>>> py3-biopython: Building community/py3-biopython 1.82-r1 (using abuild 3.12.0-r5) started Sun, 14 Apr 2024 02:34:26 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/32) Installing libquadmath (13.2.1_git20240309-r0) (2/32) Installing libgfortran (13.2.1_git20240309-r0) (3/32) Installing openblas (0.3.27-r0) (4/32) Installing libbz2 (1.0.8-r6) (5/32) Installing libffi (3.4.6-r0) (6/32) Installing gdbm (1.23-r1) (7/32) Installing xz-libs (5.6.1-r3) (8/32) Installing mpdecimal (4.0.0-r0) (9/32) Installing libpanelw (6.4_p20240330-r0) (10/32) Installing readline (8.2.10-r0) (11/32) Installing sqlite-libs (3.45.2-r0) (12/32) Installing python3 (3.12.3-r0) (13/32) Installing python3-pycache-pyc0 (3.12.3-r0) (14/32) Installing pyc (3.12.3-r0) (15/32) Installing py3-numpy-pyc (1.25.2-r1) (16/32) Installing python3-pyc (3.12.3-r0) (17/32) Installing py3-numpy (1.25.2-r1) (18/32) Installing py3-installer (0.7.0-r2) (19/32) Installing py3-installer-pyc (0.7.0-r2) (20/32) Installing py3-gpep517 (15-r2) (21/32) Installing py3-gpep517-pyc (15-r2) (22/32) Installing py3-parsing (3.1.2-r1) (23/32) Installing py3-parsing-pyc (3.1.2-r1) (24/32) Installing py3-packaging (24.0-r1) (25/32) Installing py3-packaging-pyc (24.0-r1) (26/32) Installing py3-setuptools (69.2.0-r2) (27/32) Installing py3-setuptools-pyc (69.2.0-r2) (28/32) Installing py3-wheel (0.42.0-r1) (29/32) Installing py3-wheel-pyc (0.42.0-r1) (30/32) Installing py3-numpy-dev (1.25.2-r1) (31/32) Installing python3-dev (3.12.3-r0) (32/32) Installing .makedepends-py3-biopython (20240414.023428) Executing busybox-1.36.1-r25.trigger OK: 576 MiB in 139 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 18.5M 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 18.5M 100 18.5M 0 0 13.0M 0 0:00:01 0:00:01 --:--:-- 13.0M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.82.tar.gz... 2024-04-14 02:34:32,613 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-04-14 02:34:32,661 root INFO running bdist_wheel 2024-04-14 02:34:32,688 root INFO running build 2024-04-14 02:34:32,688 root INFO running build_py 2024-04-14 02:34:32,692 root INFO creating build 2024-04-14 02:34:32,692 root INFO creating build/lib.linux-x86_64-cpython-312 2024-04-14 02:34:32,693 root INFO creating build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,693 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,693 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,694 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,694 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,695 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,695 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,696 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,696 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,697 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,697 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,697 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,698 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,698 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:32,699 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-14 02:34:32,699 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-14 02:34:32,699 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy 2024-04-14 02:34:32,700 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,700 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,701 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,701 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,701 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,702 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,702 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,702 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,703 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,703 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,703 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,704 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,704 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,704 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,705 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,705 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,706 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,706 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,706 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,707 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,707 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,707 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,707 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,708 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,708 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:32,709 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,709 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,709 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,710 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,710 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,710 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,710 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,711 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,711 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,711 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,712 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications 2024-04-14 02:34:32,712 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-04-14 02:34:32,712 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices 2024-04-14 02:34:32,713 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,713 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,713 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,714 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,714 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,714 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,715 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,715 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,715 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,716 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,716 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,716 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO 2024-04-14 02:34:32,717 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-04-14 02:34:32,717 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Alphabet 2024-04-14 02:34:32,717 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Application 2024-04-14 02:34:32,717 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Application 2024-04-14 02:34:32,718 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,718 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,718 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,719 root INFO copying Bio/Blast/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,719 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,719 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast 2024-04-14 02:34:32,720 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-04-14 02:34:32,720 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/CAPS 2024-04-14 02:34:32,720 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:32,721 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:32,721 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-14 02:34:32,721 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-14 02:34:32,722 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-14 02:34:32,722 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign 2024-04-14 02:34:32,723 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-04-14 02:34:32,723 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Compass 2024-04-14 02:34:32,723 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-14 02:34:32,723 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-14 02:34:32,724 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-14 02:34:32,724 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-14 02:34:32,725 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data 2024-04-14 02:34:32,725 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-14 02:34:32,725 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-14 02:34:32,725 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-14 02:34:32,726 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-14 02:34:32,726 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss 2024-04-14 02:34:32,727 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-14 02:34:32,727 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-14 02:34:32,727 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez 2024-04-14 02:34:32,728 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,728 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,728 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,728 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,729 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,729 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,729 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy 2024-04-14 02:34:32,730 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-14 02:34:32,730 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-14 02:34:32,730 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-14 02:34:32,731 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-14 02:34:32,731 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank 2024-04-14 02:34:32,731 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-14 02:34:32,732 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-14 02:34:32,732 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo 2024-04-14 02:34:32,732 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,733 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,733 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,733 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,734 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,734 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,734 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,734 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics 2024-04-14 02:34:32,735 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,735 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,736 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,736 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,736 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,736 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,737 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,737 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,737 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,738 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,738 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,738 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,739 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:32,739 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,739 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,740 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,740 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,740 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,741 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM 2024-04-14 02:34:32,741 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-14 02:34:32,741 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-14 02:34:32,742 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG 2024-04-14 02:34:32,742 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-04-14 02:34:32,742 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound 2024-04-14 02:34:32,743 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-04-14 02:34:32,743 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme 2024-04-14 02:34:32,743 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-04-14 02:34:32,744 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene 2024-04-14 02:34:32,744 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-04-14 02:34:32,744 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map 2024-04-14 02:34:32,745 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,745 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-14 02:34:32,745 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-14 02:34:32,745 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-14 02:34:32,746 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf 2024-04-14 02:34:32,746 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-14 02:34:32,746 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-14 02:34:32,747 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-14 02:34:32,747 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML 2024-04-14 02:34:32,747 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-04-14 02:34:32,747 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Medline 2024-04-14 02:34:32,748 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,748 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,749 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,749 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,749 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,749 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,750 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,750 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,750 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,751 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,751 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,751 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:32,752 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-14 02:34:32,752 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-14 02:34:32,752 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications 2024-04-14 02:34:32,753 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-14 02:34:32,753 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-14 02:34:32,753 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar 2024-04-14 02:34:32,754 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,754 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,754 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,755 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,755 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,755 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:32,756 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-14 02:34:32,756 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-14 02:34:32,756 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-14 02:34:32,757 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR 2024-04-14 02:34:32,757 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-04-14 02:34:32,757 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway 2024-04-14 02:34:32,758 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-14 02:34:32,758 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-14 02:34:32,758 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-14 02:34:32,758 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep 2024-04-14 02:34:32,759 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,760 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,760 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,760 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,761 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,761 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,761 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,762 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,762 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,762 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,762 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,763 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,763 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,763 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,764 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,764 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,765 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,765 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,765 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,766 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,766 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,766 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,767 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,767 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,768 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,768 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,768 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,769 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,769 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,769 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,769 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,770 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,770 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,770 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,771 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,771 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,771 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,771 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:32,772 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-14 02:34:32,772 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-14 02:34:32,772 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-14 02:34:32,773 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype 2024-04-14 02:34:32,773 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-04-14 02:34:32,773 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen 2024-04-14 02:34:32,774 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,774 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,774 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,775 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,775 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,775 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop 2024-04-14 02:34:32,776 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-14 02:34:32,776 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-14 02:34:32,776 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-14 02:34:32,777 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-14 02:34:32,777 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction 2024-04-14 02:34:32,778 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,779 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,779 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,779 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,780 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,780 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,780 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,781 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP 2024-04-14 02:34:32,781 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,781 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,782 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,782 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,783 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,783 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO 2024-04-14 02:34:32,784 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,784 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,784 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,784 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,785 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,785 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model 2024-04-14 02:34:32,785 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-14 02:34:32,786 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-14 02:34:32,786 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-14 02:34:32,786 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO 2024-04-14 02:34:32,787 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:32,787 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:32,787 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:32,788 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,788 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,788 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,789 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,789 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,789 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,790 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO 2024-04-14 02:34:32,790 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,790 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,791 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,791 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,791 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,792 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:32,792 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:32,792 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:32,793 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:32,793 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,793 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,794 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,794 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,794 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,795 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,795 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,795 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,796 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,796 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,796 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,797 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,797 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,797 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,798 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,798 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,798 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,799 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,799 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,799 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,800 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,800 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,800 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:32,801 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,801 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,801 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,802 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,802 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,802 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,803 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,803 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils 2024-04-14 02:34:32,803 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-14 02:34:32,804 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-14 02:34:32,804 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-14 02:34:32,804 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing 2024-04-14 02:34:32,805 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-14 02:34:32,805 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-14 02:34:32,805 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-14 02:34:32,805 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-14 02:34:32,806 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications 2024-04-14 02:34:32,806 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-04-14 02:34:32,806 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer 2024-04-14 02:34:32,807 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-14 02:34:32,807 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-14 02:34:32,807 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt 2024-04-14 02:34:32,808 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-04-14 02:34:32,808 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/TogoWS 2024-04-14 02:34:32,809 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,809 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,809 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,809 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,810 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,810 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,810 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,811 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,811 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,812 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,812 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,812 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,812 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,813 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,813 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,813 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,814 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo 2024-04-14 02:34:32,814 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-14 02:34:32,814 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-14 02:34:32,815 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-14 02:34:32,815 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-14 02:34:32,815 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications 2024-04-14 02:34:32,816 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,816 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,816 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,817 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,817 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,817 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,818 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,818 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,818 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,818 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML 2024-04-14 02:34:32,819 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-04-14 02:34:32,819 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniGene 2024-04-14 02:34:32,820 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-14 02:34:32,820 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-14 02:34:32,820 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt 2024-04-14 02:34:32,820 root INFO creating build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,821 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,821 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,821 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,822 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,822 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:32,823 root INFO running egg_info 2024-04-14 02:34:32,825 root INFO writing biopython.egg-info/PKG-INFO 2024-04-14 02:34:32,826 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-04-14 02:34:32,826 root INFO writing requirements to biopython.egg-info/requires.txt 2024-04-14 02:34:32,827 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-04-14 02:34:32,849 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-04-14 02:34:32,873 root INFO reading manifest template 'MANIFEST.in' 2024-04-14 02:34:33,009 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-04-14 02:34:33,013 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-04-14 02:34:33,018 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-04-14 02:34:33,022 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-04-14 02:34:33,026 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-04-14 02:34:33,035 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-04-14 02:34:33,035 root INFO adding license file 'LICENSE' 2024-04-14 02:34:33,035 root INFO adding license file 'LICENSE.rst' 2024-04-14 02:34:33,085 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-04-14 02:34:33,132 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:33,133 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:33,133 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:33,133 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:33,134 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,135 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,135 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,136 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,136 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,136 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,136 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,136 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,137 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,137 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,137 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,137 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,138 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,138 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,138 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,138 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,138 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,139 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,139 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,139 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,140 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,140 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,140 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,140 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,141 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data 2024-04-14 02:34:33,141 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:33,141 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:33,141 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:33,142 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,142 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,142 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,142 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,145 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,145 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,145 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,145 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,145 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,146 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,146 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,146 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,146 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,147 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,147 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,147 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,147 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,148 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,149 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,149 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,149 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,149 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,150 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,150 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,151 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,151 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,151 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,152 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,152 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,152 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,152 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,153 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,153 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,153 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,153 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,154 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,154 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,154 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,154 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,155 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,155 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,155 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,155 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,155 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,156 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,156 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,156 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,156 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,157 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,157 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,157 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,157 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,158 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,158 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,158 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,158 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,158 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,159 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,159 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,159 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,159 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,160 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,160 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,160 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,160 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,160 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,161 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,161 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,161 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,161 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,162 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,162 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,162 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,162 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,162 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,163 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,163 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,163 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,163 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,164 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,164 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,164 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,164 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,164 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,165 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,165 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,165 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,165 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,166 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,166 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,166 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,166 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,166 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,167 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,167 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,167 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,167 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,167 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,168 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,168 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,168 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,168 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,169 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,169 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,169 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,169 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,169 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,170 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,170 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,170 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,170 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,170 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,171 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,171 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,171 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,171 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,172 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,172 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,172 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,172 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,172 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,173 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,173 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,173 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,173 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,174 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,174 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,174 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,174 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,174 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,175 root 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build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,176 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,177 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,177 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,177 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,177 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,177 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,178 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,178 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,178 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,178 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,179 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,179 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,179 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,179 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,180 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,180 root 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build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,182 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,182 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,182 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,182 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,183 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,183 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,183 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,183 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,184 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,184 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,184 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,184 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,184 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,185 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,185 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,185 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,186 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,186 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,186 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,186 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,187 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,187 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,187 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,187 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,188 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,188 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,188 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,188 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,188 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,189 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,189 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,189 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,189 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,189 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,190 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,190 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,190 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,190 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,191 root INFO 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Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,193 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,193 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,193 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,193 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,193 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,194 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,194 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,194 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,194 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,195 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,195 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,195 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,195 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,196 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,196 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,196 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,196 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,197 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,197 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,197 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,197 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,198 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,198 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,198 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,198 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,199 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,199 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,199 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,199 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,200 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,200 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,200 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,200 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,200 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,201 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,201 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,201 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,201 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,202 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,202 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,202 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,202 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,203 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,203 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,203 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,203 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,203 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,204 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,204 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,204 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,205 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,205 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,205 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,205 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,205 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,206 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,206 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,206 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,206 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,207 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,207 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,207 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,207 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,208 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,208 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,208 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,208 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,208 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,209 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs 2024-04-14 02:34:33,209 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-04-14 02:34:33,209 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs 2024-04-14 02:34:33,209 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:33,209 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:33,210 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:33,210 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:33,210 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:33,210 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-312/BioSQL 2024-04-14 02:34:33,219 root INFO running build_ext 2024-04-14 02:34:33,221 root INFO building 'Bio.Align._codonaligner' extension 2024-04-14 02:34:33,221 root INFO creating build/temp.linux-x86_64-cpython-312 2024-04-14 02:34:33,221 root INFO creating build/temp.linux-x86_64-cpython-312/Bio 2024-04-14 02:34:33,221 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Align 2024-04-14 02:34:33,221 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o 2024-04-14 02:34:33,922 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:33,941 root INFO building 'Bio.Align._pairwisealigner' extension 2024-04-14 02:34:33,942 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-14 02:34:41,704 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:41,733 root INFO building 'Bio.cpairwise2' extension 2024-04-14 02:34:41,733 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-04-14 02:34:42,173 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:42,192 root INFO building 'Bio.Nexus.cnexus' extension 2024-04-14 02:34:42,192 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Nexus 2024-04-14 02:34:42,193 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o 2024-04-14 02:34:42,426 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:42,445 root INFO building 'Bio.motifs._pwm' extension 2024-04-14 02:34:42,445 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/motifs 2024-04-14 02:34:42,446 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o 2024-04-14 02:34:42,726 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:42,745 root INFO building 'Bio.Cluster._cluster' extension 2024-04-14 02:34:42,746 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Cluster 2024-04-14 02:34:42,746 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o 2024-04-14 02:34:45,783 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o 2024-04-14 02:34:46,727 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:46,747 root INFO building 'Bio.PDB.kdtrees' extension 2024-04-14 02:34:46,748 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/PDB 2024-04-14 02:34:46,748 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o 2024-04-14 02:34:47,341 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:47,358 root INFO building 'Bio.PDB.ccealign' extension 2024-04-14 02:34:47,358 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o 2024-04-14 02:34:47,851 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:47,871 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-04-14 02:34:47,872 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/SeqIO 2024-04-14 02:34:47,872 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-04-14 02:34:48,146 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so 2024-04-14 02:34:48,173 wheel INFO installing to build/bdist.linux-x86_64/wheel 2024-04-14 02:34:48,174 root INFO running install 2024-04-14 02:34:48,200 root INFO running install_lib 2024-04-14 02:34:48,206 root INFO creating build/bdist.linux-x86_64 2024-04-14 02:34:48,206 root INFO creating build/bdist.linux-x86_64/wheel 2024-04-14 02:34:48,207 root INFO creating build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,208 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-14 02:34:48,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-14 02:34:48,209 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-14 02:34:48,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-14 02:34:48,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-14 02:34:48,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-14 02:34:48,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications 2024-04-14 02:34:48,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-14 02:34:48,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/Bio/Sequencing 2024-04-14 02:34:48,212 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-04-14 02:34:48,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/CAPS 2024-04-14 02:34:48,213 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass 2024-04-14 02:34:48,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Compass 2024-04-14 02:34:48,213 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,228 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-14 02:34:48,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-14 02:34:48,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-14 02:34:48,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf 2024-04-14 02:34:48,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/Bio/PDB 2024-04-14 02:34:48,232 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-14 02:34:48,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-14 02:34:48,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-14 02:34:48,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-14 02:34:48,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Emboss 2024-04-14 02:34:48,233 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-14 02:34:48,233 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-04-14 02:34:48,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs 2024-04-14 02:34:48,234 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,261 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,261 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,261 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,261 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,262 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,262 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,262 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,262 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,263 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,263 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,263 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,263 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,264 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,264 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,264 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,265 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,265 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,266 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,266 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,266 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,267 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,267 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,267 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,268 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,268 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,268 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,268 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,269 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,270 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,271 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,272 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,273 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,274 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,275 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,276 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,277 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,278 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,279 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,280 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,281 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,282 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,283 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,283 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,283 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,283 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,284 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,285 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,286 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,287 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,288 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,289 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,290 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,291 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,292 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,293 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,293 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,293 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,293 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,294 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,295 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,296 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,297 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,298 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,299 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,300 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,301 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,302 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,303 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs 2024-04-14 02:34:48,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-14 02:34:48,304 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/Bio/Entrez 2024-04-14 02:34:48,305 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-04-14 02:34:48,305 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,305 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop 2024-04-14 02:34:48,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/PopGen 2024-04-14 02:34:48,306 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-14 02:34:48,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-14 02:34:48,306 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-14 02:34:48,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-14 02:34:48,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/Bio/GenBank 2024-04-14 02:34:48,307 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application 2024-04-14 02:34:48,307 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Application 2024-04-14 02:34:48,308 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-14 02:34:48,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-14 02:34:48,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/Bio/Affy 2024-04-14 02:34:48,308 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-04-14 02:34:48,308 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer 2024-04-14 02:34:48,309 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,309 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/HMM 2024-04-14 02:34:48,310 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-14 02:34:48,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-14 02:34:48,310 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/Bio/UniProt 2024-04-14 02:34:48,310 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,311 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/Bio/Blast 2024-04-14 02:34:48,312 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-14 02:34:48,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-14 02:34:48,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-14 02:34:48,312 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/Bio/phenotype 2024-04-14 02:34:48,313 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-14 02:34:48,313 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-04-14 02:34:48,313 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme 2024-04-14 02:34:48,313 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-04-14 02:34:48,313 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound 2024-04-14 02:34:48,313 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-04-14 02:34:48,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Map 2024-04-14 02:34:48,314 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-14 02:34:48,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-14 02:34:48,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-14 02:34:48,314 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML 2024-04-14 02:34:48,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-14 02:34:48,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG 2024-04-14 02:34:48,315 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-04-14 02:34:48,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene 2024-04-14 02:34:48,315 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,316 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,316 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,317 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-14 02:34:48,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-14 02:34:48,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-14 02:34:48,317 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-14 02:34:48,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications 2024-04-14 02:34:48,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,318 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,319 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,319 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML 2024-04-14 02:34:48,320 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,321 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/Bio/Phylo 2024-04-14 02:34:48,322 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-14 02:34:48,322 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-14 02:34:48,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-14 02:34:48,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-14 02:34:48,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/Bio/Data 2024-04-14 02:34:48,323 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,323 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,324 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/Bio/ExPASy 2024-04-14 02:34:48,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,325 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-14 02:34:48,325 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-14 02:34:48,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-14 02:34:48,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-14 02:34:48,326 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/Bio/Restriction 2024-04-14 02:34:48,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,327 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,328 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-04-14 02:34:48,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Alphabet 2024-04-14 02:34:48,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,328 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,328 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,329 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/Bio/SCOP 2024-04-14 02:34:48,330 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,330 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-14 02:34:48,330 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-14 02:34:48,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-14 02:34:48,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO 2024-04-14 02:34:48,331 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:48,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:48,331 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO 2024-04-14 02:34:48,332 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,332 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO 2024-04-14 02:34:48,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,333 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,333 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model 2024-04-14 02:34:48,334 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,335 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,335 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO 2024-04-14 02:34:48,336 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO 2024-04-14 02:34:48,336 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:48,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:48,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO 2024-04-14 02:34:48,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/File.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,337 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,337 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-14 02:34:48,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-14 02:34:48,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/Bio/Geo 2024-04-14 02:34:48,338 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,338 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,339 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-14 02:34:48,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-14 02:34:48,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/applications 2024-04-14 02:34:48,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,339 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,340 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,341 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-14 02:34:48,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-14 02:34:48,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar 2024-04-14 02:34:48,341 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/motifs 2024-04-14 02:34:48,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,342 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,342 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,343 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,344 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,345 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,346 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,347 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/Bio/SeqIO 2024-04-14 02:34:48,348 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-04-14 02:34:48,348 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway 2024-04-14 02:34:48,348 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-14 02:34:48,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-14 02:34:48,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-14 02:34:48,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep 2024-04-14 02:34:48,349 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-04-14 02:34:48,349 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/TogoWS 2024-04-14 02:34:48,349 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,350 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,351 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,351 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,352 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram 2024-04-14 02:34:48,353 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/Bio/Graphics 2024-04-14 02:34:48,354 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-14 02:34:48,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-14 02:34:48,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SwissProt 2024-04-14 02:34:48,354 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/py.typed -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,355 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-04-14 02:34:48,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/UniGene 2024-04-14 02:34:48,355 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,356 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline 2024-04-14 02:34:48,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Medline 2024-04-14 02:34:48,356 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,356 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,357 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,358 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,359 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,359 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,360 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/Bio/Align/Applications 2024-04-14 02:34:48,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,361 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,362 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,363 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,363 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,363 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-04-14 02:34:48,363 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,364 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,365 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,366 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,367 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,368 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data 2024-04-14 02:34:48,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices 2024-04-14 02:34:48,369 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,370 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,371 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/Bio/Align 2024-04-14 02:34:48,372 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-14 02:34:48,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-14 02:34:48,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-14 02:34:48,372 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/Bio/NMR 2024-04-14 02:34:48,373 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,373 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/Bio/SeqUtils 2024-04-14 02:34:48,374 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-14 02:34:48,374 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-14 02:34:48,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-14 02:34:48,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/Bio/codonalign 2024-04-14 02:34:48,375 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/Bio 2024-04-14 02:34:48,375 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,376 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/Bio/Nexus 2024-04-14 02:34:48,377 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,377 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,378 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,379 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/Bio/AlignIO 2024-04-14 02:34:48,380 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,380 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,380 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,380 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,381 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,381 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/Bio/Cluster 2024-04-14 02:34:48,382 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,382 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,382 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,382 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,382 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,383 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,383 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/BioSQL 2024-04-14 02:34:48,383 root INFO running install_egg_info 2024-04-14 02:34:48,388 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/biopython-1.82-py3.12.egg-info 2024-04-14 02:34:48,389 root INFO running install_scripts 2024-04-14 02:34:48,395 wheel INFO creating build/bdist.linux-x86_64/wheel/biopython-1.82.dist-info/WHEEL 2024-04-14 02:34:48,395 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-qbgfgpmk/biopython-1.82-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it 2024-04-14 02:34:48,396 wheel INFO adding 'Bio/File.py' 2024-04-14 02:34:48,396 wheel INFO adding 'Bio/LogisticRegression.py' 2024-04-14 02:34:48,396 wheel INFO adding 'Bio/MarkovModel.py' 2024-04-14 02:34:48,397 wheel INFO adding 'Bio/MaxEntropy.py' 2024-04-14 02:34:48,397 wheel INFO adding 'Bio/NaiveBayes.py' 2024-04-14 02:34:48,398 wheel INFO adding 'Bio/Seq.py' 2024-04-14 02:34:48,398 wheel INFO adding 'Bio/SeqFeature.py' 2024-04-14 02:34:48,399 wheel INFO adding 'Bio/SeqRecord.py' 2024-04-14 02:34:48,400 wheel INFO adding 'Bio/__init__.py' 2024-04-14 02:34:48,400 wheel INFO adding 'Bio/_utils.py' 2024-04-14 02:34:48,400 wheel INFO adding 'Bio/bgzf.py' 2024-04-14 02:34:48,401 wheel INFO adding 'Bio/cpairwise2.cpython-312-x86_64-linux-musl.so' 2024-04-14 02:34:48,401 wheel INFO adding 'Bio/cpairwise2module.c' 2024-04-14 02:34:48,401 wheel INFO adding 'Bio/kNN.py' 2024-04-14 02:34:48,402 wheel INFO adding 'Bio/pairwise2.py' 2024-04-14 02:34:48,402 wheel INFO adding 'Bio/py.typed' 2024-04-14 02:34:48,403 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-04-14 02:34:48,403 wheel INFO adding 'Bio/Affy/__init__.py' 2024-04-14 02:34:48,403 wheel INFO adding 'Bio/Align/AlignInfo.py' 2024-04-14 02:34:48,404 wheel INFO adding 'Bio/Align/__init__.py' 2024-04-14 02:34:48,405 wheel INFO adding 'Bio/Align/_codonaligner.c' 2024-04-14 02:34:48,406 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so' 2024-04-14 02:34:48,407 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2024-04-14 02:34:48,409 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so' 2024-04-14 02:34:48,411 wheel INFO adding 'Bio/Align/a2m.py' 2024-04-14 02:34:48,411 wheel INFO adding 'Bio/Align/analysis.py' 2024-04-14 02:34:48,411 wheel INFO adding 'Bio/Align/bed.py' 2024-04-14 02:34:48,412 wheel INFO adding 'Bio/Align/bigbed.py' 2024-04-14 02:34:48,412 wheel INFO adding 'Bio/Align/bigmaf.py' 2024-04-14 02:34:48,413 wheel INFO adding 'Bio/Align/bigpsl.py' 2024-04-14 02:34:48,413 wheel INFO adding 'Bio/Align/chain.py' 2024-04-14 02:34:48,413 wheel INFO adding 'Bio/Align/clustal.py' 2024-04-14 02:34:48,414 wheel INFO adding 'Bio/Align/emboss.py' 2024-04-14 02:34:48,414 wheel INFO adding 'Bio/Align/exonerate.py' 2024-04-14 02:34:48,414 wheel INFO adding 'Bio/Align/fasta.py' 2024-04-14 02:34:48,415 wheel INFO adding 'Bio/Align/hhr.py' 2024-04-14 02:34:48,415 wheel INFO adding 'Bio/Align/interfaces.py' 2024-04-14 02:34:48,415 wheel INFO adding 'Bio/Align/maf.py' 2024-04-14 02:34:48,416 wheel INFO adding 'Bio/Align/mauve.py' 2024-04-14 02:34:48,416 wheel INFO adding 'Bio/Align/msf.py' 2024-04-14 02:34:48,416 wheel INFO adding 'Bio/Align/nexus.py' 2024-04-14 02:34:48,416 wheel INFO adding 'Bio/Align/phylip.py' 2024-04-14 02:34:48,417 wheel INFO adding 'Bio/Align/psl.py' 2024-04-14 02:34:48,417 wheel INFO adding 'Bio/Align/sam.py' 2024-04-14 02:34:48,418 wheel INFO adding 'Bio/Align/stockholm.py' 2024-04-14 02:34:48,418 wheel INFO adding 'Bio/Align/tabular.py' 2024-04-14 02:34:48,418 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2024-04-14 02:34:48,419 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2024-04-14 02:34:48,419 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2024-04-14 02:34:48,419 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2024-04-14 02:34:48,419 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2024-04-14 02:34:48,420 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2024-04-14 02:34:48,420 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2024-04-14 02:34:48,421 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2024-04-14 02:34:48,421 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2024-04-14 02:34:48,421 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2024-04-14 02:34:48,421 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2024-04-14 02:34:48,422 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2024-04-14 02:34:48,422 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2024-04-14 02:34:48,422 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2024-04-14 02:34:48,422 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2024-04-14 02:34:48,423 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2024-04-14 02:34:48,423 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2024-04-14 02:34:48,423 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2024-04-14 02:34:48,423 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2024-04-14 02:34:48,423 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2024-04-14 02:34:48,424 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2024-04-14 02:34:48,424 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2024-04-14 02:34:48,424 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2024-04-14 02:34:48,424 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2024-04-14 02:34:48,425 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2024-04-14 02:34:48,425 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2024-04-14 02:34:48,425 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2024-04-14 02:34:48,425 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2024-04-14 02:34:48,425 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2024-04-14 02:34:48,426 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2024-04-14 02:34:48,426 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2024-04-14 02:34:48,426 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2024-04-14 02:34:48,426 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2024-04-14 02:34:48,426 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2024-04-14 02:34:48,427 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2024-04-14 02:34:48,427 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2024-04-14 02:34:48,427 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2024-04-14 02:34:48,427 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2024-04-14 02:34:48,428 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2024-04-14 02:34:48,428 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2024-04-14 02:34:48,428 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2024-04-14 02:34:48,428 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2024-04-14 02:34:48,429 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2024-04-14 02:34:48,429 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython/usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 7.3 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r1.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-x86_64.so.1 >>> py3-biopython*: Package size: 12.5 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r1.apk >>> py3-biopython: Build complete at Sun, 14 Apr 2024 02:34:54 +0000 elapsed time 0h 0m 28s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/32) Purging .makedepends-py3-biopython (20240414.023428) (2/32) Purging py3-gpep517-pyc (15-r2) (3/32) Purging py3-gpep517 (15-r2) (4/32) Purging py3-installer-pyc (0.7.0-r2) (5/32) Purging py3-installer (0.7.0-r2) (6/32) Purging py3-setuptools-pyc (69.2.0-r2) (7/32) Purging py3-setuptools (69.2.0-r2) (8/32) Purging py3-wheel-pyc (0.42.0-r1) (9/32) Purging py3-wheel (0.42.0-r1) (10/32) Purging py3-packaging-pyc (24.0-r1) (11/32) Purging py3-packaging (24.0-r1) (12/32) Purging py3-parsing-pyc (3.1.2-r1) (13/32) Purging py3-parsing (3.1.2-r1) (14/32) Purging py3-numpy-dev (1.25.2-r1) (15/32) Purging py3-numpy-pyc (1.25.2-r1) (16/32) Purging py3-numpy (1.25.2-r1) (17/32) Purging openblas (0.3.27-r0) (18/32) Purging python3-dev (3.12.3-r0) (19/32) Purging libgfortran (13.2.1_git20240309-r0) (20/32) Purging libquadmath (13.2.1_git20240309-r0) (21/32) Purging python3-pyc (3.12.3-r0) (22/32) Purging python3-pycache-pyc0 (3.12.3-r0) (23/32) Purging pyc (3.12.3-r0) (24/32) Purging python3 (3.12.3-r0) (25/32) Purging gdbm (1.23-r1) (26/32) Purging libbz2 (1.0.8-r6) (27/32) Purging libffi (3.4.6-r0) (28/32) Purging libpanelw (6.4_p20240330-r0) (29/32) Purging mpdecimal (4.0.0-r0) (30/32) Purging readline (8.2.10-r0) (31/32) Purging sqlite-libs (3.45.2-r0) (32/32) Purging xz-libs (5.6.1-r3) Executing busybox-1.36.1-r25.trigger OK: 377 MiB in 107 packages >>> py3-biopython: Updating the community/x86_64 repository index... >>> py3-biopython: Signing the index...