdist-pyc (3.6.1-r0) (117/117) Installing .makedepends-py3-bioframe (20241001.102701) Executing busybox-1.36.1-r32.trigger OK: 663 MiB in 230 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.7.2/bioframe-0.7.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 950k 0 950k 0 0 1885k 0 --:--:-- --:--:-- --:--:-- 1885k >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.7.2.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/edge/bioframe-0.7.2.tar.gz... 2024-10-01 10:27:03,937 gpep517 INFO Building wheel via backend hatchling.build 2024-10-01 10:27:04,012 gpep517 INFO The backend produced .dist/bioframe-0.7.2-py2.py3-none-any.whl bioframe-0.7.2-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.7.2 configfile: pyproject.toml plugins: xdist-3.6.1 created: 48/48 workers 48 workers [68 items] ....s...ss.......................................................... [100%] =============================== warnings summary =============================== tests/test_assembly_info.py: 6 warnings tests/test_resources.py: 10 warnings /usr/lib/python3.12/site-packages/pandas/core/computation/expr.py:557: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return self.const_type(node.n, self.env) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 65 passed, 3 skipped, 16 warnings in 8.77s ================== >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 32.0 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.7.2-r1.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 348.0 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.7.2-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 328.0 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.7.2-r1.apk >>> py3-bioframe: Build complete at Tue, 01 Oct 2024 10:27:14 +0000 elapsed time 0h 0m 14s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/117) Purging .makedepends-py3-bioframe (20241001.102701) (2/117) Purging py3-matplotlib-pyc (3.7.3-r2) (3/117) Purging py3-matplotlib (3.7.3-r2) (4/117) Purging py3-cairo-pyc (1.27.0-r0) (5/117) Purging py3-cairo (1.27.0-r0) (6/117) Purging py3-contourpy-pyc (1.3.0-r0) (7/117) Purging py3-contourpy (1.3.0-r0) (8/117) Purging py3-cycler-pyc (0.12.1-r1) (9/117) Purging py3-cycler (0.12.1-r1) (10/117) Purging py3-fonttools-pyc (4.53.1-r0) (11/117) Purging py3-fonttools (4.53.1-r0) (12/117) Purging py3-kiwisolver-pyc (1.4.5-r1) (13/117) Purging py3-kiwisolver (1.4.5-r1) (14/117) Purging py3-pillow-pyc (10.4.0-r0) (15/117) Purging py3-pillow (10.4.0-r0) (16/117) Purging python3-tkinter-pyc (3.12.5-r0) (17/117) Purging python3-tkinter (3.12.5-r0) (18/117) Purging py3-pandas-pyc (2.0.3-r2) (19/117) Purging py3-pandas (2.0.3-r2) (20/117) Purging py3-dateutil-pyc (2.9.0-r1) (21/117) Purging py3-dateutil (2.9.0-r1) (22/117) Purging py3-six-pyc (1.16.0-r9) (23/117) Purging py3-six (1.16.0-r9) 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py3-iniconfig-pyc (2.0.0-r1) (70/117) Purging py3-iniconfig (2.0.0-r1) (71/117) Purging py3-packaging-pyc (24.1-r0) (72/117) Purging py3-packaging (24.1-r0) (73/117) Purging py3-parsing-pyc (3.1.4-r0) (74/117) Purging py3-parsing (3.1.4-r0) (75/117) Purging py3-pluggy-pyc (1.5.0-r0) (76/117) Purging py3-pluggy (1.5.0-r0) (77/117) Purging py3-py-pyc (1.11.0-r4) (78/117) Purging py3-py (1.11.0-r4) (79/117) Purging python3-pyc (3.12.6-r0) (80/117) Purging python3-pycache-pyc0 (3.12.6-r0) (81/117) Purging pyc (3.12.6-r0) (82/117) Purging python3 (3.12.6-r0) (83/117) Purging cairo (1.18.2-r0) (84/117) Purging gdbm (1.24-r0) (85/117) Purging lcms2 (2.16-r0) (86/117) Purging libffi (3.4.6-r0) (87/117) Purging libgfortran (14.2.0-r3) (88/117) Purging libimagequant (4.2.2-r0) (89/117) Purging libpanelw (6.5_p20240601-r1) (90/117) Purging libquadmath (14.2.0-r3) (91/117) Purging libwebpdemux (1.4.0-r0) (92/117) Purging libwebpmux (1.4.0-r0) (93/117) Purging libxext (1.3.6-r2) (94/117) Purging mpdecimal (4.0.0-r0) (95/117) Purging openjpeg (2.5.2-r0) (96/117) Purging pixman (0.43.4-r0) (97/117) Purging qhull (2020.2-r3) (98/117) Purging sqlite-libs (3.46.1-r0) (99/117) Purging tiff (4.6.0t-r0) (100/117) Purging tk (8.6.15-r0) (101/117) Purging yaml (0.2.5-r2) (102/117) Purging libxft (2.3.8-r3) (103/117) Purging fontconfig (2.15.0-r1) (104/117) Purging freetype (2.13.3-r0) (105/117) Purging libxrender (0.9.11-r5) (106/117) Purging libx11 (1.8.10-r0) (107/117) Purging libxcb (1.16.1-r0) (108/117) Purging libxdmcp (1.1.5-r1) (109/117) Purging libbsd (0.12.2-r0) (110/117) Purging libjpeg-turbo (3.0.4-r0) (111/117) Purging libmd (1.1.0-r0) (112/117) Purging libpng (1.6.44-r0) (113/117) Purging libwebp (1.4.0-r0) (114/117) Purging libsharpyuv (1.4.0-r0) (115/117) Purging libxau (1.0.11-r4) (116/117) Purging tcl (8.6.15-r0) (117/117) Purging tzdata (2024b-r1) Executing busybox-1.36.1-r32.trigger OK: 410 MiB in 113 packages >>> py3-bioframe: Updating the community/x86_64 repository index... >>> py3-bioframe: Signing the index...