>>> py3-biopython: Building community/py3-biopython 1.88-r0 (using abuild 3.18.0_rc7-r0) started Sat, 10 Oct 2026 03:37:21 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/32) Installing libbz2 (1.0.8-r6)
( 2/32) Installing libffi (3.8.0-r0)
( 3/32) Installing xz-libs (5.8.4-r0)
( 4/32) Installing mpdecimal (4.0.1-r0)
( 5/32) Installing libpanelw (6.6_p20260822-r0)
( 6/32) Installing readline (8.3.3-r1)
( 7/32) Installing sqlite-libs (3.53.4-r0)
( 8/32) Installing python3 (3.14.8-r0)
( 9/32) Installing python3-pycache-pyc0 (3.14.8-r0)
(10/32) Installing pyc (3.14.8-r0)
(11/32) Installing py3-numpy-pyc (2.5.3-r0)
(12/32) Installing python3-pyc (3.14.8-r0)
(13/32) Installing libquadmath (15.2.0-r9)
(14/32) Installing libgfortran (15.2.0-r9)
(15/32) Installing openblas (0.3.30-r2)
(16/32) Installing py3-numpy (2.5.3-r0)
(17/32) Installing py3-numpy-tests (2.5.3-r0)
(18/32) Installing py3-installer (1.0.1-r0)
(19/32) Installing py3-installer-pyc (1.0.1-r0)
(20/32) Installing py3-gpep517 (20-r0)
(21/32) Installing py3-gpep517-pyc (20-r0)
(22/32) Installing py3-parsing (3.3.3-r0)
(23/32) Installing py3-parsing-pyc (3.3.3-r0)
(24/32) Installing py3-packaging (26.2-r0)
(25/32) Installing py3-packaging-pyc (26.2-r0)
(26/32) Installing py3-setuptools (84.0.0-r0)
(27/32) Installing py3-setuptools-pyc (84.0.0-r0)
(28/32) Installing py3-wheel (0.48.0-r0)
(29/32) Installing py3-wheel-pyc (0.48.0-r0)
(30/32) Installing py3-numpy-dev (2.5.3-r0)
(31/32) Installing python3-dev (3.14.8-r0)
(32/32) Installing .makedepends-py3-biopython (20261010.033721)
Executing busybox-1.38.0-r7.trigger
OK: 659.3 MiB in 139 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.88.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
wget: server returned error: HTTP/1.1 404 Not Found
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.88.tar.gz
Connecting to files.pythonhosted.org (151.101.128.223:443)
Connecting to files.pythonhosted.org (151.101.128.223:443)
saving to '/var/cache/distfiles/edge/biopython-1.88.tar.gz.part'
biopython-1.88.tar.g  31% |**********                      | 6144k  0:00:02 ETA
biopython-1.88.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.88.tar.gz.part' saved
/var/cache/distfiles/edge/biopython-1.88.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.88.tar.gz
/var/cache/distfiles/edge/biopython-1.88.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.88.tar.gz...
2026-10-10 03:37:24,980 gpep517 INFO Building wheel via backend setuptools.build_meta
/usr/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases.
  config = read_configuration(filepath, True, ignore_option_errors, dist)
2026-10-10 03:37:25,022 root INFO running bdist_wheel
2026-10-10 03:37:25,031 root INFO running build
2026-10-10 03:37:25,031 root INFO running build_py
2026-10-10 03:37:25,033 root INFO creating build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,033 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,034 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,034 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,034 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,035 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,035 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,036 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,036 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,036 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-10-10 03:37:25,036 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-10-10 03:37:25,037 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy
2026-10-10 03:37:25,037 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,037 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,038 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,038 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,038 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,039 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,039 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,039 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,039 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,039 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,040 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,040 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,040 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,040 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,041 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,041 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,041 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,041 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,042 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,042 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,042 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,042 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,043 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,043 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,043 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,044 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-10-10 03:37:25,044 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-10-10 03:37:25,044 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,044 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,045 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,045 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,045 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,045 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,046 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,046 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,046 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,046 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,047 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,047 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO
2026-10-10 03:37:25,047 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-10-10 03:37:25,047 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Alphabet
2026-10-10 03:37:25,048 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,048 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,048 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,048 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,048 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,049 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast
2026-10-10 03:37:25,049 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-10-10 03:37:25,049 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/CAPS
2026-10-10 03:37:25,049 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-10-10 03:37:25,050 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-10-10 03:37:25,050 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-10-10 03:37:25,050 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-10-10 03:37:25,050 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-10-10 03:37:25,051 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign
2026-10-10 03:37:25,051 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-10-10 03:37:25,051 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Compass
2026-10-10 03:37:25,051 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Data
2026-10-10 03:37:25,051 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-10-10 03:37:25,052 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-10-10 03:37:25,052 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-10-10 03:37:25,052 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-314/Bio/Data
2026-10-10 03:37:25,053 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-10-10 03:37:25,053 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-10-10 03:37:25,053 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-10-10 03:37:25,053 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss
2026-10-10 03:37:25,053 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-10-10 03:37:25,053 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-10-10 03:37:25,054 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez
2026-10-10 03:37:25,055 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,055 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,055 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,055 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,055 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,056 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,056 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy
2026-10-10 03:37:25,056 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-10-10 03:37:25,056 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-10-10 03:37:25,057 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-10-10 03:37:25,057 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-10-10 03:37:25,057 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank
2026-10-10 03:37:25,057 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-10-10 03:37:25,058 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-10-10 03:37:25,058 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo
2026-10-10 03:37:25,058 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,058 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,059 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,059 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,059 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,059 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,060 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,060 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics
2026-10-10 03:37:25,060 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,060 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,061 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,061 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,061 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,061 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,062 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,062 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,062 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,062 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,063 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,063 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,063 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:25,063 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-10-10 03:37:25,064 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/HMM
2026-10-10 03:37:25,064 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-10-10 03:37:25,064 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-10-10 03:37:25,064 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG
2026-10-10 03:37:25,064 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-10-10 03:37:25,065 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound
2026-10-10 03:37:25,065 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-10-10 03:37:25,065 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme
2026-10-10 03:37:25,065 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-10-10 03:37:25,065 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene
2026-10-10 03:37:25,066 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-10-10 03:37:25,066 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map
2026-10-10 03:37:25,066 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-10-10 03:37:25,066 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-10-10 03:37:25,066 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-10-10 03:37:25,067 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML
2026-10-10 03:37:25,067 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-10-10 03:37:25,067 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Medline
2026-10-10 03:37:25,067 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,067 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,068 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,068 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,068 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,068 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,069 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,069 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,069 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,069 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,070 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,070 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,070 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-10-10 03:37:25,070 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-10-10 03:37:25,070 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar
2026-10-10 03:37:25,071 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,071 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,071 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,072 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,072 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,072 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,072 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-10-10 03:37:25,072 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-10-10 03:37:25,073 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-10-10 03:37:25,073 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR
2026-10-10 03:37:25,073 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-10-10 03:37:25,073 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway
2026-10-10 03:37:25,074 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-10-10 03:37:25,074 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-10-10 03:37:25,074 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-10-10 03:37:25,074 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep
2026-10-10 03:37:25,075 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,075 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,075 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,075 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,075 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,076 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,076 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,076 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,077 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,077 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,077 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,077 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,077 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,078 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,078 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,078 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,078 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,079 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,079 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,079 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,079 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,080 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,080 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,080 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,080 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,080 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,081 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,081 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,081 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,082 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,082 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,082 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,082 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,083 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,083 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,083 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,083 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,084 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,084 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,084 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,084 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,084 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,085 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-10-10 03:37:25,085 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-10-10 03:37:25,085 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-10-10 03:37:25,085 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf
2026-10-10 03:37:25,086 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-10-10 03:37:25,086 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-10-10 03:37:25,086 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-10-10 03:37:25,086 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype
2026-10-10 03:37:25,087 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-10-10 03:37:25,087 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen
2026-10-10 03:37:25,087 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-10-10 03:37:25,087 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-10-10 03:37:25,087 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-10-10 03:37:25,088 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop
2026-10-10 03:37:25,088 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-10-10 03:37:25,088 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-10-10 03:37:25,089 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-10-10 03:37:25,089 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-10-10 03:37:25,089 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction
2026-10-10 03:37:25,090 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,090 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,090 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,090 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,091 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,091 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,091 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,091 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP
2026-10-10 03:37:25,092 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,092 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,092 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,092 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,092 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,093 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO
2026-10-10 03:37:25,093 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,093 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,093 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,094 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,094 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,094 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model
2026-10-10 03:37:25,094 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-10-10 03:37:25,095 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-10-10 03:37:25,095 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-10-10 03:37:25,095 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO
2026-10-10 03:37:25,095 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:25,096 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:25,096 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:25,096 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,096 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,096 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,097 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,097 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,097 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,097 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO
2026-10-10 03:37:25,098 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-10-10 03:37:25,098 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-10-10 03:37:25,098 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-10-10 03:37:25,098 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-10-10 03:37:25,099 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO
2026-10-10 03:37:25,099 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,099 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,099 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,099 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,100 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,100 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:25,100 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-10-10 03:37:25,100 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-10-10 03:37:25,101 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO
2026-10-10 03:37:25,101 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,101 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,101 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,102 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,102 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,102 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,102 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,103 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,103 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,103 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,103 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,104 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,104 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,104 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,104 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,105 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,105 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,105 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,105 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,106 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,106 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,106 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,106 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,107 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,107 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,107 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,107 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,108 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,108 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,108 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,108 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,109 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils
2026-10-10 03:37:25,109 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-10-10 03:37:25,109 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-10-10 03:37:25,109 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-10-10 03:37:25,110 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing
2026-10-10 03:37:25,110 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-10-10 03:37:25,110 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer
2026-10-10 03:37:25,110 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-10-10 03:37:25,110 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-10-10 03:37:25,111 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt
2026-10-10 03:37:25,111 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-10-10 03:37:25,111 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/TogoWS
2026-10-10 03:37:25,111 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,112 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,112 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,112 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,112 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,113 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,113 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,113 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,113 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,114 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,114 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,114 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,115 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,115 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,115 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,115 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,115 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo
2026-10-10 03:37:25,116 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,116 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,116 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,116 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,117 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,117 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,117 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,117 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,117 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,118 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML
2026-10-10 03:37:25,118 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-10-10 03:37:25,118 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniGene
2026-10-10 03:37:25,118 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-10-10 03:37:25,119 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-10-10 03:37:25,119 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt
2026-10-10 03:37:25,119 root INFO creating build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,119 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,119 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,120 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,120 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,120 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,120 root INFO running egg_info
2026-10-10 03:37:25,122 root INFO writing biopython.egg-info/PKG-INFO
2026-10-10 03:37:25,123 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-10-10 03:37:25,123 root INFO writing requirements to biopython.egg-info/requires.txt
2026-10-10 03:37:25,123 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-10-10 03:37:25,135 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-10-10 03:37:25,160 root INFO reading manifest template 'MANIFEST.in'
2026-10-10 03:37:25,210 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-10-10 03:37:25,214 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-10-10 03:37:25,217 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-10-10 03:37:25,220 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-10-10 03:37:25,223 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-10-10 03:37:25,226 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-10-10 03:37:25,231 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-10-10 03:37:25,231 root INFO adding license file 'LICENSE.rst'
2026-10-10 03:37:25,256 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
2026-10-10 03:37:25,271 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,271 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-314/Bio
2026-10-10 03:37:25,272 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,272 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,272 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,272 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,273 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-314/Bio/Align
2026-10-10 03:37:25,273 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-10-10 03:37:25,273 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices
2026-10-10 03:37:25,274 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,274 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,274 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,274 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,275 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,275 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,275 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,275 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,275 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,276 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,276 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,276 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,276 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,277 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,277 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,277 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,277 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,277 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,278 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,278 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,278 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,278 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,279 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,279 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,279 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,279 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,279 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,280 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,280 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,280 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,280 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data
2026-10-10 03:37:25,281 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-10-10 03:37:25,281 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-10-10 03:37:25,281 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster
2026-10-10 03:37:25,282 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,282 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,282 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,282 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,282 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,283 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,283 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,283 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,283 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,284 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,284 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,284 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,284 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,285 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,285 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,285 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,285 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,286 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,286 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,286 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,286 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,287 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,287 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,287 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,288 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,288 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,288 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,289 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,289 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,289 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,290 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,290 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,290 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,291 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,291 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,291 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,291 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,292 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,292 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,292 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,330 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,330 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,330 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,330 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,331 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,331 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,332 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,335 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,336 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,336 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,337 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,337 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,338 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,340 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,341 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,341 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,342 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,343 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,343 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,343 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,343 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,344 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,344 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,345 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,345 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,346 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
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2026-10-10 03:37:25,346 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,346 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,347 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,347 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,347 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,347 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,348 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,348 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,348 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,348 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,349 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,349 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,349 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,349 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,349 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,350 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,350 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,350 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,350 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,351 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,351 root INFO copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,351 root INFO copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,351 root INFO copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,352 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,352 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,352 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,352 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,353 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,353 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs
2026-10-10 03:37:25,353 root INFO creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-10-10 03:37:25,353 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-10-10 03:37:25,353 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-10-10 03:37:25,354 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs
2026-10-10 03:37:25,354 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-314/Bio/motifs
2026-10-10 03:37:25,354 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-314/Bio/Nexus
2026-10-10 03:37:25,354 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,355 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,355 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB
2026-10-10 03:37:25,355 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO
2026-10-10 03:37:25,355 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-314/BioSQL
2026-10-10 03:37:25,360 root INFO running build_ext
2026-10-10 03:37:25,362 root INFO building 'Bio.Align._aligncore' extension
2026-10-10 03:37:25,362 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o
2026-10-10 03:37:25,612 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:25,628 root INFO building 'Bio.Align._alignmentcounts' extension
2026-10-10 03:37:25,628 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o
2026-10-10 03:37:26,316 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:26,332 root INFO building 'Bio.Align._codonaligner' extension
2026-10-10 03:37:26,333 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o
2026-10-10 03:37:26,887 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:26,904 root INFO building 'Bio.Align._pairwisealigner' extension
2026-10-10 03:37:26,904 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o
2026-10-10 03:37:33,593 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:33,611 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-10-10 03:37:33,612 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o
2026-10-10 03:37:33,797 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:33,811 root INFO building 'Bio.cpairwise2' extension
2026-10-10 03:37:33,812 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o
2026-10-10 03:37:34,121 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:34,138 root INFO building 'Bio.Nexus.cnexus' extension
2026-10-10 03:37:34,138 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o
2026-10-10 03:37:34,281 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:34,293 root INFO building 'Bio.motifs._pwm' extension
2026-10-10 03:37:34,293 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o
2026-10-10 03:37:34,448 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:34,463 root INFO building 'Bio.Cluster._cluster' extension
2026-10-10 03:37:34,464 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-10-10 03:37:36,807 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-10-10 03:37:37,508 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:37,526 root INFO building 'Bio.PDB.ccealign' extension
2026-10-10 03:37:37,526 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o
2026-10-10 03:37:37,868 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:37,883 root INFO building 'Bio.PDB.kdtrees' extension
2026-10-10 03:37:37,884 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o
2026-10-10 03:37:38,308 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:38,324 root INFO building 'Bio.PDB._bcif_helper' extension
2026-10-10 03:37:38,324 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o
2026-10-10 03:37:38,480 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:38,496 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-10-10 03:37:38,496 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o
2026-10-10 03:37:38,692 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so
2026-10-10 03:37:38,715 root INFO installing to build/bdist.linux-x86_64/wheel
2026-10-10 03:37:38,715 root INFO running install
2026-10-10 03:37:38,735 root INFO running install_lib
2026-10-10 03:37:38,740 root INFO creating build/bdist.linux-x86_64/wheel
2026-10-10 03:37:38,741 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL
2026-10-10 03:37:38,741 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,742 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,742 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,743 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,743 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,744 root INFO copying build/lib.linux-x86_64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2026-10-10 03:37:38,745 root INFO creating build/bdist.linux-x86_64/wheel/Bio
2026-10-10 03:37:38,745 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype
2026-10-10 03:37:38,745 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-10-10 03:37:38,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-10-10 03:37:38,746 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2026-10-10 03:37:38,747 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs
2026-10-10 03:37:38,747 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,748 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,749 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,750 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,751 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,752 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,753 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2026-10-10 03:37:38,754 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar
2026-10-10 03:37:38,754 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-10-10 03:37:38,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2026-10-10 03:37:38,755 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,756 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline
2026-10-10 03:37:38,756 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline
2026-10-10 03:37:38,756 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM
2026-10-10 03:37:38,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2026-10-10 03:37:38,757 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,758 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS
2026-10-10 03:37:38,758 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS
2026-10-10 03:37:38,758 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster
2026-10-10 03:37:38,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-10-10 03:37:38,759 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-10-10 03:37:38,760 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-10-10 03:37:38,760 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-10-10 03:37:38,761 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2026-10-10 03:37:38,762 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt
2026-10-10 03:37:38,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-10-10 03:37:38,762 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2026-10-10 03:37:38,763 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer
2026-10-10 03:37:38,763 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer
2026-10-10 03:37:38,764 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus
2026-10-10 03:37:38,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,764 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,765 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,766 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2026-10-10 03:37:38,767 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy
2026-10-10 03:37:38,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,767 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,768 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,769 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2026-10-10 03:37:38,769 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction
2026-10-10 03:37:38,769 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-10-10 03:37:38,770 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-10-10 03:37:38,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-10-10 03:37:38,771 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2026-10-10 03:37:38,772 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO
2026-10-10 03:37:38,772 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,773 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,774 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,775 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,776 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,777 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,778 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,779 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,780 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,781 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2026-10-10 03:37:38,781 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway
2026-10-10 03:37:38,781 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep
2026-10-10 03:37:38,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-10-10 03:37:38,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-10-10 03:37:38,782 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2026-10-10 03:37:38,783 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway
2026-10-10 03:37:38,783 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez
2026-10-10 03:37:38,783 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs
2026-10-10 03:37:38,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,784 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,785 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,786 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,787 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,788 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,789 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,790 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,791 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,792 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,793 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,794 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,795 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,796 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,797 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,798 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,799 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,800 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,801 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,802 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,803 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,804 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,805 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,806 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,807 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,808 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,809 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,810 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,810 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,810 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,810 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,811 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,811 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,811 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,811 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,812 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,812 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,812 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,812 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,813 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,813 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,813 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,813 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,814 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,814 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,814 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,814 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,814 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,815 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,815 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,815 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,815 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,816 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,816 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,816 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,816 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,817 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,817 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,817 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,817 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,818 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,818 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,818 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,818 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,819 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,819 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,819 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,819 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,819 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,820 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,820 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,820 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,820 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,821 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,821 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,821 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,821 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,821 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,822 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,822 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,822 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,822 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,823 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,823 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,823 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,824 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,824 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_240101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,824 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-10-10 03:37:38,824 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,825 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,825 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,825 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,825 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,825 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,826 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,826 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,826 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,826 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,827 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,827 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,827 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,827 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,828 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,828 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,828 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,828 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,829 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,829 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,829 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,829 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,829 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,830 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,830 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,830 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,830 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,831 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,831 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,831 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,831 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,831 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,832 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,832 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,832 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,832 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,833 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,833 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,833 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,833 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2026-10-10 03:37:38,834 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,834 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,834 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,834 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,835 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,835 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,835 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,835 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,835 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,836 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,836 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,836 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,836 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,837 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,837 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,837 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,837 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,838 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,838 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,838 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,838 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,838 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,839 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,839 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,839 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,839 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,839 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,840 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,840 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,840 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,840 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,841 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,841 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,841 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,841 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,841 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,842 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,842 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,842 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,842 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,842 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,843 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,843 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,843 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,843 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,844 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,844 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,844 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,844 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,844 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,845 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,845 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,845 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,845 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,845 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,846 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,846 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,846 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,846 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,847 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,847 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,847 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,847 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,847 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,848 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,848 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,848 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,848 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,848 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,849 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,849 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,849 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,849 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,849 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,850 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,850 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,850 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,850 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,851 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,851 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,851 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,851 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,852 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,852 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,852 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,852 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,852 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,853 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,853 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,853 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,853 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,853 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2026-10-10 03:37:38,854 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs
2026-10-10 03:37:38,854 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-10-10 03:37:38,854 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-10-10 03:37:38,854 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2026-10-10 03:37:38,855 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-10-10 03:37:38,855 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2026-10-10 03:37:38,855 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene
2026-10-10 03:37:38,855 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene
2026-10-10 03:37:38,855 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,856 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,856 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align
2026-10-10 03:37:38,856 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,856 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,857 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,857 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,857 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,858 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,858 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,858 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,858 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,859 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,859 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,859 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,859 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,859 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,860 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,860 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,860 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,860 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,860 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,861 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,861 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,861 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,861 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,862 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,862 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,862 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,863 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,863 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,863 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,863 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,864 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,864 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices
2026-10-10 03:37:38,864 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,864 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,864 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,865 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,865 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,865 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,865 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,865 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,866 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,867 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,867 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,867 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,867 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,867 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,868 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,869 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,869 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,869 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,869 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,869 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,870 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2026-10-10 03:37:38,870 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-10-10 03:37:38,870 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-10-10 03:37:38,870 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-10-10 03:37:38,870 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2026-10-10 03:37:38,871 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,871 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align
2026-10-10 03:37:38,871 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,871 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils
2026-10-10 03:37:38,872 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,872 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,872 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,872 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,872 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,873 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,873 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2026-10-10 03:37:38,873 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,873 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing
2026-10-10 03:37:38,873 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-10-10 03:37:38,874 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-10-10 03:37:38,874 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2026-10-10 03:37:38,874 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass
2026-10-10 03:37:38,874 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass
2026-10-10 03:37:38,874 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet
2026-10-10 03:37:38,875 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet
2026-10-10 03:37:38,875 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics
2026-10-10 03:37:38,875 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,875 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,875 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,876 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,876 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,876 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,876 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2026-10-10 03:37:38,877 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,877 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,877 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,877 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,877 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,877 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,878 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,878 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,878 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,878 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,879 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,879 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,879 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2026-10-10 03:37:38,879 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo
2026-10-10 03:37:38,879 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-10-10 03:37:38,880 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2026-10-10 03:37:38,880 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast
2026-10-10 03:37:38,880 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-10-10 03:37:38,880 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-10-10 03:37:38,880 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-10-10 03:37:38,881 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-10-10 03:37:38,881 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2026-10-10 03:37:38,881 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB
2026-10-10 03:37:38,881 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,881 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,882 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,882 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,882 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,882 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf
2026-10-10 03:37:38,883 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-10-10 03:37:38,883 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-10-10 03:37:38,883 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2026-10-10 03:37:38,883 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,883 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,884 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,884 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,884 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,884 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,884 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,885 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,885 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,885 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,885 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,885 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,886 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,886 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,886 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,886 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,886 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,887 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,887 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,887 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,887 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,887 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,888 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,888 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,888 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,889 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,889 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,889 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,889 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,889 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,890 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,890 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,890 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,890 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,890 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,891 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,891 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,891 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,891 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,891 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,892 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,892 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2026-10-10 03:37:38,892 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss
2026-10-10 03:37:38,892 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-10-10 03:37:38,892 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-10-10 03:37:38,893 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2026-10-10 03:37:38,893 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,893 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,893 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt
2026-10-10 03:37:38,893 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-10-10 03:37:38,894 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2026-10-10 03:37:38,894 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen
2026-10-10 03:37:38,894 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop
2026-10-10 03:37:38,894 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-10-10 03:37:38,894 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-10-10 03:37:38,895 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2026-10-10 03:37:38,895 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen
2026-10-10 03:37:38,895 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR
2026-10-10 03:37:38,895 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-10-10 03:37:38,895 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-10-10 03:37:38,895 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2026-10-10 03:37:38,896 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,896 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign
2026-10-10 03:37:38,896 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-10-10 03:37:38,896 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-10-10 03:37:38,896 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2026-10-10 03:37:38,897 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy
2026-10-10 03:37:38,897 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-10-10 03:37:38,897 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2026-10-10 03:37:38,897 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank
2026-10-10 03:37:38,897 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-10-10 03:37:38,898 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-10-10 03:37:38,898 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-10-10 03:37:38,898 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2026-10-10 03:37:38,898 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,899 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo
2026-10-10 03:37:38,899 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,899 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,899 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,899 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,900 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,900 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,900 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,900 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,901 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,901 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,901 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,901 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,902 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,902 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML
2026-10-10 03:37:38,902 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,902 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,902 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,903 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2026-10-10 03:37:38,904 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,904 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,904 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2026-10-10 03:37:38,904 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP
2026-10-10 03:37:38,904 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,905 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,905 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,905 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,905 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,905 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,906 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2026-10-10 03:37:38,906 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data
2026-10-10 03:37:38,906 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-10-10 03:37:38,906 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-10-10 03:37:38,906 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-10-10 03:37:38,907 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2026-10-10 03:37:38,907 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio
2026-10-10 03:37:38,907 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO
2026-10-10 03:37:38,907 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-10-10 03:37:38,908 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model
2026-10-10 03:37:38,908 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-10-10 03:37:38,908 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-10-10 03:37:38,908 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-10-10 03:37:38,908 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-10-10 03:37:38,909 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2026-10-10 03:37:38,909 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,909 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,909 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,909 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,910 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,910 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,910 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2026-10-10 03:37:38,910 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-10-10 03:37:38,910 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-10-10 03:37:38,911 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,911 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,911 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,911 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,911 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,912 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2026-10-10 03:37:38,912 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:38,912 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:38,913 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2026-10-10 03:37:38,913 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO
2026-10-10 03:37:38,913 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
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2026-10-10 03:37:38,913 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
2026-10-10 03:37:38,914 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO
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2026-10-10 03:37:38,914 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO
2026-10-10 03:37:38,914 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
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2026-10-10 03:37:38,915 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO
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2026-10-10 03:37:38,915 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2026-10-10 03:37:38,916 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG
2026-10-10 03:37:38,916 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene
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2026-10-10 03:37:38,916 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML
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2026-10-10 03:37:38,917 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme
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2026-10-10 03:37:38,918 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound
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2026-10-10 03:37:38,918 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map
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2026-10-10 03:37:38,918 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO
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2026-10-10 03:37:38,919 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
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2026-10-10 03:37:38,919 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,919 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,920 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
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2026-10-10 03:37:38,920 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,920 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,920 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,921 root INFO copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2026-10-10 03:37:38,921 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS
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2026-10-10 03:37:38,921 root INFO running install_egg_info
2026-10-10 03:37:38,923 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.88-py3.14.egg-info
2026-10-10 03:37:38,924 root INFO running install_scripts
2026-10-10 03:37:38,930 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.88.dist-info/WHEEL
2026-10-10 03:37:38,930 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.88/.dist/.tmp-5_u4k6e8/biopython-1.88-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
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2026-10-10 03:37:39,090 wheel INFO adding 'Bio/motifs/minimal.py'
2026-10-10 03:37:39,090 wheel INFO adding 'Bio/motifs/pfm.py'
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2026-10-10 03:37:39,091 wheel INFO adding 'Bio/motifs/transfac.py'
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2026-10-10 03:37:39,091 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
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2026-10-10 03:37:39,092 wheel INFO adding 'Bio/phenotype/__init__.py'
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2026-10-10 03:37:39,092 wheel INFO adding 'BioSQL/BioSeq.py'
2026-10-10 03:37:39,093 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2026-10-10 03:37:39,093 wheel INFO adding 'BioSQL/DBUtils.py'
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2026-10-10 03:37:39,096 wheel INFO adding 'biopython-1.88.dist-info/RECORD'
2026-10-10 03:37:39,098 root INFO removing build/bdist.linux-x86_64/wheel
<string>:18: DeprecationWarning: Invoking setup.py is deprecated and will be removed in a future release of Biopython.
Please use `pip install` or `python -m build` instead of `python setup.py` commands.
For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/

DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython.
Please use `pip install` or `python -m build` instead of `python setup.py` commands.
For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/

2026-10-10 03:37:39,108 gpep517 INFO The backend produced .dist/biopython-1.88-cp314-cp314-linux_x86_64.whl
biopython-1.88-cp314-cp314-linux_x86_64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.14/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/BioSQL/__pycache__'
'usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.14/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.14/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/__pycache__'
'usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.14
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>>> py3-biopython*: Package size: 10.8 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.88-r0.apk
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.14
>>> py3-biopython-pyc*: Package size: 6.2 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.88-r0.apk
>>> py3-biopython: Build complete at Sat, 10 Oct 2026 03:37:42 +0000 elapsed time 0h 0m 21s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.38.0-r7.trigger
OK: 442.2 MiB in 107 packages
>>> py3-biopython: Updating the community/x86_64 repository index...
>>> py3-biopython: Signing the index...