>>> py3-biopython: Building community/py3-biopython 1.82-r0 (using abuild 3.12.0-r1) started Wed, 03 Jan 2024 17:32:45 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/32) Installing libquadmath (13.2.1_git20231014-r0) (2/32) Installing libgfortran (13.2.1_git20231014-r0) (3/32) Installing openblas (0.3.25-r0) (4/32) Installing libbz2 (1.0.8-r6) (5/32) Installing libffi (3.4.4-r3) (6/32) Installing gdbm (1.23-r1) (7/32) Installing xz-libs (5.4.5-r0) (8/32) Installing mpdecimal (2.5.1-r2) (9/32) Installing libpanelw (6.4_p20231125-r0) (10/32) Installing readline (8.2.7-r0) (11/32) Installing sqlite-libs (3.44.2-r0) (12/32) Installing python3 (3.11.6-r1) (13/32) Installing python3-pycache-pyc0 (3.11.6-r1) (14/32) Installing pyc (3.11.6-r1) (15/32) Installing py3-numpy-pyc (1.25.2-r0) (16/32) Installing python3-pyc (3.11.6-r1) (17/32) Installing py3-numpy (1.25.2-r0) (18/32) Installing py3-installer (0.7.0-r1) (19/32) Installing py3-installer-pyc (0.7.0-r1) (20/32) Installing py3-gpep517 (15-r1) (21/32) Installing py3-gpep517-pyc (15-r1) (22/32) Installing py3-parsing (3.1.1-r0) (23/32) Installing py3-parsing-pyc (3.1.1-r0) (24/32) Installing py3-packaging (23.2-r0) (25/32) Installing py3-packaging-pyc (23.2-r0) (26/32) Installing py3-setuptools (68.2.2-r0) (27/32) Installing py3-setuptools-pyc (68.2.2-r0) (28/32) Installing py3-wheel (0.42.0-r0) (29/32) Installing py3-wheel-pyc (0.42.0-r0) (30/32) Installing py3-numpy-dev (1.25.2-r0) (31/32) Installing python3-dev (3.11.6-r1) (32/32) Installing .makedepends-py3-biopython (20240103.173247) Executing busybox-1.36.1-r18.trigger OK: 554 MiB in 138 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 146 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 86 18.5M 86 16.0M 0 0 18.8M 0 --:--:-- --:--:-- --:--:-- 18.8M 100 18.5M 100 18.5M 0 0 19.0M 0 --:--:-- --:--:-- --:--:-- 20.7M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.82.tar.gz... 2024-01-03 17:32:50,427 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-01-03 17:32:50,472 root INFO running bdist_wheel 2024-01-03 17:32:50,495 root INFO running build 2024-01-03 17:32:50,495 root INFO running build_py 2024-01-03 17:32:50,499 root INFO creating build 2024-01-03 17:32:50,499 root INFO creating build/lib.linux-x86_64-cpython-311 2024-01-03 17:32:50,499 root INFO creating build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,499 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,500 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,500 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,501 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,501 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,502 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,502 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,503 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,503 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,504 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,504 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,504 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,505 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,505 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Affy 2024-01-03 17:32:50,505 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Affy 2024-01-03 17:32:50,506 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-311/Bio/Affy 2024-01-03 17:32:50,507 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,507 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,507 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,508 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,508 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,508 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,509 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,509 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,509 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,510 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,510 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,511 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,511 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,511 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,512 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,512 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,513 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,513 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,514 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,514 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,514 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,515 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,515 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,515 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,516 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,516 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,516 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,517 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,517 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,517 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,518 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,518 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,518 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,518 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,519 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,519 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/Applications 2024-01-03 17:32:50,519 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices 2024-01-03 17:32:50,520 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices 2024-01-03 17:32:50,520 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,520 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,521 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,521 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,521 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,522 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,522 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,522 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,522 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,523 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,523 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,523 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-311/Bio/AlignIO 2024-01-03 17:32:50,524 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Alphabet 2024-01-03 17:32:50,524 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Alphabet 2024-01-03 17:32:50,524 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Application 2024-01-03 17:32:50,525 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Application 2024-01-03 17:32:50,525 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,525 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,526 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,526 root INFO copying Bio/Blast/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,526 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,527 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-311/Bio/Blast 2024-01-03 17:32:50,527 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/CAPS 2024-01-03 17:32:50,527 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/CAPS 2024-01-03 17:32:50,528 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:32:50,528 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:32:50,529 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/codonalign 2024-01-03 17:32:50,529 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign 2024-01-03 17:32:50,529 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign 2024-01-03 17:32:50,529 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-311/Bio/codonalign 2024-01-03 17:32:50,530 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Compass 2024-01-03 17:32:50,530 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Compass 2024-01-03 17:32:50,530 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Data 2024-01-03 17:32:50,531 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-311/Bio/Data 2024-01-03 17:32:50,531 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Data 2024-01-03 17:32:50,531 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-311/Bio/Data 2024-01-03 17:32:50,532 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-311/Bio/Data 2024-01-03 17:32:50,532 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Emboss 2024-01-03 17:32:50,532 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss 2024-01-03 17:32:50,533 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss 2024-01-03 17:32:50,533 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss 2024-01-03 17:32:50,533 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-311/Bio/Emboss 2024-01-03 17:32:50,534 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Entrez 2024-01-03 17:32:50,534 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Entrez 2024-01-03 17:32:50,534 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-311/Bio/Entrez 2024-01-03 17:32:50,535 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,535 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,535 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,535 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,536 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,536 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,536 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-311/Bio/ExPASy 2024-01-03 17:32:50,537 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/GenBank 2024-01-03 17:32:50,537 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank 2024-01-03 17:32:50,537 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank 2024-01-03 17:32:50,538 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank 2024-01-03 17:32:50,538 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/GenBank 2024-01-03 17:32:50,539 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Geo 2024-01-03 17:32:50,539 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Geo 2024-01-03 17:32:50,539 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-311/Bio/Geo 2024-01-03 17:32:50,539 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,540 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,540 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,540 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,541 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,541 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,541 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,541 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics 2024-01-03 17:32:50,542 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,542 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,542 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,543 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,543 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,543 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,544 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,544 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,544 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,545 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,545 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,545 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,546 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:32:50,546 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,546 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,547 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,547 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,547 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,548 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/HMM 2024-01-03 17:32:50,548 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG 2024-01-03 17:32:50,548 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG 2024-01-03 17:32:50,548 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG 2024-01-03 17:32:50,549 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound 2024-01-03 17:32:50,549 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound 2024-01-03 17:32:50,549 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme 2024-01-03 17:32:50,550 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme 2024-01-03 17:32:50,550 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene 2024-01-03 17:32:50,550 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene 2024-01-03 17:32:50,551 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map 2024-01-03 17:32:50,551 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map 2024-01-03 17:32:50,551 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,551 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf 2024-01-03 17:32:50,552 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf 2024-01-03 17:32:50,552 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf 2024-01-03 17:32:50,552 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf 2024-01-03 17:32:50,553 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML 2024-01-03 17:32:50,553 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML 2024-01-03 17:32:50,553 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML 2024-01-03 17:32:50,554 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML 2024-01-03 17:32:50,554 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Medline 2024-01-03 17:32:50,554 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Medline 2024-01-03 17:32:50,555 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,555 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,555 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,556 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,556 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,556 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,556 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,557 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,557 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,557 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,558 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,558 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:50,558 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/motifs/applications 2024-01-03 17:32:50,559 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/applications 2024-01-03 17:32:50,559 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/applications 2024-01-03 17:32:50,559 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar 2024-01-03 17:32:50,560 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar 2024-01-03 17:32:50,560 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar 2024-01-03 17:32:50,560 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,561 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,561 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,561 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,561 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,562 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:50,562 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/NMR 2024-01-03 17:32:50,562 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR 2024-01-03 17:32:50,563 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR 2024-01-03 17:32:50,563 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-311/Bio/NMR 2024-01-03 17:32:50,563 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Pathway 2024-01-03 17:32:50,564 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway 2024-01-03 17:32:50,564 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep 2024-01-03 17:32:50,564 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep 2024-01-03 17:32:50,565 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep 2024-01-03 17:32:50,565 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep 2024-01-03 17:32:50,566 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,566 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,566 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,567 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,567 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,567 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,568 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,568 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,568 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,569 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,569 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,569 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,570 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,570 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,570 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,570 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,571 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,571 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,571 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,572 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,572 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,572 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,573 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,573 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,573 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,574 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,574 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,574 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,575 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,575 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,575 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,576 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,576 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,576 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,576 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,577 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,577 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,577 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:50,578 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/phenotype 2024-01-03 17:32:50,578 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype 2024-01-03 17:32:50,578 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype 2024-01-03 17:32:50,579 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-311/Bio/phenotype 2024-01-03 17:32:50,579 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/PopGen 2024-01-03 17:32:50,579 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen 2024-01-03 17:32:50,580 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,580 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,580 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,580 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,581 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,581 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:32:50,582 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Restriction 2024-01-03 17:32:50,582 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction 2024-01-03 17:32:50,582 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction 2024-01-03 17:32:50,582 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction 2024-01-03 17:32:50,583 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-311/Bio/Restriction 2024-01-03 17:32:50,584 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,584 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,585 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,585 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,585 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,586 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,586 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,586 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-311/Bio/SCOP 2024-01-03 17:32:50,587 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,587 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,588 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,588 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,588 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,589 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO 2024-01-03 17:32:50,589 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,589 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,590 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,590 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,590 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,591 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model 2024-01-03 17:32:50,591 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:32:50,591 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:32:50,592 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:32:50,592 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:32:50,592 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:32:50,593 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:32:50,593 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:32:50,593 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,594 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,594 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,594 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,594 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,595 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,595 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:32:50,596 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,596 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,596 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,596 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,597 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,597 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:32:50,597 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:32:50,598 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:32:50,598 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:32:50,599 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,599 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,599 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,599 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,600 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,600 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,600 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,601 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,601 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,601 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,602 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,602 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,602 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,603 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,603 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,603 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,604 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,604 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,604 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,605 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,605 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,605 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,606 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:50,606 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,606 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,607 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,607 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,607 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,608 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,608 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,608 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-311/Bio/SeqUtils 2024-01-03 17:32:50,609 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Sequencing 2024-01-03 17:32:50,609 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing 2024-01-03 17:32:50,609 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing 2024-01-03 17:32:50,609 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing 2024-01-03 17:32:50,610 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:32:50,610 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:32:50,610 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:32:50,611 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:32:50,611 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:32:50,611 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer 2024-01-03 17:32:50,612 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer 2024-01-03 17:32:50,612 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/SwissProt 2024-01-03 17:32:50,612 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-311/Bio/SwissProt 2024-01-03 17:32:50,613 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/SwissProt 2024-01-03 17:32:50,613 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/TogoWS 2024-01-03 17:32:50,613 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/TogoWS 2024-01-03 17:32:50,614 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,614 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,614 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,615 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,615 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,615 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,616 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,616 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,616 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,617 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,617 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,617 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,618 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,618 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,618 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,618 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,619 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo 2024-01-03 17:32:50,619 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications 2024-01-03 17:32:50,620 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications 2024-01-03 17:32:50,620 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications 2024-01-03 17:32:50,620 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications 2024-01-03 17:32:50,620 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications 2024-01-03 17:32:50,621 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,621 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,621 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,622 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,622 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,622 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,623 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,623 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,623 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,624 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML 2024-01-03 17:32:50,624 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/UniGene 2024-01-03 17:32:50,624 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/UniGene 2024-01-03 17:32:50,625 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/UniProt 2024-01-03 17:32:50,625 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-311/Bio/UniProt 2024-01-03 17:32:50,625 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-311/Bio/UniProt 2024-01-03 17:32:50,626 root INFO creating build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,626 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,626 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,627 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,627 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,627 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:50,628 root INFO running egg_info 2024-01-03 17:32:50,630 root INFO writing biopython.egg-info/PKG-INFO 2024-01-03 17:32:50,630 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-01-03 17:32:50,631 root INFO writing requirements to biopython.egg-info/requires.txt 2024-01-03 17:32:50,631 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-01-03 17:32:50,646 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-01-03 17:32:50,668 root INFO reading manifest template 'MANIFEST.in' 2024-01-03 17:32:50,805 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-01-03 17:32:50,809 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-03 17:32:50,813 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-01-03 17:32:50,817 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-01-03 17:32:50,821 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-01-03 17:32:50,830 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-01-03 17:32:50,830 root INFO adding license file 'LICENSE' 2024-01-03 17:32:50,830 root INFO adding license file 'LICENSE.rst' 2024-01-03 17:32:50,876 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-01-03 17:32:50,916 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,917 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:50,917 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,917 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:50,918 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,918 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,918 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,919 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,919 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,919 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,920 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,920 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,920 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,920 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,921 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,921 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,921 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,922 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,922 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,922 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,922 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,923 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,923 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,923 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,924 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,924 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,924 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,924 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,925 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,925 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,925 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,926 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,926 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,926 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,927 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:32:50,927 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:32:50,927 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:32:50,928 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:32:50,928 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,928 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,929 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,929 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,929 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,930 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,930 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,930 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,931 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,931 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,931 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,932 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,932 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,932 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,933 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,933 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,933 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,933 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,934 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,934 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,934 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,935 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,935 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,935 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,936 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,936 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,936 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,937 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,937 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,938 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,938 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,938 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,939 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,939 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,940 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,940 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,941 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,941 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,941 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,942 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,942 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,942 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,943 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,943 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,943 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,944 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,944 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,944 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,945 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,945 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,946 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,946 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,946 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,947 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,947 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,947 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,947 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,948 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,948 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,948 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,949 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,949 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,949 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,950 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,950 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,950 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,951 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,951 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,951 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,951 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,952 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,952 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,952 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,953 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,953 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,953 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,953 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,954 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,954 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,955 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,955 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,955 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,955 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,956 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,956 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,956 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,957 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,957 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,957 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,957 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,957 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,958 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,958 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,958 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,958 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,959 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,959 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,959 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,959 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,959 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,960 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,960 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,960 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,960 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,960 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,961 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,961 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,961 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,961 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,962 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,962 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,962 root INFO 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build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,964 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,964 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,965 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,965 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,965 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,965 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,965 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,966 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,966 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,966 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,966 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,967 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,967 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,967 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,967 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,967 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,968 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,968 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,968 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,968 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,969 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,969 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,969 root 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build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,971 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,971 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,971 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,971 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,972 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,972 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,972 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,972 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,973 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,973 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,973 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,973 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,974 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,974 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,974 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,974 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,974 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,975 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,975 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,975 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,975 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,975 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,976 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,976 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,976 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,976 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,977 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,977 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,977 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,978 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,978 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,978 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,978 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,978 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,979 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,979 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,979 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,979 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,980 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,980 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,980 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,981 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,981 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,981 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,981 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,981 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,982 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,982 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,982 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,982 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,982 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,983 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,983 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,983 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,983 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,984 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,984 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,984 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,984 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,985 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,985 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,985 root INFO 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Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,989 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,989 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,989 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,989 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,990 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,990 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,990 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,990 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,991 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,991 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,991 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,991 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,992 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,992 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,992 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,993 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,993 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,993 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,993 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,993 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,994 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,994 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,994 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,994 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,995 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,995 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,995 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,995 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,996 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,996 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,996 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,996 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,996 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,997 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,997 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,997 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,997 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,997 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,998 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,998 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,998 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,998 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,999 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,999 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,999 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:50,999 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,000 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,000 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,000 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,000 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,000 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,001 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,001 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,001 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,001 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,002 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,002 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,002 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,002 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,002 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,003 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:32:51,003 root INFO creating build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs 2024-01-03 17:32:51,003 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs 2024-01-03 17:32:51,003 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:32:51,004 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:32:51,004 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:51,004 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:32:51,004 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:32:51,005 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-311/BioSQL 2024-01-03 17:32:51,012 root INFO running build_ext 2024-01-03 17:32:51,014 root INFO building 'Bio.Align._codonaligner' extension 2024-01-03 17:32:51,014 root INFO creating build/temp.linux-x86_64-cpython-311 2024-01-03 17:32:51,014 root INFO creating build/temp.linux-x86_64-cpython-311/Bio 2024-01-03 17:32:51,014 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/Align 2024-01-03 17:32:51,014 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-311/Bio/Align/_codonaligner.o 2024-01-03 17:32:51,902 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Align/_codonaligner.cpython-311-x86_64-linux-musl.so 2024-01-03 17:32:51,923 root INFO building 'Bio.Align._pairwisealigner' extension 2024-01-03 17:32:51,923 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-311/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-01-03 17:32:59,520 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Align/_pairwisealigner.cpython-311-x86_64-linux-musl.so 2024-01-03 17:32:59,548 root INFO building 'Bio.cpairwise2' extension 2024-01-03 17:32:59,548 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-01-03 17:33:00,073 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/cpairwise2.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:00,096 root INFO building 'Bio.Nexus.cnexus' extension 2024-01-03 17:33:00,097 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/Nexus 2024-01-03 17:33:00,097 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-311/Bio/Nexus/cnexus.o 2024-01-03 17:33:00,343 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:00,364 root INFO building 'Bio.motifs._pwm' extension 2024-01-03 17:33:00,364 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/motifs 2024-01-03 17:33:00,364 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-311/Bio/motifs/_pwm.o 2024-01-03 17:33:00,633 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:00,652 root INFO building 'Bio.Cluster._cluster' extension 2024-01-03 17:33:00,652 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/Cluster 2024-01-03 17:33:00,652 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-311/Bio/Cluster/cluster.o 2024-01-03 17:33:04,013 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.o 2024-01-03 17:33:05,127 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/Cluster/_cluster.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:05,151 root INFO building 'Bio.PDB.kdtrees' extension 2024-01-03 17:33:05,152 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/PDB 2024-01-03 17:33:05,152 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-311/Bio/PDB/kdtrees.o 2024-01-03 17:33:05,923 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:05,945 root INFO building 'Bio.PDB.ccealign' extension 2024-01-03 17:33:05,945 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.o 2024-01-03 17:33:06,418 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealign.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:06,433 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-01-03 17:33:06,433 root INFO creating build/temp.linux-x86_64-cpython-311/Bio/SeqIO 2024-01-03 17:33:06,433 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.o 2024-01-03 17:33:06,706 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-x86_64-linux-musl.so 2024-01-03 17:33:06,742 wheel INFO installing to build/bdist.linux-x86_64/wheel 2024-01-03 17:33:06,743 root INFO running install 2024-01-03 17:33:06,764 root INFO running install_lib 2024-01-03 17:33:06,771 root INFO creating build/bdist.linux-x86_64 2024-01-03 17:33:06,771 root INFO creating build/bdist.linux-x86_64/wheel 2024-01-03 17:33:06,772 root INFO creating build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,772 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,773 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-01-03 17:33:06,773 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-01-03 17:33:06,774 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-01-03 17:33:06,774 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-01-03 17:33:06,774 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-01-03 17:33:06,775 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-01-03 17:33:06,776 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-01-03 17:33:06,776 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-01-03 17:33:06,777 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-01-03 17:33:06,777 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-01-03 17:33:06,778 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-01-03 17:33:06,778 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass 2024-01-03 17:33:06,778 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass 2024-01-03 17:33:06,779 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,779 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,780 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,780 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,781 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,781 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,782 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,782 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,782 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,783 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,784 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,784 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,784 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,785 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,785 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,786 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,786 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,787 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,787 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,787 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,788 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,788 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,789 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,789 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/kdtrees.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,790 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,790 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,791 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,791 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,792 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,792 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,792 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,793 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,793 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,794 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ccealign.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,794 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,794 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,795 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-01-03 17:33:06,795 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-01-03 17:33:06,795 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-01-03 17:33:06,796 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-01-03 17:33:06,796 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,797 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,797 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,797 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,798 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,798 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,798 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-01-03 17:33:06,799 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-01-03 17:33:06,799 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-01-03 17:33:06,799 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-01-03 17:33:06,799 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-01-03 17:33:06,800 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-01-03 17:33:06,800 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-01-03 17:33:06,801 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-01-03 17:33:06,801 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-01-03 17:33:06,801 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,802 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,802 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,802 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,803 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,803 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,803 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,804 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,804 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,804 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,805 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,805 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,805 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,805 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,806 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,806 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,806 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,807 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,807 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,807 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,808 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,808 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,808 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,808 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,809 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,809 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,809 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,810 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,810 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,810 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,811 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,811 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,811 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,812 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,812 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,812 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,813 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,813 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,813 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,813 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,814 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,814 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,814 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,814 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,815 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,815 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,815 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,816 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,816 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,816 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,816 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,817 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,817 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,817 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,818 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,818 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,818 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,818 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,819 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,819 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,819 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,820 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,820 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,820 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,820 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,821 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,821 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,821 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,822 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,822 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,822 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,822 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,823 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,823 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,823 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,824 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,824 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,824 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,824 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,825 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,825 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,825 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,826 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,826 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,826 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,826 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,827 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,827 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,827 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,828 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,828 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,828 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,828 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,829 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,829 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,829 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,830 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,830 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,830 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,831 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,831 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,831 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,831 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,832 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,832 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,832 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,833 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,833 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,833 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,834 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,834 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,834 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,834 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,835 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,835 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,835 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,836 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,836 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,836 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,836 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,837 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,837 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,837 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,838 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,838 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,839 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,839 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,839 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,840 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,840 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,841 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,841 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,842 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,842 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,843 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,843 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,843 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,844 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,844 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,844 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,845 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,845 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,845 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,845 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,846 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,846 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,846 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,846 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,847 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,847 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,847 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,848 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,848 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,848 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,848 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,849 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,849 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,850 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,850 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,850 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,850 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,851 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,851 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,851 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,852 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,852 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,852 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,852 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,853 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,853 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,853 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,854 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,854 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,854 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,854 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,855 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,855 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,855 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,856 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,856 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,856 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,856 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,857 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,857 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,857 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,858 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,858 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,858 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,859 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,859 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,859 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,859 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,860 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,860 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,860 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,861 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,861 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,861 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,861 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,862 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,862 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,862 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,863 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,863 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,863 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,864 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,864 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,865 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,865 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,865 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,866 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,866 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,866 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,867 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,867 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,867 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,867 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,868 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,868 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,868 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,869 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,869 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,869 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,869 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,870 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,870 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,870 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,871 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,871 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,871 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,872 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,872 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,872 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,872 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,873 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,873 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,873 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,874 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,874 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,874 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,874 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,875 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,875 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,875 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,876 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,876 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,876 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,877 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,877 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,877 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,877 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,878 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,878 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,878 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,879 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,879 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,879 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,880 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,880 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,880 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,880 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,881 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,881 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,881 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,881 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,882 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,882 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,882 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,883 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,883 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,883 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,883 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,884 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,884 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,884 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,885 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,885 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,885 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,885 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,886 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,886 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,886 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,887 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,887 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,887 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,887 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,888 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,888 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-01-03 17:33:06,888 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-01-03 17:33:06,889 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-01-03 17:33:06,889 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-01-03 17:33:06,889 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,890 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,890 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,890 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,890 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,891 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-01-03 17:33:06,891 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-01-03 17:33:06,891 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-01-03 17:33:06,891 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-01-03 17:33:06,892 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-01-03 17:33:06,892 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-01-03 17:33:06,892 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-01-03 17:33:06,893 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application 2024-01-03 17:33:06,893 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Application 2024-01-03 17:33:06,893 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy 2024-01-03 17:33:06,894 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-01-03 17:33:06,894 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-01-03 17:33:06,894 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-01-03 17:33:06,894 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-01-03 17:33:06,895 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,895 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,895 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,895 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,896 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,896 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-01-03 17:33:06,896 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-01-03 17:33:06,896 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-01-03 17:33:06,897 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-01-03 17:33:06,897 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,897 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,898 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,898 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Blast/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,898 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,898 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-01-03 17:33:06,899 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-01-03 17:33:06,899 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-01-03 17:33:06,899 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-01-03 17:33:06,900 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-01-03 17:33:06,900 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-01-03 17:33:06,900 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-01-03 17:33:06,900 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-01-03 17:33:06,901 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-01-03 17:33:06,901 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-01-03 17:33:06,901 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-01-03 17:33:06,901 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-01-03 17:33:06,902 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-01-03 17:33:06,902 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-01-03 17:33:06,902 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-01-03 17:33:06,902 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-01-03 17:33:06,903 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-01-03 17:33:06,903 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-01-03 17:33:06,903 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-01-03 17:33:06,904 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-01-03 17:33:06,904 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,904 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,904 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,905 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,905 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,905 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,906 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,906 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-01-03 17:33:06,906 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-01-03 17:33:06,906 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-01-03 17:33:06,907 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-01-03 17:33:06,907 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-01-03 17:33:06,907 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,908 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,908 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,908 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,909 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,909 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,909 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,909 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,910 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,910 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,910 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,910 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-01-03 17:33:06,911 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,911 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,911 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,912 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,912 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,912 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,912 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,913 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,913 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-01-03 17:33:06,913 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data 2024-01-03 17:33:06,914 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-01-03 17:33:06,914 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-01-03 17:33:06,914 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-01-03 17:33:06,915 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-01-03 17:33:06,915 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,915 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,915 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,916 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,916 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,916 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,916 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-01-03 17:33:06,917 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,917 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,917 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-01-03 17:33:06,917 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-01-03 17:33:06,918 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-01-03 17:33:06,918 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-01-03 17:33:06,918 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-01-03 17:33:06,920 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,920 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,921 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-01-03 17:33:06,921 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-01-03 17:33:06,921 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,922 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,922 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,922 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,923 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,923 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,923 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,923 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,924 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-01-03 17:33:06,924 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,924 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,925 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:33:06,925 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:33:06,925 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:33:06,925 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:33:06,926 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:33:06,926 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:33:06,926 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:33:06,926 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,927 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,927 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,927 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,927 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,928 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:33:06,928 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,928 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,929 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,929 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,929 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,929 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,930 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,930 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-01-03 17:33:06,930 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,931 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,931 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,931 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,931 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,932 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,932 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,932 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:33:06,933 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-01-03 17:33:06,933 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:33:06,933 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:33:06,933 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:33:06,934 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,934 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,934 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo 2024-01-03 17:33:06,934 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-01-03 17:33:06,935 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-01-03 17:33:06,935 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,935 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,936 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,936 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,936 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-01-03 17:33:06,936 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-01-03 17:33:06,937 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-01-03 17:33:06,937 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,937 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,937 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,938 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,938 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,938 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/_pwm.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,939 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,939 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,939 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,939 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-01-03 17:33:06,940 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-01-03 17:33:06,940 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-01-03 17:33:06,940 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-01-03 17:33:06,941 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,941 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,941 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,941 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,942 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,942 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,942 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,943 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,943 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,943 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,943 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,944 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,944 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,944 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,945 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,945 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,945 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,946 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,946 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,946 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,947 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,947 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,947 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,947 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,948 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,948 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,948 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-01-03 17:33:06,949 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-01-03 17:33:06,949 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-01-03 17:33:06,949 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-01-03 17:33:06,949 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-01-03 17:33:06,950 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-01-03 17:33:06,950 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-01-03 17:33:06,950 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-01-03 17:33:06,951 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-01-03 17:33:06,951 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/cpairwise2.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,951 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,951 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,952 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,952 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,952 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,952 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,953 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,953 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,953 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,954 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,954 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,954 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,954 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,955 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,955 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,955 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,956 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,956 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,956 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:33:06,956 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,957 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-01-03 17:33:06,957 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-01-03 17:33:06,957 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-01-03 17:33:06,958 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-01-03 17:33:06,958 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,958 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,958 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-01-03 17:33:06,959 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-01-03 17:33:06,959 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,959 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline 2024-01-03 17:33:06,959 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline 2024-01-03 17:33:06,960 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,960 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,960 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,961 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,961 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,961 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,962 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/_codonaligner.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,962 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,962 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,963 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,963 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,964 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,964 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,964 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,965 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,965 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,965 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,965 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,966 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,966 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,966 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,967 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,967 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-01-03 17:33:06,967 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,967 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/_pairwisealigner.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,968 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,969 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,969 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,970 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,970 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,970 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,971 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,971 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-01-03 17:33:06,971 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,971 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,972 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,972 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,972 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,973 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,973 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,973 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,973 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,974 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,974 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,974 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,974 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,975 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,975 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,975 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,975 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,976 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,976 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,976 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,976 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,977 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,977 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,977 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,977 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,978 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,978 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,978 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,978 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,979 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,979 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:33:06,979 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-01-03 17:33:06,980 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,980 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,980 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,980 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,981 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,981 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,981 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,982 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-01-03 17:33:06,982 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR 2024-01-03 17:33:06,982 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-01-03 17:33:06,982 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-01-03 17:33:06,983 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-01-03 17:33:06,983 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,983 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,983 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,984 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,984 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,984 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,985 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,985 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-01-03 17:33:06,985 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-01-03 17:33:06,985 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-01-03 17:33:06,986 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-01-03 17:33:06,986 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-01-03 17:33:06,986 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio 2024-01-03 17:33:06,987 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,987 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,987 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,988 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/cnexus.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,988 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,988 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,989 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,989 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-01-03 17:33:06,989 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,989 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,990 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,990 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,990 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,991 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,991 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,991 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,991 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,992 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,992 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,992 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-01-03 17:33:06,993 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,993 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,993 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/_cluster.cpython-311-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,994 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,994 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,995 root INFO copying build/lib.linux-x86_64-cpython-311/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-01-03 17:33:06,996 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,996 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,996 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,996 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,997 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,997 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,997 root INFO copying build/lib.linux-x86_64-cpython-311/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL 2024-01-03 17:33:06,997 root INFO running install_egg_info 2024-01-03 17:33:07,003 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.82-py3.11.egg-info 2024-01-03 17:33:07,004 root INFO running install_scripts 2024-01-03 17:33:07,010 wheel INFO creating build/bdist.linux-x86_64/wheel/biopython-1.82.dist-info/WHEEL 2024-01-03 17:33:07,011 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-gedr3wt1/biopython-1.82-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it 2024-01-03 17:33:07,012 wheel INFO adding 'Bio/File.py' 2024-01-03 17:33:07,012 wheel INFO adding 'Bio/LogisticRegression.py' 2024-01-03 17:33:07,013 wheel INFO adding 'Bio/MarkovModel.py' 2024-01-03 17:33:07,013 wheel INFO adding 'Bio/MaxEntropy.py' 2024-01-03 17:33:07,013 wheel INFO adding 'Bio/NaiveBayes.py' 2024-01-03 17:33:07,014 wheel INFO adding 'Bio/Seq.py' 2024-01-03 17:33:07,015 wheel INFO adding 'Bio/SeqFeature.py' 2024-01-03 17:33:07,016 wheel INFO adding 'Bio/SeqRecord.py' 2024-01-03 17:33:07,017 wheel INFO adding 'Bio/__init__.py' 2024-01-03 17:33:07,017 wheel INFO adding 'Bio/_utils.py' 2024-01-03 17:33:07,018 wheel INFO adding 'Bio/bgzf.py' 2024-01-03 17:33:07,018 wheel INFO adding 'Bio/cpairwise2.cpython-311-x86_64-linux-musl.so' 2024-01-03 17:33:07,019 wheel INFO adding 'Bio/cpairwise2module.c' 2024-01-03 17:33:07,019 wheel INFO adding 'Bio/kNN.py' 2024-01-03 17:33:07,020 wheel INFO adding 'Bio/pairwise2.py' 2024-01-03 17:33:07,020 wheel INFO adding 'Bio/py.typed' 2024-01-03 17:33:07,021 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-01-03 17:33:07,021 wheel INFO adding 'Bio/Affy/__init__.py' 2024-01-03 17:33:07,022 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-01-03 17:33:07,023 wheel INFO adding 'Bio/Align/__init__.py' 2024-01-03 17:33:07,024 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-01-03 17:33:07,025 wheel INFO adding 'Bio/Align/_codonaligner.cpython-311-x86_64-linux-musl.so' 2024-01-03 17:33:07,026 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-01-03 17:33:07,029 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-311-x86_64-linux-musl.so' 2024-01-03 17:33:07,031 wheel INFO adding 'Bio/Align/a2m.py' 2024-01-03 17:33:07,032 wheel INFO adding 'Bio/Align/analysis.py' 2024-01-03 17:33:07,032 wheel INFO adding 'Bio/Align/bed.py' 2024-01-03 17:33:07,033 wheel INFO adding 'Bio/Align/bigbed.py' 2024-01-03 17:33:07,034 wheel INFO adding 'Bio/Align/bigmaf.py' 2024-01-03 17:33:07,034 wheel INFO adding 'Bio/Align/bigpsl.py' 2024-01-03 17:33:07,034 wheel INFO adding 'Bio/Align/chain.py' 2024-01-03 17:33:07,035 wheel INFO adding 'Bio/Align/clustal.py' 2024-01-03 17:33:07,035 wheel INFO adding 'Bio/Align/emboss.py' 2024-01-03 17:33:07,036 wheel INFO adding 'Bio/Align/exonerate.py' 2024-01-03 17:33:07,036 wheel INFO adding 'Bio/Align/fasta.py' 2024-01-03 17:33:07,036 wheel INFO adding 'Bio/Align/hhr.py' 2024-01-03 17:33:07,037 wheel INFO adding 'Bio/Align/interfaces.py' 2024-01-03 17:33:07,037 wheel INFO adding 'Bio/Align/maf.py' 2024-01-03 17:33:07,038 wheel INFO adding 'Bio/Align/mauve.py' 2024-01-03 17:33:07,038 wheel INFO adding 'Bio/Align/msf.py' 2024-01-03 17:33:07,038 wheel INFO adding 'Bio/Align/nexus.py' 2024-01-03 17:33:07,039 wheel INFO adding 'Bio/Align/phylip.py' 2024-01-03 17:33:07,039 wheel INFO adding 'Bio/Align/psl.py' 2024-01-03 17:33:07,039 wheel INFO adding 'Bio/Align/sam.py' 2024-01-03 17:33:07,040 wheel INFO adding 'Bio/Align/stockholm.py' 2024-01-03 17:33:07,040 wheel INFO adding 'Bio/Align/tabular.py' 2024-01-03 17:33:07,041 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-01-03 17:33:07,041 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-01-03 17:33:07,042 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-01-03 17:33:07,042 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-01-03 17:33:07,042 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-01-03 17:33:07,043 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-01-03 17:33:07,044 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-01-03 17:33:07,044 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-01-03 17:33:07,044 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-01-03 17:33:07,044 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2024-01-03 17:33:07,045 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2024-01-03 17:33:07,045 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2024-01-03 17:33:07,046 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2024-01-03 17:33:07,046 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2024-01-03 17:33:07,046 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2024-01-03 17:33:07,047 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2024-01-03 17:33:07,047 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2024-01-03 17:33:07,047 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2024-01-03 17:33:07,047 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2024-01-03 17:33:07,048 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2024-01-03 17:33:07,048 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2024-01-03 17:33:07,048 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2024-01-03 17:33:07,049 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2024-01-03 17:33:07,049 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2024-01-03 17:33:07,049 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2024-01-03 17:33:07,049 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2024-01-03 17:33:07,050 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2024-01-03 17:33:07,050 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2024-01-03 17:33:07,050 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2024-01-03 17:33:07,050 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2024-01-03 17:33:07,051 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2024-01-03 17:33:07,051 wheel INFO adding 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.11/site-packages/Bio/Nexus/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.11/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.11/site-packages/Bio/AlignIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.11/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.11/site-packages/Bio/Cluster/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.11/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.11/site-packages/BioSQL/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.11 >>> py3-biopython-pyc*: Package size: 7.8 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.11 so:libc.musl-x86_64.so.1 >>> py3-biopython*: Package size: 12.5 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r0.apk >>> py3-biopython: Build complete at Wed, 03 Jan 2024 17:33:12 +0000 elapsed time 0h 0m 27s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/32) Purging .makedepends-py3-biopython (20240103.173247) (2/32) Purging py3-gpep517-pyc (15-r1) (3/32) Purging py3-gpep517 (15-r1) (4/32) Purging py3-installer-pyc (0.7.0-r1) (5/32) Purging py3-installer (0.7.0-r1) (6/32) Purging py3-setuptools-pyc (68.2.2-r0) (7/32) Purging py3-setuptools (68.2.2-r0) (8/32) Purging py3-wheel-pyc (0.42.0-r0) (9/32) Purging py3-wheel (0.42.0-r0) (10/32) Purging py3-packaging-pyc (23.2-r0) (11/32) Purging py3-packaging (23.2-r0) (12/32) Purging py3-parsing-pyc (3.1.1-r0) (13/32) Purging py3-parsing (3.1.1-r0) (14/32) Purging py3-numpy-dev (1.25.2-r0) (15/32) Purging py3-numpy-pyc (1.25.2-r0) (16/32) Purging py3-numpy (1.25.2-r0) (17/32) Purging openblas (0.3.25-r0) (18/32) Purging python3-dev (3.11.6-r1) (19/32) Purging libgfortran (13.2.1_git20231014-r0) (20/32) Purging libquadmath (13.2.1_git20231014-r0) (21/32) Purging python3-pyc (3.11.6-r1) (22/32) Purging python3-pycache-pyc0 (3.11.6-r1) (23/32) Purging pyc (3.11.6-r1) (24/32) Purging python3 (3.11.6-r1) (25/32) Purging gdbm (1.23-r1) (26/32) Purging libbz2 (1.0.8-r6) (27/32) Purging libffi (3.4.4-r3) (28/32) Purging libpanelw (6.4_p20231125-r0) (29/32) Purging mpdecimal (2.5.1-r2) (30/32) Purging readline (8.2.7-r0) (31/32) Purging sqlite-libs (3.44.2-r0) (32/32) Purging xz-libs (5.4.5-r0) Executing busybox-1.36.1-r18.trigger OK: 378 MiB in 106 packages >>> py3-biopython: Updating the community/x86_64 repository index... >>> py3-biopython: Signing the index...