>>> py3-biopython: Building community/py3-biopython 1.86-r1 (using abuild 3.16.0-r0) started Sat, 28 Mar 2026 22:32:53 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/32) Installing libbz2 (1.0.8-r6)
( 2/32) Installing libffi (3.5.2-r0)
( 3/32) Installing gdbm (1.26-r0)
( 4/32) Installing xz-libs (5.8.2-r0)
( 5/32) Installing mpdecimal (4.0.1-r0)
( 6/32) Installing libpanelw (6.6_p20251231-r0)
( 7/32) Installing sqlite-libs (3.51.2-r1)
( 8/32) Installing python3 (3.14.3-r0)
( 9/32) Installing python3-pycache-pyc0 (3.14.3-r0)
(10/32) Installing pyc (3.14.3-r0)
(11/32) Installing py3-numpy-pyc (2.4.3-r2)
(12/32) Installing python3-pyc (3.14.3-r0)
(13/32) Installing libquadmath (15.2.0-r2)
(14/32) Installing libgfortran (15.2.0-r2)
(15/32) Installing openblas (0.3.30-r2)
(16/32) Installing py3-numpy (2.4.3-r2)
(17/32) Installing py3-numpy-tests (2.4.3-r2)
(18/32) Installing py3-installer (0.7.0-r3)
(19/32) Installing py3-installer-pyc (0.7.0-r3)
(20/32) Installing py3-gpep517 (19-r2)
(21/32) Installing py3-gpep517-pyc (19-r2)
(22/32) Installing py3-parsing (3.3.2-r1)
(23/32) Installing py3-parsing-pyc (3.3.2-r1)
(24/32) Installing py3-packaging (26.0-r1)
(25/32) Installing py3-packaging-pyc (26.0-r1)
(26/32) Installing py3-setuptools (82.0.1-r1)
(27/32) Installing py3-setuptools-pyc (82.0.1-r1)
(28/32) Installing py3-wheel (0.46.3-r1)
(29/32) Installing py3-wheel-pyc (0.46.3-r1)
(30/32) Installing py3-numpy-dev (2.4.3-r2)
(31/32) Installing python3-dev (3.14.3-r0)
(32/32) Installing .makedepends-py3-biopython (20260328.223256)
Executing busybox-1.37.0-r31.trigger
OK: 657.0 MiB in 138 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
saving to '/var/cache/distfiles/edge/biopython-1.86.tar.gz.part'
biopython-1.86.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.86.tar.gz.part' saved
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.86.tar.gz
/var/cache/distfiles/edge/biopython-1.86.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.86.tar.gz...
2026-03-28 22:32:58,831 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2026-03-28 22:32:58,851 root INFO running bdist_wheel
2026-03-28 22:32:58,864 root INFO running build
2026-03-28 22:32:58,864 root INFO running build_py
2026-03-28 22:32:58,867 root INFO creating build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,867 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,868 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,868 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,868 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,869 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,869 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,870 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,870 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:58,870 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-03-28 22:32:58,871 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-03-28 22:32:58,871 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-03-28 22:32:58,871 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,871 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,872 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,872 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,872 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,873 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,873 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,873 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,873 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,874 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,874 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,874 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,874 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,874 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,875 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,875 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,875 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,875 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,876 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,876 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,876 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,876 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,877 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,877 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,877 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:58,878 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-03-28 22:32:58,878 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-03-28 22:32:58,878 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,878 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,879 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,879 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,879 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,879 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,880 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,880 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,880 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,880 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,881 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,881 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-03-28 22:32:58,881 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-03-28 22:32:58,881 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-03-28 22:32:58,882 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,882 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,882 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,882 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,883 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,883 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-03-28 22:32:58,883 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-03-28 22:32:58,883 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-03-28 22:32:58,884 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:32:58,884 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:32:58,884 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-03-28 22:32:58,884 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-03-28 22:32:58,884 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-03-28 22:32:58,885 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-03-28 22:32:58,885 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-03-28 22:32:58,885 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-03-28 22:32:58,885 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Data
2026-03-28 22:32:58,886 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-03-28 22:32:58,886 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-03-28 22:32:58,886 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-03-28 22:32:58,886 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-03-28 22:32:58,887 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-03-28 22:32:58,887 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-03-28 22:32:58,887 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-03-28 22:32:58,887 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-03-28 22:32:58,888 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-03-28 22:32:58,888 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-03-28 22:32:58,888 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-03-28 22:32:58,889 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,889 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,890 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,890 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,890 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,890 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,891 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-03-28 22:32:58,891 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-03-28 22:32:58,891 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-03-28 22:32:58,891 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-03-28 22:32:58,892 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-03-28 22:32:58,892 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-03-28 22:32:58,892 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-03-28 22:32:58,892 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-03-28 22:32:58,893 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-03-28 22:32:58,893 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,893 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,893 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,893 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,894 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,894 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,894 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,894 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-03-28 22:32:58,895 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,895 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,895 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,895 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,896 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,896 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,896 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,896 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,897 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,897 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,897 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,898 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,898 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-03-28 22:32:58,898 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-03-28 22:32:58,898 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-03-28 22:32:58,899 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-03-28 22:32:58,899 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-03-28 22:32:58,899 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-03-28 22:32:58,899 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-03-28 22:32:58,899 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-03-28 22:32:58,900 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-03-28 22:32:58,900 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-03-28 22:32:58,900 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-03-28 22:32:58,900 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-03-28 22:32:58,901 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-03-28 22:32:58,901 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-03-28 22:32:58,901 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-03-28 22:32:58,901 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-03-28 22:32:58,901 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-03-28 22:32:58,902 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-03-28 22:32:58,902 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-03-28 22:32:58,902 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-03-28 22:32:58,902 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-03-28 22:32:58,903 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-03-28 22:32:58,903 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-03-28 22:32:58,903 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-03-28 22:32:58,903 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,903 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,904 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,904 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,904 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,904 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,905 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,905 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,905 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,905 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,906 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,906 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:58,906 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-03-28 22:32:58,906 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-03-28 22:32:58,907 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-03-28 22:32:58,907 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,907 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,907 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,908 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,908 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,908 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:58,908 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-03-28 22:32:58,909 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-03-28 22:32:58,909 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-03-28 22:32:58,909 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-03-28 22:32:58,909 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-03-28 22:32:58,909 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-03-28 22:32:58,910 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-03-28 22:32:58,910 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-03-28 22:32:58,910 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-03-28 22:32:58,910 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-03-28 22:32:58,911 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,911 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,911 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,912 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,912 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,912 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,912 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,913 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,913 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,913 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,913 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,914 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,914 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,914 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,914 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,915 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,915 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,915 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,915 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,916 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,916 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,916 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,916 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,917 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,917 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,917 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,918 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,918 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,918 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,918 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,919 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,919 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,919 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,919 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,919 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,920 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,920 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,920 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,920 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,921 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,921 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:58,921 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-03-28 22:32:58,921 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-03-28 22:32:58,922 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-03-28 22:32:58,922 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-03-28 22:32:58,922 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-03-28 22:32:58,922 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-03-28 22:32:58,923 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-03-28 22:32:58,923 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-03-28 22:32:58,923 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-03-28 22:32:58,923 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-03-28 22:32:58,924 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-03-28 22:32:58,924 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-03-28 22:32:58,924 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-03-28 22:32:58,925 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-03-28 22:32:58,925 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-03-28 22:32:58,926 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,926 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,926 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,927 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,927 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,927 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,927 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,928 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-03-28 22:32:58,928 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,928 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,928 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,929 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,929 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,929 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-03-28 22:32:58,930 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,930 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,930 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,930 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,930 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,931 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-03-28 22:32:58,931 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-03-28 22:32:58,931 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-03-28 22:32:58,931 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-03-28 22:32:58,932 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-03-28 22:32:58,932 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-03-28 22:32:58,932 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-03-28 22:32:58,932 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-03-28 22:32:58,933 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,933 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,933 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,933 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,934 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,934 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,934 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-03-28 22:32:58,934 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-03-28 22:32:58,934 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-03-28 22:32:58,935 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-03-28 22:32:58,935 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-03-28 22:32:58,935 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-03-28 22:32:58,936 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,936 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,936 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,936 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,936 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,937 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-03-28 22:32:58,937 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-03-28 22:32:58,937 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-03-28 22:32:58,937 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-03-28 22:32:58,938 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,938 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,938 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,938 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,939 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,939 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,939 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,940 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,940 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,940 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,940 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,941 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,941 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,941 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,941 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,942 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,942 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,942 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,942 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,943 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,943 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,943 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,943 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,944 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:58,944 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,944 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,944 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,945 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,945 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,945 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,945 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,946 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-03-28 22:32:58,946 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-03-28 22:32:58,946 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-03-28 22:32:58,946 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-03-28 22:32:58,947 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-03-28 22:32:58,947 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-03-28 22:32:58,947 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-03-28 22:32:58,947 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-03-28 22:32:58,947 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-03-28 22:32:58,948 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-03-28 22:32:58,948 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-03-28 22:32:58,948 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-03-28 22:32:58,949 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,949 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,949 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,949 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,949 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,950 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,950 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,950 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,951 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,951 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,951 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,951 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,952 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,952 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,952 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,952 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,953 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-03-28 22:32:58,953 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,953 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,953 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,954 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,954 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,954 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,954 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,954 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,955 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,955 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-03-28 22:32:58,955 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-03-28 22:32:58,955 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-03-28 22:32:58,956 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-03-28 22:32:58,956 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-03-28 22:32:58,956 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-03-28 22:32:58,956 root INFO creating build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,957 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,957 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,957 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,957 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,958 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:58,958 root INFO running egg_info
2026-03-28 22:32:58,960 root INFO writing biopython.egg-info/PKG-INFO
2026-03-28 22:32:58,961 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-03-28 22:32:58,961 root INFO writing requirements to biopython.egg-info/requires.txt
2026-03-28 22:32:58,961 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-03-28 22:32:58,975 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-03-28 22:32:59,002 root INFO reading manifest template 'MANIFEST.in'
2026-03-28 22:32:59,054 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-03-28 22:32:59,057 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-03-28 22:32:59,060 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-03-28 22:32:59,062 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-03-28 22:32:59,064 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-03-28 22:32:59,066 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-03-28 22:32:59,071 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-03-28 22:32:59,071 root INFO adding license file 'LICENSE'
2026-03-28 22:32:59,071 root INFO adding license file 'LICENSE.rst'
2026-03-28 22:32:59,096 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2026-03-28 22:32:59,112 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:59,112 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-314/Bio
2026-03-28 22:32:59,113 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,113 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,113 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,114 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,114 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,114 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-03-28 22:32:59,115 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-03-28 22:32:59,115 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,115 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,115 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,116 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,116 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,116 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,116 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,117 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,117 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,117 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,117 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,118 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,118 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,118 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,118 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,118 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,119 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,119 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,119 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,119 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,120 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,120 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,120 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,120 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,121 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,121 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,121 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,121 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,121 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,122 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,122 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-03-28 22:32:59,122 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:32:59,123 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:32:59,123 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:32:59,123 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,123 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,124 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,124 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,124 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,124 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,125 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,125 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,125 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,125 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,126 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,126 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,126 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,126 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,127 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,127 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,127 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,127 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,128 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,128 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,128 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,128 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,129 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,129 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,129 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,129 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,130 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,130 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,130 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,131 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,131 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,169 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,170 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,170 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,170 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,171 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,172 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,172 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,172 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,173 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,173 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,173 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,173 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,174 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,174 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,174 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,174 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,174 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,175 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,175 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,175 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,175 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,176 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,177 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,177 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,177 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,177 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,178 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,178 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,178 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,178 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,179 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,179 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,179 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,179 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,180 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,180 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,180 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,180 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,180 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,181 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,181 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,181 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,182 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,182 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,182 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,182 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,183 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,183 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-03-28 22:32:59,183 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,184 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,184 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,184 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,185 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,185 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,185 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,185 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,186 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,186 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,186 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,186 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,187 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,187 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,187 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,187 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,188 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,188 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,188 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,188 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,188 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,189 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,189 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,189 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,189 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,190 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,190 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,190 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,190 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,191 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,191 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,191 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,191 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,192 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,192 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,192 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,192 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,193 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,193 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,193 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,193 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,194 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,194 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,194 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,194 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,195 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,195 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,195 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,195 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,196 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,196 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,196 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-03-28 22:32:59,196 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-03-28 22:32:59,196 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-03-28 22:32:59,197 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-03-28 22:32:59,197 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-03-28 22:32:59,197 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:32:59,197 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:32:59,198 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:59,198 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:59,198 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:32:59,198 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:32:59,199 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-03-28 22:32:59,203 root INFO running build_ext
2026-03-28 22:32:59,205 root INFO building 'Bio.Align._aligncore' extension
2026-03-28 22:32:59,205 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Align
2026-03-28 22:32:59,205 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o
2026-03-28 22:32:59,462 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so
2026-03-28 22:32:59,480 root INFO building 'Bio.Align._alignmentcounts' extension
2026-03-28 22:32:59,480 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o
2026-03-28 22:33:00,192 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:00,209 root INFO building 'Bio.Align._codonaligner' extension
2026-03-28 22:33:00,209 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o
2026-03-28 22:33:00,780 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:00,796 root INFO building 'Bio.Align._pairwisealigner' extension
2026-03-28 22:33:00,797 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o
2026-03-28 22:33:07,469 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:07,484 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-03-28 22:33:07,485 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-03-28 22:33:07,485 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o
2026-03-28 22:33:07,669 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:07,685 root INFO building 'Bio.cpairwise2' extension
2026-03-28 22:33:07,686 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o
2026-03-28 22:33:07,999 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:08,015 root INFO building 'Bio.Nexus.cnexus' extension
2026-03-28 22:33:08,015 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Nexus
2026-03-28 22:33:08,016 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o
2026-03-28 22:33:08,156 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:08,173 root INFO building 'Bio.motifs._pwm' extension
2026-03-28 22:33:08,173 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/motifs
2026-03-28 22:33:08,174 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o
2026-03-28 22:33:08,339 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:08,355 root INFO building 'Bio.Cluster._cluster' extension
2026-03-28 22:33:08,356 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Cluster
2026-03-28 22:33:08,356 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-03-28 22:33:10,672 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-03-28 22:33:11,372 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:11,391 root INFO building 'Bio.PDB.ccealign' extension
2026-03-28 22:33:11,392 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/PDB
2026-03-28 22:33:11,392 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o
2026-03-28 22:33:11,736 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:11,754 root INFO building 'Bio.PDB.kdtrees' extension
2026-03-28 22:33:11,754 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o
2026-03-28 22:33:12,171 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:12,187 root INFO building 'Bio.PDB._bcif_helper' extension
2026-03-28 22:33:12,188 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o
2026-03-28 22:33:12,351 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:12,367 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-03-28 22:33:12,368 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/SeqIO
2026-03-28 22:33:12,368 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o
2026-03-28 22:33:12,571 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so
2026-03-28 22:33:12,600 root INFO installing to build/bdist.linux-x86_64/wheel
2026-03-28 22:33:12,600 root INFO running install
2026-03-28 22:33:12,621 root INFO running install_lib
2026-03-28 22:33:12,627 root INFO creating build/bdist.linux-x86_64/wheel
2026-03-28 22:33:12,628 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL
2026-03-28 22:33:12,628 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,629 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,629 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,630 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,630 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,631 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-03-28 22:33:12,632 root INFO creating build/bdist.linux-x86_64/wheel/Bio
2026-03-28 22:33:12,632 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype
2026-03-28 22:33:12,632 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-03-28 22:33:12,633 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-03-28 22:33:12,633 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-03-28 22:33:12,634 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs
2026-03-28 22:33:12,634 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,635 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,635 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,637 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,637 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,638 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,638 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,639 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,639 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,640 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-03-28 22:33:12,640 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar
2026-03-28 22:33:12,641 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-03-28 22:33:12,641 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-03-28 22:33:12,642 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,642 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline
2026-03-28 22:33:12,643 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline
2026-03-28 22:33:12,643 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM
2026-03-28 22:33:12,643 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2026-03-28 22:33:12,644 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,644 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS
2026-03-28 22:33:12,644 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS
2026-03-28 22:33:12,645 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster
2026-03-28 22:33:12,645 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-03-28 22:33:12,646 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-03-28 22:33:12,646 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-03-28 22:33:12,647 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-03-28 22:33:12,647 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-03-28 22:33:12,648 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt
2026-03-28 22:33:12,648 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-03-28 22:33:12,649 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-03-28 22:33:12,649 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer
2026-03-28 22:33:12,649 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer
2026-03-28 22:33:12,650 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus
2026-03-28 22:33:12,650 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,652 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,652 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,652 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-03-28 22:33:12,653 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy
2026-03-28 22:33:12,653 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,653 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,654 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,654 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,654 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,655 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-03-28 22:33:12,655 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction
2026-03-28 22:33:12,655 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-03-28 22:33:12,657 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-03-28 22:33:12,657 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-03-28 22:33:12,658 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-03-28 22:33:12,658 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO
2026-03-28 22:33:12,658 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,659 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,659 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,659 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,660 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,660 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,660 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,661 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,661 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,661 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,662 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,662 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,662 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,663 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,663 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,663 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,664 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,664 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,664 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,665 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,665 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,665 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-03-28 22:33:12,667 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway
2026-03-28 22:33:12,667 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep
2026-03-28 22:33:12,667 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-03-28 22:33:12,668 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-03-28 22:33:12,668 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-03-28 22:33:12,668 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway
2026-03-28 22:33:12,669 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez
2026-03-28 22:33:12,669 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs
2026-03-28 22:33:12,669 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,673 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,673 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,673 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,675 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,675 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,675 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,677 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,677 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,677 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,691 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,691 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,691 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,691 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,695 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,695 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,695 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,695 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,701 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,701 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,701 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,701 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,708 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,708 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,708 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,712 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,712 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,712 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,734 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,734 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,734 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,734 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-03-28 22:33:12,739 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs
2026-03-28 22:33:12,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-03-28 22:33:12,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-03-28 22:33:12,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-03-28 22:33:12,740 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-03-28 22:33:12,740 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-03-28 22:33:12,740 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene
2026-03-28 22:33:12,740 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene
2026-03-28 22:33:12,741 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,741 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,741 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align
2026-03-28 22:33:12,741 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,743 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,743 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,743 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,749 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices
2026-03-28 22:33:12,749 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-03-28 22:33:12,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-03-28 22:33:12,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-03-28 22:33:12,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-03-28 22:33:12,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-03-28 22:33:12,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,757 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils
2026-03-28 22:33:12,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-03-28 22:33:12,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,759 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing
2026-03-28 22:33:12,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-03-28 22:33:12,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-03-28 22:33:12,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-03-28 22:33:12,760 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass
2026-03-28 22:33:12,760 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass
2026-03-28 22:33:12,760 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet
2026-03-28 22:33:12,760 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet
2026-03-28 22:33:12,760 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics
2026-03-28 22:33:12,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-03-28 22:33:12,762 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-03-28 22:33:12,765 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo
2026-03-28 22:33:12,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-03-28 22:33:12,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-03-28 22:33:12,766 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast
2026-03-28 22:33:12,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-03-28 22:33:12,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-03-28 22:33:12,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-03-28 22:33:12,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-03-28 22:33:12,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-03-28 22:33:12,768 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB
2026-03-28 22:33:12,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,769 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,769 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf
2026-03-28 22:33:12,769 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-03-28 22:33:12,769 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-03-28 22:33:12,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-03-28 22:33:12,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,772 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,772 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,772 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,772 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-03-28 22:33:12,780 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss
2026-03-28 22:33:12,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-03-28 22:33:12,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-03-28 22:33:12,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-03-28 22:33:12,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,781 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,781 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt
2026-03-28 22:33:12,781 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-03-28 22:33:12,781 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-03-28 22:33:12,782 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen
2026-03-28 22:33:12,782 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop
2026-03-28 22:33:12,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-03-28 22:33:12,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-03-28 22:33:12,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-03-28 22:33:12,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen
2026-03-28 22:33:12,783 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR
2026-03-28 22:33:12,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-03-28 22:33:12,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-03-28 22:33:12,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-03-28 22:33:12,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,784 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign
2026-03-28 22:33:12,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-03-28 22:33:12,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-03-28 22:33:12,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-03-28 22:33:12,785 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy
2026-03-28 22:33:12,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-03-28 22:33:12,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-03-28 22:33:12,785 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank
2026-03-28 22:33:12,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-03-28 22:33:12,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-03-28 22:33:12,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-03-28 22:33:12,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-03-28 22:33:12,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,787 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo
2026-03-28 22:33:12,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,790 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML
2026-03-28 22:33:12,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-03-28 22:33:12,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-03-28 22:33:12,792 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP
2026-03-28 22:33:12,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-03-28 22:33:12,794 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data
2026-03-28 22:33:12,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-03-28 22:33:12,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-03-28 22:33:12,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-03-28 22:33:12,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-03-28 22:33:12,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-03-28 22:33:12,795 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO
2026-03-28 22:33:12,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-03-28 22:33:12,796 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model
2026-03-28 22:33:12,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-03-28 22:33:12,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-03-28 22:33:12,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-03-28 22:33:12,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-03-28 22:33:12,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-03-28 22:33:12,797 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-03-28 22:33:12,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-03-28 22:33:12,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-03-28 22:33:12,799 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-03-28 22:33:12,800 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO
2026-03-28 22:33:12,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-03-28 22:33:12,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-03-28 22:33:12,801 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO
2026-03-28 22:33:12,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-03-28 22:33:12,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-03-28 22:33:12,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-03-28 22:33:12,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-03-28 22:33:12,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-03-28 22:33:12,802 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO
2026-03-28 22:33:12,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2026-03-28 22:33:12,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2026-03-28 22:33:12,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2026-03-28 22:33:12,803 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO
2026-03-28 22:33:12,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2026-03-28 22:33:12,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2026-03-28 22:33:12,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-03-28 22:33:12,804 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG
2026-03-28 22:33:12,804 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene
2026-03-28 22:33:12,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene
2026-03-28 22:33:12,804 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML
2026-03-28 22:33:12,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2026-03-28 22:33:12,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2026-03-28 22:33:12,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2026-03-28 22:33:12,805 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme
2026-03-28 22:33:12,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme
2026-03-28 22:33:12,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2026-03-28 22:33:12,806 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound
2026-03-28 22:33:12,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound
2026-03-28 22:33:12,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2026-03-28 22:33:12,806 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map
2026-03-28 22:33:12,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map
2026-03-28 22:33:12,807 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO
2026-03-28 22:33:12,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-03-28 22:33:12,809 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS
2026-03-28 22:33:12,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS
2026-03-28 22:33:12,810 root INFO running install_egg_info
2026-03-28 22:33:12,813 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.86-py3.14.egg-info
2026-03-28 22:33:12,814 root INFO running install_scripts
2026-03-28 22:33:12,819 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.86.dist-info/WHEEL
2026-03-28 22:33:12,819 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.86/.dist/.tmp-il9gcttl/biopython-1.86-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
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2026-03-28 22:33:12,979 wheel INFO adding 'Bio/motifs/matrix.py'
2026-03-28 22:33:12,979 wheel INFO adding 'Bio/motifs/meme.py'
2026-03-28 22:33:12,979 wheel INFO adding 'Bio/motifs/minimal.py'
2026-03-28 22:33:12,979 wheel INFO adding 'Bio/motifs/pfm.py'
2026-03-28 22:33:12,980 wheel INFO adding 'Bio/motifs/thresholds.py'
2026-03-28 22:33:12,980 wheel INFO adding 'Bio/motifs/transfac.py'
2026-03-28 22:33:12,980 wheel INFO adding 'Bio/motifs/xms.py'
2026-03-28 22:33:12,980 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2026-03-28 22:33:12,981 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2026-03-28 22:33:12,981 wheel INFO adding 'Bio/phenotype/__init__.py'
2026-03-28 22:33:12,981 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2026-03-28 22:33:12,981 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2026-03-28 22:33:12,982 wheel INFO adding 'BioSQL/BioSeq.py'
2026-03-28 22:33:12,982 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2026-03-28 22:33:12,982 wheel INFO adding 'BioSQL/DBUtils.py'
2026-03-28 22:33:12,982 wheel INFO adding 'BioSQL/Loader.py'
2026-03-28 22:33:12,983 wheel INFO adding 'BioSQL/__init__.py'
2026-03-28 22:33:12,983 wheel INFO adding 'BioSQL/py.typed'
2026-03-28 22:33:12,983 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE'
2026-03-28 22:33:12,983 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst'
2026-03-28 22:33:12,984 wheel INFO adding 'biopython-1.86.dist-info/METADATA'
2026-03-28 22:33:12,984 wheel INFO adding 'biopython-1.86.dist-info/WHEEL'
2026-03-28 22:33:12,984 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt'
2026-03-28 22:33:12,986 wheel INFO adding 'biopython-1.86.dist-info/RECORD'
2026-03-28 22:33:12,987 root INFO removing build/bdist.linux-x86_64/wheel
2026-03-28 22:33:12,998 gpep517 INFO The backend produced .dist/biopython-1.86-cp314-cp314-linux_x86_64.whl
biopython-1.86-cp314-cp314-linux_x86_64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.14/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/BioSQL/__pycache__'
'usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.14/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.14/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/__pycache__'
'usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.14
>>> py3-biopython-pyc*: Package size: 6.2 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r1.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.14
	so:libc.musl-x86_64.so.1
>>> py3-biopython*: Package size: 10.8 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.86-r1.apk
>>> py3-biopython: Build complete at Sat, 28 Mar 2026 22:33:16 +0000 elapsed time 0h 0m 23s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r31.trigger
OK: 441.4 MiB in 106 packages
>>> py3-biopython: Updating the community/x86_64 repository index...
>>> py3-biopython: Signing the index...