>>> py3-biopython: Building community/py3-biopython 1.87-r0 (using abuild 3.17.0_rc2-r0) started Mon, 11 May 2026 01:31:26 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/33) Installing libbz2 (1.0.8-r6)
( 2/33) Installing libffi (3.5.2-r1)
( 3/33) Installing gdbm (1.26-r0)
( 4/33) Installing xz-libs (5.8.3-r0)
( 5/33) Installing mpdecimal (4.0.1-r0)
( 6/33) Installing libpanelw (6.6_p20260502-r0)
( 7/33) Installing readline (8.3.3-r1)
( 8/33) Installing sqlite-libs (3.53.1-r0)
( 9/33) Installing python3 (3.14.3-r0)
(10/33) Installing python3-pycache-pyc0 (3.14.3-r0)
(11/33) Installing pyc (3.14.3-r0)
(12/33) Installing py3-numpy-pyc (2.4.4-r0)
(13/33) Installing python3-pyc (3.14.3-r0)
(14/33) Installing libquadmath (15.2.0-r3)
(15/33) Installing libgfortran (15.2.0-r3)
(16/33) Installing openblas (0.3.30-r2)
(17/33) Installing py3-numpy (2.4.4-r0)
(18/33) Installing py3-numpy-tests (2.4.4-r0)
(19/33) Installing py3-installer (1.0.0-r0)
(20/33) Installing py3-installer-pyc (1.0.0-r0)
(21/33) Installing py3-gpep517 (19-r2)
(22/33) Installing py3-gpep517-pyc (19-r2)
(23/33) Installing py3-parsing (3.3.2-r1)
(24/33) Installing py3-parsing-pyc (3.3.2-r1)
(25/33) Installing py3-packaging (26.2-r0)
(26/33) Installing py3-packaging-pyc (26.2-r0)
(27/33) Installing py3-setuptools (82.0.1-r1)
(28/33) Installing py3-setuptools-pyc (82.0.1-r1)
(29/33) Installing py3-wheel (0.47.0-r0)
(30/33) Installing py3-wheel-pyc (0.47.0-r0)
(31/33) Installing py3-numpy-dev (2.4.4-r0)
(32/33) Installing python3-dev (3.14.3-r0)
(33/33) Installing .makedepends-py3-biopython (20260511.013127)
Executing busybox-1.37.0-r31.trigger
OK: 656.7 MiB in 138 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.87.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
wget: server returned error: HTTP/1.1 404 Not Found
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.87.tar.gz
Connecting to files.pythonhosted.org (151.101.64.223:443)
Connecting to files.pythonhosted.org (151.101.64.223:443)
saving to '/var/cache/distfiles/edge/biopython-1.87.tar.gz.part'
biopython-1.87.tar.g  35% |***********                     | 6886k  0:00:01 ETA
biopython-1.87.tar.g  84% |***************************     | 16.0M  0:00:00 ETA
biopython-1.87.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.87.tar.gz.part' saved
/var/cache/distfiles/edge/biopython-1.87.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.87.tar.gz
/var/cache/distfiles/edge/biopython-1.87.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.87.tar.gz...
2026-05-11 01:31:31,823 gpep517 INFO Building wheel via backend setuptools.build_meta
/usr/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases.
  config = read_configuration(filepath, True, ignore_option_errors, dist)
2026-05-11 01:31:31,867 root INFO running bdist_wheel
2026-05-11 01:31:31,876 root INFO running build
2026-05-11 01:31:31,876 root INFO running build_py
2026-05-11 01:31:31,878 root INFO creating build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,878 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,879 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,879 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,879 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,880 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,880 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,881 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,881 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:31,881 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-05-11 01:31:31,882 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-05-11 01:31:31,882 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-05-11 01:31:31,882 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,882 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,883 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,883 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,883 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,884 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,884 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,884 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,884 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,885 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,885 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,885 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,885 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,886 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,886 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,886 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,887 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,887 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,887 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,887 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,888 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,888 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,888 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,889 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,889 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:31,889 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-05-11 01:31:31,889 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-05-11 01:31:31,890 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,890 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,890 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,891 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,891 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,891 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,892 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,892 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,892 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,892 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,893 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,893 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-05-11 01:31:31,893 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-05-11 01:31:31,893 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-05-11 01:31:31,894 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,894 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,894 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,894 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,895 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,895 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-05-11 01:31:31,895 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-05-11 01:31:31,895 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-05-11 01:31:31,896 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:31,896 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:31,896 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-05-11 01:31:31,896 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-05-11 01:31:31,897 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-05-11 01:31:31,897 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-05-11 01:31:31,897 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-05-11 01:31:31,897 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-05-11 01:31:31,898 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Data
2026-05-11 01:31:31,898 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-05-11 01:31:31,898 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-05-11 01:31:31,899 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-05-11 01:31:31,899 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-05-11 01:31:31,899 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-05-11 01:31:31,899 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-05-11 01:31:31,900 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-05-11 01:31:31,900 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-05-11 01:31:31,900 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-05-11 01:31:31,900 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-05-11 01:31:31,901 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-05-11 01:31:31,901 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,902 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,902 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,902 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,902 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,903 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,903 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-05-11 01:31:31,903 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-05-11 01:31:31,903 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-05-11 01:31:31,904 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-05-11 01:31:31,904 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-05-11 01:31:31,904 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-05-11 01:31:31,905 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-05-11 01:31:31,905 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-05-11 01:31:31,905 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-05-11 01:31:31,905 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,905 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,906 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,906 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,906 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,906 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,907 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,907 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-05-11 01:31:31,907 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,907 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,908 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,908 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,908 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,909 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,909 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,909 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,909 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,910 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,910 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,910 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,911 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:31,911 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-05-11 01:31:31,911 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-05-11 01:31:31,911 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-05-11 01:31:31,911 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-05-11 01:31:31,912 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-05-11 01:31:31,912 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-05-11 01:31:31,912 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-05-11 01:31:31,912 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-05-11 01:31:31,913 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-05-11 01:31:31,913 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-05-11 01:31:31,913 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-05-11 01:31:31,913 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-05-11 01:31:31,914 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-05-11 01:31:31,914 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-05-11 01:31:31,914 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-05-11 01:31:31,914 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-05-11 01:31:31,914 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-05-11 01:31:31,915 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-05-11 01:31:31,915 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-05-11 01:31:31,915 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,915 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,916 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,916 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,916 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,916 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,917 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,917 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,917 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,917 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,918 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,918 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:31,918 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-05-11 01:31:31,918 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-05-11 01:31:31,919 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-05-11 01:31:31,919 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,919 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,920 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,920 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,920 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,920 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:31,921 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-05-11 01:31:31,921 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-05-11 01:31:31,921 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-05-11 01:31:31,921 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-05-11 01:31:31,922 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-05-11 01:31:31,922 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-05-11 01:31:31,922 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-05-11 01:31:31,922 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-05-11 01:31:31,923 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-05-11 01:31:31,923 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-05-11 01:31:31,923 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,923 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,924 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,924 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,924 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,925 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,925 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,925 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,925 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,926 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,926 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,926 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,926 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,927 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,927 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,927 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,927 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,928 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,928 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,928 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,929 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,929 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,929 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,929 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,930 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,930 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,930 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,931 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,931 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,931 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,931 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,932 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,932 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,932 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,932 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,933 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,933 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,933 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,933 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,934 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,934 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,934 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:31,935 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-05-11 01:31:31,935 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-05-11 01:31:31,935 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-05-11 01:31:31,935 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-05-11 01:31:31,936 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-05-11 01:31:31,936 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-05-11 01:31:31,936 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-05-11 01:31:31,936 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-05-11 01:31:31,937 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-05-11 01:31:31,937 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-05-11 01:31:31,937 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-05-11 01:31:31,937 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-05-11 01:31:31,938 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-05-11 01:31:31,938 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-05-11 01:31:31,938 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-05-11 01:31:31,938 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-05-11 01:31:31,939 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-05-11 01:31:31,940 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-05-11 01:31:31,940 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-05-11 01:31:31,940 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,941 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,941 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,941 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,941 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,942 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,942 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,942 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-05-11 01:31:31,942 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,943 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,943 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,943 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,943 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,944 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-05-11 01:31:31,944 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,944 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,944 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,945 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,945 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,945 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-05-11 01:31:31,946 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-05-11 01:31:31,946 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-05-11 01:31:31,946 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-05-11 01:31:31,946 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-05-11 01:31:31,947 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:31,947 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:31,947 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:31,947 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,947 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,948 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,948 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,948 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,949 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,949 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-11 01:31:31,949 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-11 01:31:31,949 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-11 01:31:31,950 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-11 01:31:31,950 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-11 01:31:31,950 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-11 01:31:31,950 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,951 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,951 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,951 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,951 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,952 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:31,952 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-11 01:31:31,952 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-11 01:31:31,952 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-11 01:31:31,953 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,953 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,953 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,954 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,954 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,954 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,955 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,955 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,955 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,956 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,956 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,956 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,957 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,957 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,957 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,957 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,958 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,958 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,958 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,959 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,959 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,959 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,959 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,960 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:31,960 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,960 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,961 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,961 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,961 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,961 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,962 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,962 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-05-11 01:31:31,962 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-05-11 01:31:31,962 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-05-11 01:31:31,963 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-05-11 01:31:31,963 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-05-11 01:31:31,963 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-05-11 01:31:31,963 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-05-11 01:31:31,964 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-05-11 01:31:31,964 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-05-11 01:31:31,964 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-05-11 01:31:31,965 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-05-11 01:31:31,965 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-05-11 01:31:31,965 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,965 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,965 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,966 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,966 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,967 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,967 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,967 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,967 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,968 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,968 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,968 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,969 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,969 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,969 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,969 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,970 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-05-11 01:31:31,970 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,970 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,970 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,971 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,971 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,971 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,971 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,972 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,972 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,972 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-05-11 01:31:31,973 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-05-11 01:31:31,973 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-05-11 01:31:31,973 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-05-11 01:31:31,973 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-05-11 01:31:31,973 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-05-11 01:31:31,974 root INFO creating build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,974 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,974 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,975 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,975 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,975 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:31,975 root INFO running egg_info
2026-05-11 01:31:31,977 root INFO writing biopython.egg-info/PKG-INFO
2026-05-11 01:31:31,978 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-05-11 01:31:31,978 root INFO writing requirements to biopython.egg-info/requires.txt
2026-05-11 01:31:31,979 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-05-11 01:31:31,992 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-05-11 01:31:32,018 root INFO reading manifest template 'MANIFEST.in'
2026-05-11 01:31:32,072 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-05-11 01:31:32,075 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-05-11 01:31:32,078 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-05-11 01:31:32,080 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-05-11 01:31:32,083 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-05-11 01:31:32,085 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-05-11 01:31:32,089 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-05-11 01:31:32,090 root INFO adding license file 'LICENSE.rst'
2026-05-11 01:31:32,115 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
2026-05-11 01:31:32,131 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:32,131 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-314/Bio
2026-05-11 01:31:32,131 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,131 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,132 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,132 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,133 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,133 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-05-11 01:31:32,133 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-05-11 01:31:32,133 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,134 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,134 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,135 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,135 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,136 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,136 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,136 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,136 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,136 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,137 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,137 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,137 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,137 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,138 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,138 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,138 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,138 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,139 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,139 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,139 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,139 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,140 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,140 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,140 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,140 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,141 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-11 01:31:32,141 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:32,141 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:32,142 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:32,142 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,142 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,142 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,143 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,144 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,145 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,145 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,145 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,145 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,146 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,146 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,146 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,146 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,147 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,147 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,147 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,147 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,147 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,148 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,149 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,149 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,149 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,150 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,150 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,150 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,151 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,151 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,151 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,152 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,193 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,198 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,199 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,200 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,200 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,200 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,200 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,201 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,201 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,201 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,202 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,204 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,204 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,205 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,207 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,210 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,211 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,211 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,212 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,212 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,212 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,213 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-05-11 01:31:32,213 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,214 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,214 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,214 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,214 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,215 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,215 root INFO copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,215 root INFO copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,215 root INFO copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,216 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,216 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,216 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,216 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,217 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,217 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-05-11 01:31:32,217 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-05-11 01:31:32,217 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-05-11 01:31:32,218 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-05-11 01:31:32,218 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-05-11 01:31:32,218 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:32,218 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:32,219 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:32,219 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:32,219 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:32,219 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:32,220 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-05-11 01:31:32,224 root INFO running build_ext
2026-05-11 01:31:32,226 root INFO building 'Bio.Align._aligncore' extension
2026-05-11 01:31:32,226 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Align
2026-05-11 01:31:32,226 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o
2026-05-11 01:31:32,483 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:32,498 root INFO building 'Bio.Align._alignmentcounts' extension
2026-05-11 01:31:32,499 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o
2026-05-11 01:31:33,208 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:33,225 root INFO building 'Bio.Align._codonaligner' extension
2026-05-11 01:31:33,226 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o
2026-05-11 01:31:33,789 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:33,806 root INFO building 'Bio.Align._pairwisealigner' extension
2026-05-11 01:31:33,807 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o
2026-05-11 01:31:40,773 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:40,793 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-05-11 01:31:40,794 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-05-11 01:31:40,794 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o
2026-05-11 01:31:40,979 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:40,996 root INFO building 'Bio.cpairwise2' extension
2026-05-11 01:31:40,996 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o
2026-05-11 01:31:41,313 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:41,329 root INFO building 'Bio.Nexus.cnexus' extension
2026-05-11 01:31:41,329 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Nexus
2026-05-11 01:31:41,330 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o
2026-05-11 01:31:41,482 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:41,498 root INFO building 'Bio.motifs._pwm' extension
2026-05-11 01:31:41,498 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/motifs
2026-05-11 01:31:41,498 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o
2026-05-11 01:31:41,683 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:41,699 root INFO building 'Bio.Cluster._cluster' extension
2026-05-11 01:31:41,699 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/Cluster
2026-05-11 01:31:41,700 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-05-11 01:31:44,318 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-05-11 01:31:45,043 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:45,063 root INFO building 'Bio.PDB.ccealign' extension
2026-05-11 01:31:45,063 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/PDB
2026-05-11 01:31:45,063 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o
2026-05-11 01:31:45,572 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:45,586 root INFO building 'Bio.PDB.kdtrees' extension
2026-05-11 01:31:45,586 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o
2026-05-11 01:31:46,045 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:46,063 root INFO building 'Bio.PDB._bcif_helper' extension
2026-05-11 01:31:46,064 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o
2026-05-11 01:31:46,233 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:46,249 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-05-11 01:31:46,249 root INFO creating build/temp.linux-x86_64-cpython-314/Bio/SeqIO
2026-05-11 01:31:46,250 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o
2026-05-11 01:31:46,461 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so
2026-05-11 01:31:46,488 root INFO installing to build/bdist.linux-x86_64/wheel
2026-05-11 01:31:46,488 root INFO running install
2026-05-11 01:31:46,503 root INFO running install_lib
2026-05-11 01:31:46,507 root INFO creating build/bdist.linux-x86_64/wheel
2026-05-11 01:31:46,507 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL
2026-05-11 01:31:46,507 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,508 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,508 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,509 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,509 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,509 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-05-11 01:31:46,510 root INFO creating build/bdist.linux-x86_64/wheel/Bio
2026-05-11 01:31:46,510 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype
2026-05-11 01:31:46,510 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-05-11 01:31:46,510 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-05-11 01:31:46,511 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-05-11 01:31:46,511 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs
2026-05-11 01:31:46,512 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,512 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,512 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,513 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,513 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,513 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,514 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,514 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,514 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,515 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,515 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,515 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,516 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-05-11 01:31:46,516 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar
2026-05-11 01:31:46,517 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-05-11 01:31:46,517 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-05-11 01:31:46,517 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,518 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline
2026-05-11 01:31:46,518 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline
2026-05-11 01:31:46,518 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM
2026-05-11 01:31:46,519 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2026-05-11 01:31:46,519 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,519 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS
2026-05-11 01:31:46,520 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS
2026-05-11 01:31:46,520 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster
2026-05-11 01:31:46,520 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-05-11 01:31:46,521 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-05-11 01:31:46,521 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-05-11 01:31:46,522 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-05-11 01:31:46,522 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-05-11 01:31:46,523 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt
2026-05-11 01:31:46,523 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-05-11 01:31:46,524 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-05-11 01:31:46,524 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer
2026-05-11 01:31:46,524 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer
2026-05-11 01:31:46,525 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus
2026-05-11 01:31:46,525 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,526 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,526 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,527 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,527 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,527 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,528 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-05-11 01:31:46,528 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy
2026-05-11 01:31:46,528 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,529 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,529 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,529 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,530 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,530 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-05-11 01:31:46,530 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction
2026-05-11 01:31:46,531 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-05-11 01:31:46,532 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-05-11 01:31:46,532 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-05-11 01:31:46,533 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-05-11 01:31:46,533 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO
2026-05-11 01:31:46,534 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,534 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,534 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,535 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,535 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,536 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,536 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,536 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,537 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,537 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,537 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,538 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,538 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,539 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,539 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,539 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,540 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,540 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,541 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,541 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,541 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,542 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,542 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,543 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,543 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-05-11 01:31:46,543 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway
2026-05-11 01:31:46,544 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep
2026-05-11 01:31:46,544 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-05-11 01:31:46,544 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-05-11 01:31:46,545 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-05-11 01:31:46,545 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway
2026-05-11 01:31:46,546 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez
2026-05-11 01:31:46,546 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs
2026-05-11 01:31:46,546 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,547 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,547 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,547 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,548 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,548 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,548 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,549 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,549 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,550 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,550 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,550 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,551 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,551 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,551 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,552 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,552 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,552 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,553 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,553 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,553 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,554 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,554 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,555 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,555 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,555 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,556 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,556 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,557 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,557 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,557 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,558 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,558 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,558 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,559 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,559 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,559 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,560 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,560 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,560 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,561 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,561 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,562 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,562 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,562 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,563 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,563 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,564 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,564 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,564 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,565 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,565 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,566 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,566 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,566 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,567 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,567 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,568 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,568 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,568 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,569 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,569 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,569 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,570 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,570 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,570 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,571 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,571 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,571 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,572 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,572 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,572 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,573 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,573 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,573 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,574 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,574 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,575 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,575 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,576 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,576 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,576 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,577 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,577 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,577 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,578 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,578 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,578 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,579 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,579 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,579 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,580 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,580 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,580 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,581 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,581 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,582 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,582 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,583 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,583 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,583 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,584 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,584 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,584 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,585 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,585 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,586 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,586 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,586 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,587 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,587 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,588 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,588 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,588 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,589 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,589 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,589 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,590 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,590 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,591 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,591 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,591 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,592 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,592 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,593 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,593 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,593 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-05-11 01:31:46,594 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,595 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,595 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,596 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,596 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,596 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,597 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,597 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,597 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,598 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,598 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,599 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,599 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,599 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,600 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,600 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,600 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,601 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,601 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,601 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,602 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,602 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,602 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,603 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,604 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,604 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,605 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-05-11 01:31:46,606 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,606 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,606 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,607 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,607 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,607 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,608 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,608 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,609 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-05-11 01:31:46,610 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,610 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,611 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,611 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,612 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,612 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,613 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,613 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,613 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,614 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,614 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,614 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,615 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,615 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,616 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,616 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-05-11 01:31:46,617 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,617 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,617 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,618 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,618 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,618 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,619 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,619 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,619 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,620 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,620 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,621 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,621 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,621 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,622 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,622 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,623 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,623 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,623 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,624 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,624 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,624 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,625 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,625 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,626 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,626 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,627 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,627 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,627 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,628 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,628 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,629 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,629 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,629 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,630 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,630 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,630 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,631 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,631 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,632 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,632 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,632 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,633 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,633 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,633 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,634 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,634 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,635 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,635 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,636 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,637 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,637 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,637 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,638 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,638 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,639 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,639 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,639 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,640 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,640 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,640 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,641 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,641 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,642 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,642 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,643 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,643 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,643 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,644 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,644 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,645 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,645 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,645 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,646 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,646 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,647 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,647 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,647 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,648 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,648 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,649 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,649 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,649 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,650 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,650 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,651 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,652 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,652 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,653 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,653 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,653 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,654 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,654 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,655 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,655 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,656 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,656 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,656 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,657 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,657 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,657 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,658 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,658 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-05-11 01:31:46,659 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs
2026-05-11 01:31:46,659 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-05-11 01:31:46,659 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-05-11 01:31:46,660 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-05-11 01:31:46,660 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-05-11 01:31:46,661 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-05-11 01:31:46,661 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene
2026-05-11 01:31:46,661 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene
2026-05-11 01:31:46,662 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,662 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,663 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align
2026-05-11 01:31:46,663 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,663 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,664 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,664 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,665 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,666 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,667 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,667 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,668 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,668 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,669 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,669 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,669 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,670 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,671 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,672 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,673 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,674 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,675 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,675 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,676 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,677 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,677 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices
2026-05-11 01:31:46,678 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,678 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,679 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,680 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,681 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,682 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,683 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,684 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,685 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,686 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,687 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-05-11 01:31:46,688 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-05-11 01:31:46,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-05-11 01:31:46,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-05-11 01:31:46,689 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-05-11 01:31:46,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,690 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-05-11 01:31:46,691 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,691 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils
2026-05-11 01:31:46,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,692 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,693 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-05-11 01:31:46,694 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,695 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing
2026-05-11 01:31:46,695 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-05-11 01:31:46,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-05-11 01:31:46,696 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-05-11 01:31:46,696 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass
2026-05-11 01:31:46,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass
2026-05-11 01:31:46,697 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet
2026-05-11 01:31:46,697 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet
2026-05-11 01:31:46,698 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics
2026-05-11 01:31:46,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,698 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,699 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,700 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-05-11 01:31:46,701 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,701 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,702 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,703 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,704 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,705 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,706 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-11 01:31:46,706 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo
2026-05-11 01:31:46,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-05-11 01:31:46,707 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-05-11 01:31:46,707 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast
2026-05-11 01:31:46,708 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-05-11 01:31:46,708 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-05-11 01:31:46,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-05-11 01:31:46,709 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-05-11 01:31:46,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-05-11 01:31:46,710 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB
2026-05-11 01:31:46,710 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,711 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,712 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,712 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf
2026-05-11 01:31:46,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-05-11 01:31:46,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-05-11 01:31:46,713 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-05-11 01:31:46,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,714 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,715 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,716 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,717 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,718 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,719 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,720 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,721 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,722 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,723 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,724 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,725 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,726 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,727 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,728 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,729 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,730 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-05-11 01:31:46,730 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss
2026-05-11 01:31:46,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-05-11 01:31:46,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-05-11 01:31:46,731 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-05-11 01:31:46,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,732 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,733 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt
2026-05-11 01:31:46,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-05-11 01:31:46,733 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-05-11 01:31:46,734 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen
2026-05-11 01:31:46,734 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop
2026-05-11 01:31:46,734 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-05-11 01:31:46,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-05-11 01:31:46,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-05-11 01:31:46,735 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen
2026-05-11 01:31:46,736 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR
2026-05-11 01:31:46,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-05-11 01:31:46,736 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-05-11 01:31:46,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-05-11 01:31:46,737 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,738 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign
2026-05-11 01:31:46,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-05-11 01:31:46,738 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-05-11 01:31:46,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-05-11 01:31:46,739 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy
2026-05-11 01:31:46,739 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-05-11 01:31:46,740 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-05-11 01:31:46,740 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank
2026-05-11 01:31:46,740 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-05-11 01:31:46,741 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-05-11 01:31:46,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-05-11 01:31:46,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-05-11 01:31:46,742 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,743 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo
2026-05-11 01:31:46,743 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,743 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,744 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,749 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML
2026-05-11 01:31:46,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-05-11 01:31:46,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-05-11 01:31:46,754 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP
2026-05-11 01:31:46,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-05-11 01:31:46,757 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data
2026-05-11 01:31:46,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-05-11 01:31:46,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-05-11 01:31:46,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-05-11 01:31:46,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-05-11 01:31:46,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-05-11 01:31:46,759 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO
2026-05-11 01:31:46,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-05-11 01:31:46,760 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model
2026-05-11 01:31:46,760 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-05-11 01:31:46,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-05-11 01:31:46,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-05-11 01:31:46,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-05-11 01:31:46,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-05-11 01:31:46,762 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-05-11 01:31:46,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-05-11 01:31:46,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-05-11 01:31:46,765 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-11 01:31:46,768 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:46,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:46,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-05-11 01:31:46,769 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO
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2026-05-11 01:31:46,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-05-11 01:31:46,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-05-11 01:31:46,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-05-11 01:31:46,771 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO
2026-05-11 01:31:46,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
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2026-05-11 01:31:46,772 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO
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2026-05-11 01:31:46,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-05-11 01:31:46,774 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG
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2026-05-11 01:31:46,775 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML
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2026-05-11 01:31:46,776 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme
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2026-05-11 01:31:46,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2026-05-11 01:31:46,777 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound
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2026-05-11 01:31:46,778 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map
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2026-05-11 01:31:46,779 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO
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2026-05-11 01:31:46,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-05-11 01:31:46,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
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2026-05-11 01:31:46,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-05-11 01:31:46,784 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS
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2026-05-11 01:31:46,784 root INFO running install_egg_info
2026-05-11 01:31:46,789 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.87-py3.14.egg-info
2026-05-11 01:31:46,791 root INFO running install_scripts
2026-05-11 01:31:46,800 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.87.dist-info/WHEEL
2026-05-11 01:31:46,801 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.87/.dist/.tmp-tbl8z47j/biopython-1.87-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
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2026-05-11 01:31:47,114 wheel INFO adding 'Bio/motifs/minimal.py'
2026-05-11 01:31:47,115 wheel INFO adding 'Bio/motifs/pfm.py'
2026-05-11 01:31:47,115 wheel INFO adding 'Bio/motifs/thresholds.py'
2026-05-11 01:31:47,116 wheel INFO adding 'Bio/motifs/transfac.py'
2026-05-11 01:31:47,116 wheel INFO adding 'Bio/motifs/xms.py'
2026-05-11 01:31:47,117 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2026-05-11 01:31:47,117 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2026-05-11 01:31:47,118 wheel INFO adding 'Bio/phenotype/__init__.py'
2026-05-11 01:31:47,118 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2026-05-11 01:31:47,119 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2026-05-11 01:31:47,119 wheel INFO adding 'BioSQL/BioSeq.py'
2026-05-11 01:31:47,120 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2026-05-11 01:31:47,120 wheel INFO adding 'BioSQL/DBUtils.py'
2026-05-11 01:31:47,121 wheel INFO adding 'BioSQL/Loader.py'
2026-05-11 01:31:47,121 wheel INFO adding 'BioSQL/__init__.py'
2026-05-11 01:31:47,122 wheel INFO adding 'BioSQL/py.typed'
2026-05-11 01:31:47,122 wheel INFO adding 'biopython-1.87.dist-info/licenses/LICENSE.rst'
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2026-05-11 01:31:47,127 wheel INFO adding 'biopython-1.87.dist-info/RECORD'
2026-05-11 01:31:47,130 root INFO removing build/bdist.linux-x86_64/wheel
<string>:18: DeprecationWarning: Invoking setup.py is deprecated and will be removed in a future release of Biopython.
Please use `pip install` or `python -m build` instead of `python setup.py` commands.
For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/

DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython.
Please use `pip install` or `python -m build` instead of `python setup.py` commands.
For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/

2026-05-11 01:31:47,158 gpep517 INFO The backend produced .dist/biopython-1.87-cp314-cp314-linux_x86_64.whl
biopython-1.87-cp314-cp314-linux_x86_64.whl
>>> py3-biopython: Entering fakeroot...
libfakeroot internal error: payload not recognized!
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.14/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/BioSQL/__pycache__'
'usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.14/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.14/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/__pycache__'
'usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.14
>>> py3-biopython-pyc*: Package size: 6.2 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.87-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.14
	so:libc.musl-x86_64.so.1
>>> py3-biopython*: Package size: 10.9 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.87-r0.apk
>>> py3-biopython: Build complete at Mon, 11 May 2026 01:31:51 +0000 elapsed time 0h 0m 25s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r31.trigger
OK: 440.6 MiB in 105 packages
>>> py3-biopython: Updating the community/x86_64 repository index...
>>> py3-biopython: Signing the index...