>>> py3-bioframe: Building community/py3-bioframe 0.8.0-r0 (using abuild 3.15.0_rc2-r0) started Thu, 10 Apr 2025 13:06:21 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/108) Installing libquadmath (14.2.0-r5) (2/108) Installing libgfortran (14.2.0-r5) (3/108) Installing openblas (0.3.28-r0) (4/108) Installing libbz2 (1.0.8-r6) (5/108) Installing libffi (3.4.7-r0) (6/108) Installing gdbm (1.24-r0) (7/108) Installing xz-libs (5.8.1-r0) (8/108) Installing mpdecimal (4.0.0-r0) (9/108) Installing libpanelw (6.5_p20250216-r0) (10/108) Installing sqlite-libs (3.49.1-r0) (11/108) Installing python3 (3.12.10-r0) (12/108) Installing python3-pycache-pyc0 (3.12.10-r0) (13/108) Installing pyc (3.12.10-r0) (14/108) Installing py3-contourpy-pyc (1.3.1-r0) (15/108) Installing py3-cycler (0.12.1-r1) (16/108) Installing py3-cycler-pyc (0.12.1-r1) (17/108) Installing py3-six (1.17.0-r0) (18/108) Installing py3-six-pyc (1.17.0-r0) (19/108) Installing py3-dateutil (2.9.0-r1) (20/108) Installing py3-dateutil-pyc (2.9.0-r1) (21/108) Installing py3-fonttools (4.56.0-r0) (22/108) Installing py3-fonttools-pyc (4.56.0-r0) (23/108) Installing py3-kiwisolver (1.4.6-r0) (24/108) Installing py3-kiwisolver-pyc (1.4.6-r0) (25/108) Installing py3-matplotlib-fonts (3.9.3-r0) (26/108) Installing py3-matplotlib-data (3.9.3-r0) (27/108) Installing py3-parsing (3.2.0-r0) (28/108) Installing py3-parsing-pyc (3.2.0-r0) (29/108) Installing py3-packaging (24.2-r0) (30/108) Installing py3-packaging-pyc (24.2-r0) (31/108) Installing libpng (1.6.47-r0) (32/108) Installing freetype (2.13.3-r0) (33/108) Installing libimagequant (4.2.2-r0) (34/108) Installing libjpeg-turbo (3.1.0-r0) (35/108) Installing lcms2 (2.16-r0) (36/108) Installing openjpeg (2.5.3-r0) (37/108) Installing libsharpyuv (1.5.0-r0) (38/108) Installing libwebp (1.5.0-r0) (39/108) Installing tiff (4.7.0-r0) (40/108) Installing libwebpdemux (1.5.0-r0) (41/108) Installing libwebpmux (1.5.0-r0) (42/108) Installing libxau (1.0.12-r0) (43/108) Installing libmd (1.1.0-r0) (44/108) Installing libbsd (0.12.2-r0) (45/108) Installing libxdmcp (1.1.5-r1) (46/108) Installing libxcb (1.17.0-r0) (47/108) Installing py3-pillow (11.1.0-r0) (48/108) Installing py3-pillow-pyc (11.1.0-r0) (49/108) Installing py3-matplotlib-pyc (3.9.3-r0) (50/108) Installing py3-numpy-pyc (2.2.4-r0) (51/108) Installing python3-pyc (3.12.10-r0) (52/108) Installing py3-numpy (2.2.4-r0) (53/108) Installing py3-numpy-tests (2.2.4-r0) (54/108) Installing py3-contourpy (1.3.1-r0) (55/108) Installing qhull (2020.2-r3) (56/108) Installing py3-matplotlib (3.9.3-r0) (57/108) Installing py3-tz (2025.2-r0) (58/108) Installing py3-tz-pyc (2025.2-r0) (59/108) Installing py3-attrs (25.3.0-r0) (60/108) Installing py3-attrs-pyc (25.3.0-r0) (61/108) Installing py3-tzdata (2025.2-r0) (62/108) Installing py3-tzdata-pyc (2025.2-r0) (63/108) Installing py3-pandas (2.2.3-r0) (64/108) Installing py3-pandas-pyc (2.2.3-r0) (65/108) Installing yaml (0.2.5-r2) (66/108) Installing py3-yaml (6.0.2-r0) (67/108) Installing py3-yaml-pyc (6.0.2-r0) (68/108) Installing py3-certifi (2024.12.14-r0) (69/108) Installing py3-certifi-pyc (2024.12.14-r0) (70/108) Installing py3-charset-normalizer (3.4.1-r0) (71/108) Installing py3-charset-normalizer-pyc (3.4.1-r0) (72/108) Installing py3-idna (3.10-r0) (73/108) Installing py3-idna-pyc (3.10-r0) (74/108) Installing py3-urllib3 (1.26.20-r0) (75/108) Installing py3-urllib3-pyc (1.26.20-r0) (76/108) Installing py3-requests (2.32.3-r0) (77/108) Installing py3-requests-pyc (2.32.3-r0) (78/108) Installing py3-typing-extensions (4.13.0-r0) (79/108) Installing py3-typing-extensions-pyc (4.13.0-r0) (80/108) Installing py3-setuptools (77.0.3-r0) (81/108) Installing py3-setuptools-pyc (77.0.3-r0) (82/108) Installing py3-installer (0.7.0-r2) (83/108) Installing py3-installer-pyc (0.7.0-r2) (84/108) Installing py3-gpep517 (16-r0) (85/108) Installing py3-gpep517-pyc (16-r0) (86/108) Installing py3-editables (0.5-r2) (87/108) Installing py3-editables-pyc (0.5-r2) (88/108) Installing py3-pathspec (0.12.1-r2) (89/108) Installing py3-pathspec-pyc (0.12.1-r2) (90/108) Installing py3-pluggy (1.5.0-r0) (91/108) Installing py3-pluggy-pyc (1.5.0-r0) (92/108) Installing py3-trove-classifiers (2025.1.15.22-r0) (93/108) Installing py3-trove-classifiers-pyc (2025.1.15.22-r0) (94/108) Installing py3-hatchling (1.27.0-r0) (95/108) Installing py3-hatchling-pyc (1.27.0-r0) (96/108) Installing py3-wheel (0.43.0-r0) (97/108) Installing py3-wheel-pyc (0.43.0-r0) (98/108) Installing py3-execnet (2.1.1-r0) (99/108) Installing py3-execnet-pyc (2.1.1-r0) (100/108) Installing py3-iniconfig (2.1.0-r0) (101/108) Installing py3-iniconfig-pyc (2.1.0-r0) (102/108) Installing py3-py (1.11.0-r4) (103/108) Installing py3-py-pyc (1.11.0-r4) (104/108) Installing py3-pytest (8.3.5-r0) (105/108) Installing py3-pytest-pyc (8.3.5-r0) (106/108) Installing py3-pytest-xdist (3.6.1-r0) (107/108) Installing py3-pytest-xdist-pyc (3.6.1-r0) (108/108) Installing .makedepends-py3-bioframe (20250410.130622) Executing busybox-1.37.0-r15.trigger OK: 634 MiB in 214 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz Connecting to github.com (140.82.121.4:443) Connecting to codeload.github.com (140.82.121.10:443) saving to '/var/cache/distfiles/edge/bioframe-0.8.0.tar.gz.part' bioframe-0.8.0.tar.g 100% |********************************| 952k 0:00:00 ETA '/var/cache/distfiles/edge/bioframe-0.8.0.tar.gz.part' saved >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/edge/bioframe-0.8.0.tar.gz... 2025-04-10 13:06:25,781 gpep517 INFO Building wheel via backend hatchling.build 2025-04-10 13:06:25,877 gpep517 INFO The backend produced .dist/bioframe-0.8.0-py3-none-any.whl bioframe-0.8.0-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.8.0 configfile: pyproject.toml testpaths: tests plugins: xdist-3.6.1 created: 48/48 workers 48 workers [70 items] ..............ss..s................................................... [100%] =========================== short test summary info ============================ SKIPPED [1] tests/test_extras.py:97: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:129: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:85: could not import 'Bio': No module named 'Bio' ======================== 67 passed, 3 skipped in 9.87s ========================= /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0/popen-gw7/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0/popen-gw7/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0/popen-gw7 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0/popen-gw7' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-58ac23be-110a-41b9-9115-79127fc678f0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87/popen-gw26/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87/popen-gw26/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87/popen-gw26 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87/popen-gw26' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-262deea9-ce50-478f-aa44-31c125164e87' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97/popen-gw21/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97/popen-gw21/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97/popen-gw21 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97/popen-gw21' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-bba4155d-a7e4-4304-909c-5a51b1deda97' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f/popen-gw14/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f/popen-gw14/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f/popen-gw14 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f/popen-gw14' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-9f94e45c-1d32-43cb-a7d3-9b18b880084f' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-f8d98da7-edbe-41b8-83d3-9ba5c4790860/test_validate_zimfile_creatabl3 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-f8d98da7-edbe-41b8-83d3-9ba5c4790860/test_validate_zimfile_creatabl3' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-f8d98da7-edbe-41b8-83d3-9ba5c4790860 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-f8d98da7-edbe-41b8-83d3-9ba5c4790860' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2/popen-gw13/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2/popen-gw13/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2/popen-gw13 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2/popen-gw13' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-f2c1c332-f24d-4846-94a1-352ba7a980a2' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571/popen-gw38/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571/popen-gw38/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571/popen-gw38 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571/popen-gw38' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-20d0a8b6-20a3-4948-9a90-3dbaf9ff5571' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25/popen-gw10/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25/popen-gw10/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25/popen-gw10 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25/popen-gw10' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-96c2ecee-1c38-4a42-b162-8665443d5c25' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.8.0-r0.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 263.5 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.8.0-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 238.5 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.8.0-r0.apk >>> py3-bioframe: Build complete at Thu, 10 Apr 2025 13:06:37 +0000 elapsed time 0h 0m 16s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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